TCONS_00025912 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025912
Unique NameTCONS_00025912
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1159

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025912 ID=TCONS_00025912|Name=TCONS_00025912|organism=Clytia hemisphaerica|type=transcript|length=1159bp
CAAAACAATAGATGCTACGCCTTGCAATACAATTCAAGAAACACCCTACC
CAAGATGCATCAGTATTTGTTCTTTAACCCCAGAATGCCGTTCGTTTGAT
TATACTCCCTCGCTGCAAAGAAGTGGAATTTAtggagaatttcattttta
tgatattGATTTCGAATTCTATCAAGATCAACAAGTTGGAGGATTGAAAG
CAAGCAGCACAACAAAATATTATTCGATTTTGATGCTCAAAGATTGCGCC
GCTTGGTTCAATTATGGTGCACGGGAAGACGGCATTTACGATGTTTTTCT
ATTGGGGAAATACCGACGCCGTGTTTTTTGTTTGATGCAACACGCTGGTG
GCGGATGGATGGCCTTTCAGCGCCGTTTTGATGGATCTGTCAGATTCATG
AATCGTAACTGGAGAGAATTCAAAGAGGGGTTTGGGAACGAGGAAGGAGA
ATATTACCTTGGAAACGAGCTTCTCAATTTGTTGACAACGGATGAAGGAC
ATGATTGGTTGGTGAGAGGAACCAATTGGGATGGAATTACTCAAATGAAA
ATGATTCATAATGTCAtaatcgaaagtgaaactgatTGGTATCAACTAAA
CTACGATGCATCTGATATTGACTCGACCTTTTCTACCGTGTGGTATGGTG
AAGTCATGAGAGGGATGAAATTTTCTACATTTGACGAGGATCACGATATA
GCATCTACAAATAATTGTGCCGCTATACATGGTGGATGGTGGCATAAGAA
ATGTCATGGGGTAGCAATGAACGGTCCATACAGGGCCAACGTTCGTGACC
GTCCTTCTCACGATGCAAATGGTATTATATGGTGGAATTTCGATAATAAC
GGAAATCCGAAATACACAAATTTACAAAGCAGTTTGATCATGATTCGACC
CTCCTCTTTCTAACCATAAAGACTTTTTTCAGTACACTAGCAGAAGTTGT
ATTACCTGACGATTAGCGCTGCTACTTCCAAAATGAACTGGAATTGACAA
AGcgcgtgtatttaaaaaaaaccggACATACAGCACCATGGACAGTATTA
TGCTTAAAGAAAGGCTGGGCCAATGAATCacatttaatttcaaaacaaag
gctgtcATTTAAATAACAGCCTAATCGAAAAATTGAGAACAATTCGAAAC
GATctcact
Run BLAST on NCBI

protein sequence of TCONS_00025912-protein

>TCONS_00025912-protein ID=TCONS_00025912-protein|Name=TCONS_00025912-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
KTIDATPCNTIQETPYPRCISICSLTPECRSFDYTPSLQRSGIYGEFHFY
DIDFEFYQDQQVGGLKASSTTKYYSILMLKDCAAWFNYGAREDGIYDVFL
LGKYRRRVFCLMQHAGGGWMAFQRRFDGSVRFMNRNWREFKEGFGNEEGE
YYLGNELLNLLTTDEGHDWLVRGTNWDGITQMKMIHNVIIESETDWYQLN
YDASDIDSTFSTVWYGEVMRGMKFSTFDEDHDIASTNNCAAIHGGWWHKK
CHGVAMNGPYRANVRDRPSHDANGIIWWNFDNNGNPKYTNLQSSLIMIRP
SSF
Run BLAST on NCBI

transcript from alignment at sc0000550:142510..143668

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025912 ID=TCONS_00025912|Name=TCONS_00025912|organism=Clytia hemisphaerica|type=transcript|length=1159bp|location=Sequence derived from alignment at sc0000550:142510..143668 (Clytia hemisphaerica)
agtgagATCGTTTCGAATTGTTCTCAATTTTTCGATTAGGCTGTTATTTA
AATgacagcctttgttttgaaattaaatgtGATTCATTGGCCCAGCCTTT
CTTTAAGCATAATACTGTCCATGGTGCTGTATGTccggttttttttaaat
acacgcgCTTTGTCAATTCCAGTTCATTTTGGAAGTAGCAGCGCTAATCG
TCAGGTAATACAACTTCTGCTAGTGTACTGAAAAAAGTCTTTATGGTTAG
AAAGAGGAGGGTCGAATCATGATCAAACTGCTTTGTAAATTTGTGTATTT
CGGATTTCCGTTATTATCGAAATTCCACCATATAATACCATTTGCATCGT
GAGAAGGACGGTCACGAACGTTGGCCCTGTATGGACCGTTCATTGCTACC
CCATGACATTTCTTATGCCACCATCCACCATGTATAGCGGCACAATTATT
TGTAGATGCTATATCGTGATCCTCGTCAAATGTAGAAAATTTCATCCCTC
TCATGACTTCACCATACCACACGGTAGAAAAGGTCGAGTCAATATCAGAT
GCATCGTAGTTTAGTTGATACCAatcagtttcactttcgattaTGACATT
ATGAATCATTTTCATTTGAGTAATTCCATCCCAATTGGTTCCTCTCACCA
ACCAATCATGTCCTTCATCCGTTGTCAACAAATTGAGAAGCTCGTTTCCA
AGGTAATATTCTCCTTCCTCGTTCCCAAACCCCTCTTTGAATTCTCTCCA
GTTACGATTCATGAATCTGACAGATCCATCAAAACGGCGCTGAAAGGCCA
TCCATCCGCCACCAGCGTGTTGCATCAAACAAAAAACACGGCGTCGGTAT
TTCCCCAATAGAAAAACATCGTAAATGCCGTCTTCCCGTGCACCATAATT
GAACCAAGCGGCGCAATCTTTGAGCATCAAAATCGAATAATATTTTGTTG
TGCTGCTTGCTTTCAATCCTCCAACTTGTTGATCTTGATAGAATTCGAAA
TCaatatcataaaaatgaaattctccaTAAATTCCACTTCTTTGCAGCGA
GGGAGTATAATCAAACGAACGGCATTCTGGGGTTAAAGAACAAATACTGA
TGCATCTTGGGTAGGGTGTTTCTTGAATTGTATTGCAAGGCGTAGCATCT
ATTGTTTTG

Coding sequence (CDS) from alignment at sc0000550:142510..143668

>TCONS_00025912 ID=TCONS_00025912|Name=TCONS_00025912|organism=Clytia hemisphaerica|type=CDS|length=912bp|location=Sequence derived from alignment at sc0000550:142510..143668 (Clytia hemisphaerica)
TTAGAAAGAGGAGGGTCGAATCATGATCAAACTGCTTTGTAAATTTGTGT
ATTTCGGATTTCCGTTATTATCGAAATTCCACCATATAATACCATTTGCA
TCGTGAGAAGGACGGTCACGAACGTTGGCCCTGTATGGACCGTTCATTGC
TACCCCATGACATTTCTTATGCCACCATCCACCATGTATAGCGGCACAAT
TATTTGTAGATGCTATATCGTGATCCTCGTCAAATGTAGAAAATTTCATC
CCTCTCATGACTTCACCATACCACACGGTAGAAAAGGTCGAGTCAATATC
AGATGCATCGTAGTTTAGTTGATACCAatcagtttcactttcgattaTGA
CATTATGAATCATTTTCATTTGAGTAATTCCATCCCAATTGGTTCCTCTC
ACCAACCAATCATGTCCTTCATCCGTTGTCAACAAATTGAGAAGCTCGTT
TCCAAGGTAATATTCTCCTTCCTCGTTCCCAAACCCCTCTTTGAATTCTC
TCCAGTTACGATTCATGAATCTGACAGATCCATCAAAACGGCGCTGAAAG
GCCATCCATCCGCCACCAGCGTGTTGCATCAAACAAAAAACACGGCGTCG
GTATTTCCCCAATAGAAAAACATCGTAAATGCCGTCTTCCCGTGCACCAT
AATTGAACCAAGCGGCGCAATCTTTGAGCATCAAAATCGAATAATATTTT
GTTGTGCTGCTTGCTTTCAATCCTCCAACTTGTTGATCTTGATAGAATTC
GAAATCaatatcataaaaatgaaattctccaTAAATTCCACTTCTTTGCA
GCGAGGGAGTATAATCAAACGAACGGCATTCTGGGGTTAAAGAACAAATA
CTGATGCATCTTGGGTAGGGTGTTTCTTGAATTGTATTGCAAGGCGTAGC
ATCTATTGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014570XLOC_014570Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025912-proteinTCONS_00025912-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025912-exon-sc0000550-1491911889:142510..143668TCONS_00025912-exon-sc0000550-1491911889:142510..143668Clytia hemisphaericaexon
TCONS_00025912-exon-sc0000550-1510915933:142510..143668TCONS_00025912-exon-sc0000550-1510915933:142510..143668Clytia hemisphaericaexon
TCONS_00025912-exon-sc0000550-1575043694:142510..143668TCONS_00025912-exon-sc0000550-1575043694:142510..143668Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000550supercontigsc0000550:142510..143668 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.29876	0.254921	0.76111	0.827364	0.352533	0.198983	0.144039	0.0898982	0.0314699	0.194903	0	0.198972	0.223533	0.128967	0.127234	0.159299	1.00925	0.862041	0.27789	0.24925	4.65784	3.857	2.22659	5.45002	5.21244	7.1211	2.0483	0.382549	0.0829001	0.042231
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
IPR014715Fibrinogen_a/b/g_C_2
Blast
[Close]
BLAST of TCONS_00025912 vs. Swiss-Prot (Human)
Match: ANGL4 (Angiopoietin-related protein 4 OS=Homo sapiens GN=ANGPTL4 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.053e-18
Identity = 71/224 (31.70%), Postives = 112/224 (50.00%), Query Frame = 2 
Query:  233 MLKDCAAWFNYGAREDGIYDVFLLGKYRRRVFCLMQHAGGGWMAFQRRFDGSVRFMNRNWREFKXXXXXXXXXXXXXXXXXXXXTTDEGHDWLVRGTNWDGITQMKMIHNVIIESETDWYQLNYDASDIDSTFSTVWYGEVMRGMKFSTFDEDHDIASTNNCA-AIHGGWWHKKCHGVAMNGPYRANVRDRPSHDANGIIWWNFDNNGNPKYTNLQSSLIMIRP 901
            + +DC   F  G R+ G++++   G     V C M  + GGW   QRR DGSV F NR W  +K GFG+  GE++LG E ++ +T D      V+  +WDG  ++ +  +V +  E   Y L   A       +T      +  + FST+D+DHD+    NCA ++ GGWW   C    +NG Y  ++  +      GI W  +      +Y  LQ++ ++I+P
Sbjct:  184 LPRDCQELFQVGERQSGLFEIQPQGSPPFLVNCKMT-SDGGWTVIQRRHDGSVDF-NRPWEAYKAGFGDPHGEFWLGLEKVHSITGDRNSRLAVQLRDWDGNAEL-LQFSVHLGGEDTAYSLQLTAPVAGQLGATTVPPSGL-SVPFSTWDQDHDLRRDKNCAKSLSGGWWFGTCSHSNLNGQYFRSIPQQRQKLKKGIFWKTWRG----RYYPLQATTMLIQP 399
The following BLAST results are available for this feature:
BLAST of TCONS_00025912 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANGL41.053e-1831.70Angiopoietin-related protein 4 OS=Homo sapiens GN=... [more]
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