|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025907 ID=TCONS_00025907|Name=TCONS_00025907|organism=Clytia hemisphaerica|type=transcript|length=3978bp agccgGATAAACACGAGAAAAATTGCTCATAAAAATTTGAGTAGAGTAGA CTAATAGGGACATTGTTTacattattttcttataaagtccTATTAAGTTG TTGGATTGGCTAAGAATAGTTACAGCTTAGTTTTTGTTTCGTATATGCTA TTTTTCGTGTTTATTTAGCATTTTAAGAAGTTTCACAAACTAGTTCCTGT TAAAAGGTGTTATATGTTctattaaaaaagaagaaacaaatgCTTATAGA GAATCTGCGCATGAAGGTATCCCTTCATAAGTAATAATTTGACACAAAGA TAAAATCTGAGTGGTTATATTTTTCTGATATGGCAAAAATAATTCTTTGG GAATAGTGTGAAAAGGTGTAAATAAAGTTGCTCCATATTGAACTGTcttt aaaattgaaacatgGCATTTTGGATTAAGGATTCCCCTAGTAACGGCGAG TGAAGCGGGAAAAGCTCATTAACagcaaaacattttaagaaatgGACAGT AAAAGTGTTGAATAATGGGTCCGATATTGAAATTTACGATACATAGGGAG CGTACGGATATCACAAATCACGAGAGAGGATATTAAATGATTTAAAAGCA TGTATCATTCATATTATTCTCTCATAAAATAAAGTTTCGTCACAAAATGT ATGAATCAGCATGACTTTTTCTTAATAAATTGACACTTTGTTTGACAGCA TATCATATCCTTTATgctactttaaaaaaaatattagtttttttttttgg aaatgaatATAATTGGAAACATGAATGTTTGACTGGTCATTTTTATTGTT GAAtgcattaaaaattgaaatgctGATTTGGCGTCTTTCTATCCACTGTA TCTTTTAacacaatagaaaaaaaaaatgcaagcatgtaaaatattttaaa atgactAATTAACAAAGCATGAAgaattcttctttttaaagCATTAATTG CTCGTCTAAATTGCActtattattgttgttattataACTTAAGGGCCTAC AAATCAATTTGATAGTATTGTTTCTTTAACCATACAGTAATGTTTACctc gtttttttttagtttaagaaataaatcactTTTTTCTACAGAGCTTCTTG CTCAAAAGGAAAGGAGAATTAATGATGTATACAGATTTAAAATTTGCACT TCTAAGTAAACTTGATGAGTAATATCAGTCAGGAGCATATCATATCTACG TTTAAAATTCGAAAACATGTCGAACTAAACGGTCTAAACAATTgattata ttcatgatatgcaccaccgGAGAGTCTtgtgaaagttttcaaaatttttc acccaatatgtcacttaaacaatagaaaaagtgacgtattgggtggaaat tttttgaaaactctcAGAAGACTCTTCATTGTTGCATATCATTGAATAGA CCAATCTAGGGCCTCTTATTTACTTCTAATAGACCCATTTTTTATGATAG ATTAAGCTCAAAGATTTTGTTTCAAgacaaaaaagatctttttttttgtg atttcccAGGGATTTCGTTATTATTTTTTGGAGATTCCAAGTTAAATAAT TATTGAAAGTCCACAACAGGGACAATTACTCTTGATGTGAAATTTTTCCA TGGCCTGTGTATTGGCCTAAAAAACTGTTGACATGATGGCTTTAGCTTTG TTACTCTTTTACTattattacaaaaattaaaacattttaaataaaGTTTT CTATCatactaaaaaaaacaaaaaaaatgagaCAATGATAATGttacttt ttctttaaaactaaaaaatgtaTGCATATCTTATCAAAAAATATTAGACT GCAAAGTTTGGTGAGGCATAGTATGTAGTTACTTTTGCAGCCTGTAGAAA TTGAGGCGTGTGGTAGCACAGGCACATTTTCCAAACAGTaatatttttgg ggaaattccgaCCACACGtctgtatttttcaaatgacaaagccTGCATTT GTTCCTTAAAAGAAGTAAGAGATATAAAAACACTACCATAACAGCAAATA TAAGTAAACAAAAATGTAAGACCAGTCATAACAAAAATTGATAATCAGGT TACTCCCATAAATGCTCTTGTTCAACATGTTTTTCACAGTATTAAAACtg cgaaaaaataattttgctgGAATTGGCAGGTGCAAAAATTAGTAGATAAA TAGCTTAATTGCACGTTTTCTATTCTAAAAATAAACCTTTAAGATAACAC AAGAGTCCAATTAATATCATACTTGAGTTAAAATTTATAAAGTGTTTGAA AAATCACTACAATCACTGCTAATGATAACATACAAGACTTCAAAATAGCA TACAAAACGCAGCAGACAATTTCATATATTAATATTATTCATCTATTAAA ATTGCATGCACTCCATCCAAAAAAATAGAACGATGATGTAATTGAGTTAA GTGTACACAGCCTTATAAAactacaaagaaaagaaaaaacagcACCAAAA ATCAAGACCATAATTTGACAGATTGATCCCAGCTACCAGTTGCAAGATAA GAACCATCTGATGAAAGTTTCAAAAcattgactttgttttcatgtGAGTA CATACATCCACAATGGGACCCTTTTAATGTGTCCCATACATGGAACGAAT GGTCACCATACCCCACAAATAATAATCGTCCATTCAGTGAAAAGTCTAAC GAGCATGCCGGAAAAAGGATACTGTTTCTTTTGAATAAAGCTAACCTGGC GTTCATTCGTAAATCAAATAATTGACATGTCATATCATCAGAAACAGATG CTACAGCATCACCACTTGGAAAAAAACGAACTTGATTGACTTCATCAGTA TGGCTGTAAAAAGACTGGACACAGTTACCAGTCCGCATGTCCCAAACACC AACTTGATGATCTGCTGATCCAGTCGCAAAACAGTGTCCTGATGATTTCT GAAAATCAAGGCTGGTCACATCTGCAGAATGTCCTTTAAAATCACGGATC AAATGTGAAGATTCAACATCCCATAAACCACTTGTTTTATCACTACTTGC AGTTAGAATCTGATGATCTGAACTTGTAAACATACATGATAACACGTAAC TTTGATGCTGTGCTACATGTTGAGTTTCAACAGTTAATTGTTTTCCTCTT GGGATTTTGTAAACGTCGCATTTACTGTCAAGCCCTCCAGCGGCTATAAG ACTTTGAGAGGGTGAAAAAGCAGCGCTAAATACCCAAGTACAGGGTGTCT GTACAGCATATATTCGATCCTTATTTACTACATCCCATATACACAAATGT CCACTTTGAAGGCTTGTCACAATAAGTTTTGAATCAAGTGACCAGTCTAG AGATAAAACTTTGGATTCTTCTTCCAAAACTTtcttgtttttcaataaaa tttgtgGTACCTCAGCTACATCTTCAGTTAAGGTGTTAATATCAAAAGCG AATGAACTAGAATGAGAATTACTTAATCTCTCAATACTTGAATTATCAAC TTTTAAACTATTTGTTGACAAAAGATTGCATGAAGGATTTATTGCTTTCT CTGACAAGGTTGACGTTGAACGATTGGTTAGAGATGGTTTTGGTGTTGTT GGCGGAGGTACTTTCCCATTTAGAGAAATTGCGCTGACACCTTTTTCCAA TAATGTATTATTGGCTGTCCCATTGTGGCCCTGTTTCTTGGAAACACTTT GGGACTTGATGCGTGCCAGCGGAGAATTATCCAGCTTTAATAATGGTATT TTATCTGCATCACCACTTATCACATCACTGTTATTAGTGTTATCTGATAA TTTGACAACTGAAGCCATAAAGCCatataataaatttttatttacttttt ttgctgtAAGAAaggataaaacaaaagattaggTATCCATCATCAAGCAA CCAAGTAAATATTGCAAAAGACACAATGTCAACAATcaagaaattaacaa aaaaacttATGTTTATTCAATATAGTTTTGATCTAAACAAAATTTCTAAG ATACATTCTGGTTGGTATAGTATCTCAG Run BLAST on NCBI protein sequence of TCONS_00025907-protein >TCONS_00025907-protein ID=TCONS_00025907-protein|Name=TCONS_00025907-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp
MASVVKLSDNTNNSDVISGDADKIPLLKLDNSPLARIKSQSVSKKQGHNG TANNTLLEKGVSAISLNGKVPPPTTPKPSLTNRSTSTLSEKAINPSCNLL STNSLKVDNSSIERLSNSHSSSFAFDINTLTEDVAEVPQILLKNKKVLEE ESKVLSLDWSLDSKLIVTSLQSGHLCIWDVVNKDRIYAVQTPCTWVFSAA FSPSQSLIAAGGLDSKCDVYKIPRGKQLTVETQHVAQHQSYVLSCMFTSS DHQILTASSDKTSGLWDVESSHLIRDFKGHSADVTSLDFQKSSGHCFATG SADHQVGVWDMRTGNCVQSFYSHTDEVNQVRFFPSGDAVASVSDDMTCQL FDLRMNARLALFKRNSILFPACSLDFSLNGRLLFVGYGDHSFHVWDTLKG SHCGCMYSHENKVNVLKLSSDGSYLATGSWDQSVKLWS Run BLAST on NCBI transcript from alignment at sc0000550:114654..118631 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025907 ID=TCONS_00025907|Name=TCONS_00025907|organism=Clytia hemisphaerica|type=transcript|length=3978bp|location=Sequence derived from alignment at sc0000550:114654..118631 (Clytia hemisphaerica) CTGAGATACTATACCAACCAGAATGTATCTTAGAAATTTTGTTTAGATCA
AAACTATATTGAATAAACATaagtttttttgttaatttcttgATTGTTGA
CATTGTGTCTTTTGCAATATTTACTTGGTTGCTTGATGATGGATAcctaa
tcttttgttttatcctTTCTTacagcaaaaaaagtaaataaaaatttatt
atatGGCTTTATGGCTTCAGTTGTCAAATTATCAGATAACACTAATAACA
GTGATGTGATAAGTGGTGATGCAGATAAAATACCATTATTAAAGCTGGAT
AATTCTCCGCTGGCACGCATCAAGTCCCAAAGTGTTTCCAAGAAACAGGG
CCACAATGGGACAGCCAATAATACATTATTGGAAAAAGGTGTCAGCGCAA
TTTCTCTAAATGGGAAAGTACCTCCGCCAACAACACCAAAACCATCTCTA
ACCAATCGTTCAACGTCAACCTTGTCAGAGAAAGCAATAAATCCTTCATG
CAATCTTTTGTCAACAAATAGTTTAAAAGTTGATAATTCAAGTATTGAGA
GATTAAGTAATTCTCATTCTAGTTCATTCGCTTTTGATATTAACACCTTA
ACTGAAGATGTAGCTGAGGTACcacaaattttattgaaaaacaagaAAGT
TTTGGAAGAAGAATCCAAAGTTTTATCTCTAGACTGGTCACTTGATTCAA
AACTTATTGTGACAAGCCTTCAAAGTGGACATTTGTGTATATGGGATGTA
GTAAATAAGGATCGAATATATGCTGTACAGACACCCTGTACTTGGGTATT
TAGCGCTGCTTTTTCACCCTCTCAAAGTCTTATAGCCGCTGGAGGGCTTG
ACAGTAAATGCGACGTTTACAAAATCCCAAGAGGAAAACAATTAACTGTT
GAAACTCAACATGTAGCACAGCATCAAAGTTACGTGTTATCATGTATGTT
TACAAGTTCAGATCATCAGATTCTAACTGCAAGTAGTGATAAAACAAGTG
GTTTATGGGATGTTGAATCTTCACATTTGATCCGTGATTTTAAAGGACAT
TCTGCAGATGTGACCAGCCTTGATTTTCAGAAATCATCAGGACACTGTTT
TGCGACTGGATCAGCAGATCATCAAGTTGGTGTTTGGGACATGCGGACTG
GTAACTGTGTCCAGTCTTTTTACAGCCATACTGATGAAGTCAATCAAGTT
CGTTTTTTTCCAAGTGGTGATGCTGTAGCATCTGTTTCTGATGATATGAC
ATGTCAATTATTTGATTTACGAATGAACGCCAGGTTAGCTTTATTCAAAA
GAAACAGTATCCTTTTTCCGGCATGCTCGTTAGACTTTTCACTGAATGGA
CGATTATTATTTGTGGGGTATGGTGACCATTCGTTCCATGTATGGGACAC
ATTAAAAGGGTCCCATTGTGGATGTATGTACTCacatgaaaacaaagtca
atgTTTTGAAACTTTCATCAGATGGTTCTTATCTTGCAACTGGTAGCTGG
GATCAATCTGTCAAATTATGGTCTTGATTTTTGGTgctgttttttctttt
ctttgtagtTTTATAAGGCTGTGTACACTTAACTCAATTACATCATCGTT
CTATTTTTTTGGATGGAGTGCATGCAATTTTAATAGATGAATAATATTAA
TATATGAAATTGTCTGCTGCGTTTTGTATGCTATTTTGAAGTCTTGTATG
TTATCATTAGCAGTGATTGTAGTGATTTTTCAAACACTTTATAAATTTTA
ACTCAAGTATGATATTAATTGGACTCTTGTGTTATCTTAAAGGTTTATTT
TTAGAATAGAAAACGTGCAATTAAGCTATTTATCTACTAATTTTTGCACC
TGCCAATTCcagcaaaattattttttcgcaGTTTTAATACTGTGAAAAAC
ATGTTGAACAAGAGCATTTATGGGAGTAACCTGATTATCAATTTTTGTTA
TGACTGGTCTTACATTTTTGTTTACTTATATTTGCTGTTATGGTAGTGTT
TTTATATCTCTTACTTCTTTTAAGGAACAAATGCAggctttgtcatttga
aaaatacagaCGTGTGGtcggaatttccccaaaaatattACTGTTTGGAA
AATGTGCCTGTGCTACCACACGCCTCAATTTCTACAGGCTGCAAAAGTAA
CTACATACTATGCCTCACCAAACTTTGCAGTCTAATATTTTTTGATAAGA
TATGCAtacattttttagttttaaagaaaaagtaaCATTATCATTGtctc
attttttttgttttttttagtatGATAGAAAACtttatttaaaatgtttt
aatttttgtaataatAGTAAAAGAGTAACAAAGCTAAAGCCATCATGTCA
ACAGTTTTTTAGGCCAATACACAGGCCATGGAAAAATTTCACATCAAGAG
TAATTGTCCCTGTTGTGGACTTTCAATAATTATTTAACTTGGAATCTCCA
AAAAATAATAACGAAATCCCTgggaaatcacaaaaaaaaagatctttttt
gtcTTGAAACAAAATCTTTGAGCTTAATCTATCATAAAAAATGGGTCTAT
TAGAAGTAAATAAGAGGCCCTAGATTGGTCTATTCAATGATATGCAACAA
TGAAGAGTCTTCTgagagttttcaaaaaatttccacccaatacgtcactt
tttctattgtttaagtgacatattgggtgaaaaattttgaaaactttcac
aAGACTCTCcggtggtgcatatcatgaatataatcAATTGTTTAGACCGT
TTAGTTCGACATGTTTTCGAATTTTAAACGTAGATATGATATGCTCCTGA
CTGATATTACTCATCAAGTTTACTTAGAAGTGCAAATTTTAAATCTGTAT
ACATCATTAATTCTCCTTTCCTTTTGAGCAAGAAGCTCTGTAGAAAAAag
tgatttatttcttaaactaaaaaaaaacgagGTAAACATTACTGTATGGT
TAAAGAAACAATACTATCAAATTGATTTGTAGGCCCTTAAGTtataataa
caacaataataagTGCAATTTAGACGAGCAATTAATGctttaaaaagaag
aattcTTCATGCTTTGTTAATTagtcattttaaaatattttacatgcttg
cattttttttttctattgtgtTAAAAGATACAGTGGATAGAAAGACGCCA
AATCagcatttcaatttttaatgcaTTCAACAATAAAAATGACCAGTCAA
ACATTCATGTTTCCAATTATattcatttccaaaaaaaaaaactaatattt
tttttaaagtagcATAAAGGATATGATATGCTGTCAAACAAAGTGTCAAT
TTATTAAGAAAAAGTCATGCTGATTCATACATTTTGTGACGAAACTTTAT
TTTATGAGAGAATAATATGAATGATACATGCTTTTAAATCATTTAATATC
CTCTCTCGTGATTTGTGATATCCGTACGCTCCCTATGTATCGTAAATTTC
AATATCGGACCCATTATTCAACACTTTTACTGTCcatttcttaaaatgtt
ttgctGTTAATGAGCTTTTCCCGCTTCACTCGCCGTTACTAGGGGAATCC
TTAATCCAAAATGCcatgtttcaattttaaagACAGTTCAATATGGAGCA
ACTTTATTTACACCTTTTCACACTATTCCCAAAGAATTATTTTTGCCATA
TCAGAAAAATATAACCACTCAGATTTTATCTTTGTGTCAAATTATTACTT
ATGAAGGGATACCTTCATGCGCAGATTCTCTATAAGcatttgtttcttct
tttttaatagAACATATAACACCTTTTAACAGGAACTAGTTTGTGAAACT
TCTTAAAATGCTAAATAAACACGAAAAATAGCATATACGAAACAAAAACT
AAGCTGTAACTATTCTTAGCCAATCCAACAACTTAATAggactttataag
aaaataatgtAAACAATGTCCCTATTAGTCTACTCTACTCAAATTTTTAT
GAGCAATTTTTCTCGTGTTTATCcggct Coding sequence (CDS) from alignment at sc0000550:114654..118631 >TCONS_00025907 ID=TCONS_00025907|Name=TCONS_00025907|organism=Clytia hemisphaerica|type=CDS|length=1317bp|location=Sequence derived from alignment at sc0000550:114654..118631 (Clytia hemisphaerica) ATGGCTTCAGTTGTCAAATTATCAGATAACACTAATAACAGTGATGTGAT AAGTGGTGATGCAGATAAAATACCATTATTAAAGCTGGATAATTCTCCGC TGGCACGCATCAAGTCCCAAAGTGTTTCCAAGAAACAGGGCCACAATGGG ACAGCCAATAATACATTATTGGAAAAAGGTGTCAGCGCAATTTCTCTAAA TGGGAAAGTACCTCCGCCAACAACACCAAAACCATCTCTAACCAATCGTT CAACGTCAACCTTGTCAGAGAAAGCAATAAATCCTTCATGCAATCTTTTG TCAACAAATAGTTTAAAAGTTGATAATTCAAGTATTGAGAGATTAAGTAA TTCTCATTCTAGTTCATTCGCTTTTGATATTAACACCTTAACTGAAGATG TAGCTGAGGTACcacaaattttattgaaaaacaagaAAGTTTTGGAAGAA GAATCCAAAGTTTTATCTCTAGACTGGTCACTTGATTCAAAACTTATTGT GACAAGCCTTCAAAGTGGACATTTGTGTATATGGGATGTAGTAAATAAGG ATCGAATATATGCTGTACAGACACCCTGTACTTGGGTATTTAGCGCTGCT TTTTCACCCTCTCAAAGTCTTATAGCCGCTGGAGGGCTTGACAGTAAATG CGACGTTTACAAAATCCCAAGAGGAAAACAATTAACTGTTGAAACTCAAC ATGTAGCACAGCATCAAAGTTACGTGTTATCATGTATGTTTACAAGTTCA GATCATCAGATTCTAACTGCAAGTAGTGATAAAACAAGTGGTTTATGGGA TGTTGAATCTTCACATTTGATCCGTGATTTTAAAGGACATTCTGCAGATG TGACCAGCCTTGATTTTCAGAAATCATCAGGACACTGTTTTGCGACTGGA TCAGCAGATCATCAAGTTGGTGTTTGGGACATGCGGACTGGTAACTGTGT CCAGTCTTTTTACAGCCATACTGATGAAGTCAATCAAGTTCGTTTTTTTC CAAGTGGTGATGCTGTAGCATCTGTTTCTGATGATATGACATGTCAATTA TTTGATTTACGAATGAACGCCAGGTTAGCTTTATTCAAAAGAAACAGTAT CCTTTTTCCGGCATGCTCGTTAGACTTTTCACTGAATGGACGATTATTAT TTGTGGGGTATGGTGACCATTCGTTCCATGTATGGGACACATTAAAAGGG TCCCATTGTGGATGTATGTACTCacatgaaaacaaagtcaatgTTTTGAA ACTTTCATCAGATGGTTCTTATCTTGCAACTGGTAGCTGGGATCAATCTG TCAAATTATGGTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00025907-exon-sc0000550-1491911889:114654..118631 | TCONS_00025907-exon-sc0000550-1491911889:114654..118631 | Clytia hemisphaerica | exon |
TCONS_00025907-exon-sc0000550-1510915933:114654..118631 | TCONS_00025907-exon-sc0000550-1510915933:114654..118631 | Clytia hemisphaerica | exon |
TCONS_00025907-exon-sc0000550-1575043694:114654..118631 | TCONS_00025907-exon-sc0000550-1575043694:114654..118631 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000550 | supercontig | sc0000550:114654..118631 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00025907 vs. Swiss-Prot (Human)
Match: GNB5 (Guanine nucleotide-binding protein subunit beta-5 OS=Homo sapiens GN=GNB5 PE=1 SV=2) HSP 1 Score: 313.923 bits (803), Expect = 2.207e-95 Identity = 148/340 (43.53%), Postives = 225/340 (66.18%), Query Frame = -1
Query: 2455 SLKVDNSSIE-RLSNSHSSSFAFDINTLTEDVAEVPQILLKNKKVLEEE-SKVLSLDWSLDSKLIVTSLQSGHLCIWDVVNKDRIYAVQTPCTWVFSAAFSPSQSLIAAGGLDSKCDVYKIP--RGKQLTVETQHVAQHQSYVLSCMFTSSDHQILTASSDKTSGLWDVESSHLIRDFKGHSADVTSLDFQKS-SGHCFATGSADHQVGVWDMRTGNCVQSFYSHTDEVNQVRFFPSGDAVASVSDDMTCQLFDLRMNARLALFKRNSILFPACSLDFSLNGRLLFVGYGDHSFHVWDTLKGSHCGCMYSHENKVNVLKLSSDGSYLATGSWDQSVKLWS 3459
SLK + S++ +L + +++ + E V + Q ++K ++ L+ +KVL +DW D + IV+S Q G + +WD ++ +AV PCTWV + A++PS IA GGLD+KC VY + + + + + + VA H +Y+ +C FT+SD QILTAS D T LWDVES L++ F GH ADV LD S +G+ F +G D + VWDMR+G CVQ+F +H ++N VR++PSGDA AS SDD TC+L+DLR + +A++ + SI+F A S+DFSL+GRLLF GY D++ +VWD LKGS ++ HEN+V+ L++S DG+ +GSWD ++++W+
Sbjct: 56 SLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 395
The following BLAST results are available for this feature:
|