TCONS_00025906 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025906
Unique NameTCONS_00025906
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025906 ID=TCONS_00025906|Name=TCONS_00025906|organism=Clytia hemisphaerica|type=transcript|length=400bp
GTTAAAGAGCTCATTTCCTACGATTCGAATGGTATTATCGTTCACACGAC
AATTGATAATGCGCGTGCGCAACTATATCGAAACGCTTTTCAATCTTTGA
CTTACACAGCTCGAAAAGCTGTCAAAATAATGGACCCGAATGACGAATTG
AAATTTATACGCATGCGTGTGAAAGGTGTTGAAATTATCATAGCTCCTGA
TGTAGATGGAACCTTAGCGTTGCTGCAAAATGTAGCTCCTTATGATCCAC
CCTACCGCCCTCCCAAAGAAATAGTGGCACAAATTCAACCAAATAATGCA
CCACCCATTGCCGCCGCCCCTGAACAAGAACATTTAGATGTTGAAGAAAA
TATAGAAGAAACAGTTAAAACTCAAAAGGAAGAAGATTCATGAATCGTAA
Run BLAST on NCBI

protein sequence of TCONS_00025906-protein

>TCONS_00025906-protein ID=TCONS_00025906-protein|Name=TCONS_00025906-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
VKELISYDSNGIIVHTTIDNARAQLYRNAFQSLTYTARKAVKIMDPNDEL
KFIRMRVKGVEIIIAPDVDGTLALLQNVAPYDPPYRPPKEIVAQIQPNNA
PPIAAAPEQEHLDVEENIEETVKTQKEEDS
Run BLAST on NCBI

transcript from alignment at sc0000550:73116..73515

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025906 ID=TCONS_00025906|Name=TCONS_00025906|organism=Clytia hemisphaerica|type=transcript|length=400bp|location=Sequence derived from alignment at sc0000550:73116..73515 (Clytia hemisphaerica)
TTACGATTCATGAATCTTCTTCCTTTTGAGTTTTAACTGTTTCTTCTATA
TTTTCTTCAACATCTAAATGTTCTTGTTCAGGGGCGGCGGCAATGGGTGG
TGCATTATTTGGTTGAATTTGTGCCACTATTTCTTTGGGAGGGCGGTAGG
GTGGATCATAAGGAGCTACATTTTGCAGCAACGCTAAGGTTCCATCTACA
TCAGGAGCTATGATAATTTCAACACCTTTCACACGCATGCGTATAAATTT
CAATTCGTCATTCGGGTCCATTATTTTGACAGCTTTTCGAGCTGTGTAAG
TCAAAGATTGAAAAGCGTTTCGATATAGTTGCGCACGCGCATTATCAATT
GTCGTGTGAACGATAATACCATTCGAATCGTAGGAAATGAGCTCTTTAAC

Coding sequence (CDS) from alignment at sc0000550:73116..73515

>TCONS_00025906 ID=TCONS_00025906|Name=TCONS_00025906|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at sc0000550:73116..73515 (Clytia hemisphaerica)
TCATGAATCTTCTTCCTTTTGAGTTTTAACTGTTTCTTCTATATTTTCTT
CAACATCTAAATGTTCTTGTTCAGGGGCGGCGGCAATGGGTGGTGCATTA
TTTGGTTGAATTTGTGCCACTATTTCTTTGGGAGGGCGGTAGGGTGGATC
ATAAGGAGCTACATTTTGCAGCAACGCTAAGGTTCCATCTACATCAGGAG
CTATGATAATTTCAACACCTTTCACACGCATGCGTATAAATTTCAATTCG
TCATTCGGGTCCATTATTTTGACAGCTTTTCGAGCTGTGTAAGTCAAAGA
TTGAAAAGCGTTTCGATATAGTTGCGCACGCGCATTATCAATTGTCGTGT
GAACGATAATACCATTCGAATCGTAGGAAATGAGCTCTTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014564XLOC_014564Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025906-exon-sc0000550-1491911889:73116..73515TCONS_00025906-exon-sc0000550-1491911889:73116..73515Clytia hemisphaericaexon
TCONS_00025906-exon-sc0000550-1510915933:73116..73515TCONS_00025906-exon-sc0000550-1510915933:73116..73515Clytia hemisphaericaexon
TCONS_00025906-exon-sc0000550-1575043694:73116..73515TCONS_00025906-exon-sc0000550-1575043694:73116..73515Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025906-proteinTCONS_00025906-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000550supercontigsc0000550:73116..73515 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.371495	0.543399	0	0	0	0	0	0	0	0	0	0.123707	0.988278	2.05267	0.527367	0.792324	0.836639	3.43011	1.77708	2.68607	2.69387	4.46751	6.38923	9.4876	7.57829	11.747	0.509393	0.271819	3.50481	5.88139
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004942Roadblock/LAMTOR2_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025906 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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