TCONS_00025918 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025918
Unique NameTCONS_00025918
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025918 ID=TCONS_00025918|Name=TCONS_00025918|organism=Clytia hemisphaerica|type=transcript|length=2276bp
tttaaacagcCCCCTCCCCCtcggccgaatagggttaagaaagCTTTTGt
ttgagcaaaaaaatcttACTGgataaaatgtttttgtttttagatgaATG
AGAAACAAAGTATAGCTTTAGTGAATGATCAATTAAAGATCCGACCGTAT
GTCAACAAAAGTCAGTTGAAAGATATTGCATTGAAATGTTTTGGCTTCGA
ACTGGATGAAGGAGTTGAGCCGATGGAAATGGTATCTTATGAGGATAGGA
ACTTTAGAATTCAAGGGAGATGTACAGGTGAAAAAGTTTCAAGATGTTTT
gtgatgaaaatatttaacaggGGAACTTCAAATGAAGACACTTTGGAACA
TattattaatttgattttatATAGCAAATCTAAATGCTCTCAACATTTTG
CTGTTCAAACTCCAATACCATCCATCAGTTCAAGTGACCAAAATATGAAA
TACATCTCATCCTATAATATCCCAATTCTTCCAAACGCATCATATGATGA
TTGTACTAAATCAAgtttgattgaaaaaggattactTGATATTAGTCCAA
CAGGACAAACGACTTGTTGCCATAATATTCGATTGCTGACTTATCTTGAA
GGAAGACCTCCCAAGCTTTCTGAAGAAAAAGTGACAGATGAGTTTGCTCA
AGATTGGGGTGCCACTTCAGGTCGACTTTGTAATGCACTGGAGgaggttc
caaaatcagaaaaagttgatCGAGAGAAATCAATTTGCAATTTAATCACT
GTtgggaaatatttgaaatccaCTTATCTAGAAGCCGTTAAGCAcgccaa
acaaaaacaaactttcacGGACATTATTGAGAAATTCGAAACACAGATCT
TACctcaacttgaaaaaaatgtcaAGAAATCCTACATACATGGTGATATA
AATGAAGTAAACCTTCTACTAGACTCAAGTGGAAAAATTGGTGGCGTCAT
TGACTTTGATGATGCTGTTTGGTCTTTTTCAATCGTTGACTTAGCTATCt
ctttcatgcatttttcctTGTATCTGGATGAAAATGCATTCActcataaa
atgaaaaaactttacCAAGGGTATACATCTGCTCGTCAAATCACTGATTT
AGAGAGAGACTTGCTTTATGATATAACTTTGATGAGCTATGCTCAAtggt
cagttttagcaagtcaCCAATACCATGTGTTAGACCCTGGCAATAAATAT
ATTCATGATTTTCTTCAGAAAAGTTGGCAAGGGTTAAGTTTATTGCTTTT
AATGAGTAAGGATatgtttttagaaaaagtatgCACTCAATAAGTGGTTG
TAAGGTTATtgataaaaccaaaatataaaaattataaaaagaaagtttca
taaaaatttgtatcgtaaaatatttcatagctTTAGCcaccatttttgtt
tacattttgtttacGTTTTTAACAGCTTAGCTACCATTTTCATTTAAGTA
TATTTTGCCAACTGAGGTCATGCTCTCAAAACCATGCTGTTTTTTGTTGC
CTTGACAACTTGGTGCATCAAGTGTATTTAAGGCTTAAAAAGGCTTAAAA
GGCATTCAGCTCTTCACTTGACTCATGAAAGCCCTGGAGTAAGGACCTCA
GCTCCAGACTGGAGTCACTCAAGTCAATTCAAATATCATAAACTCAAATC
ATTTAACAACTGAAGGCAAGTCATAGTCTAAGTTTGTTTTTCTCTCACAT
TTACCTGTATGGCAACACCTTCACAGTTTTCATTCATGGCCTAACTGGTA
CGTCAGCcatcttttttttgctttttttttctcactCACATTTACGTTAA
GGTTAAGTAGACATAGACATTATATATTTATATACTCATTCATAGCTCTT
ATATTCAGATTTTCATATTGTATTTCATGGTCTACTTGACCTCAGGCACT
CTGATTTCTGGACTTAAAGTCATATGAAGTCAAAATGGCAAAGTCAATTA
gccatttttcactcatttggactttgtcgtttttGCTCATTTTCGACTTA
GCCTCTGTCgtgtttcaattaaattctgGACACATCACCAAATTAAACCT
TGGTTCGTACAGACACCCGAGGTTACATAATCTCAGGAAGCCATTTATCA
CCTTCCCCGTTTCCCCATTTTCGCATGGTTGGAGTCGATATCAAATTATA
TTTGCTCTTCAGAAGGCTATATGACATTACCTCTTTTGTTTGACCCCTAC
TTTCAAACTCCTTATTTAATTACCTTCCTGTTACGTGCTGTTAGGacttt
cttatgttttattttatgattttgtt
Run BLAST on NCBI

protein sequence of TCONS_00025918-protein

>TCONS_00025918-protein ID=TCONS_00025918-protein|Name=TCONS_00025918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MNEKQSIALVNDQLKIRPYVNKSQLKDIALKCFGFELDEGVEPMEMVSYE
DRNFRIQGRCTGEKVSRCFVMKIFNRGTSNEDTLEHIINLILYSKSKCSQ
HFAVQTPIPSISSSDQNMKYISSYNIPILPNASYDDCTKSSLIEKGLLDI
SPTGQTTCCHNIRLLTYLEGRPPKLSEEKVTDEFAQDWGATSGRLCNALE
EVPKSEKVDREKSICNLITVGKYLKSTYLEAVKHAKQKQTFTDIIEKFET
QILPQLEKNVKKSYIHGDINEVNLLLDSSGKIGGVIDFDDAVWSFSIVDL
AISFMHFSLYLDENAFTHKMKKLYQGYTSARQITDLERDLLYDITLMSYA
QWSVLASHQYHVLDPGNKYIHDFLQKSWQGLSLLLLMSKDMFLEKVCTQ
Run BLAST on NCBI

transcript from alignment at sc0000555:53661..57261+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025918 ID=TCONS_00025918|Name=TCONS_00025918|organism=Clytia hemisphaerica|type=transcript|length=3601bp|location=Sequence derived from alignment at sc0000555:53661..57261+ (Clytia hemisphaerica)
tttaaacagcCCCCTCCCCCtcggccgaatagggttaagaaagCTTTTGt ttgagcaaaaaaatcttACTGgataaaatgtttttgtttttagatgaATG AGAAACAAAGTATAGCTTTAGTGAATGATCAATTAAAGATCCGACCGTAT GTCAACAAAAGTCAGTTGAAAGATATTGCATTGAAATGTTTTGGCTTCGA ACTGGATGAAGGAGTTGAGCCGATGGAAATGGTATCTTATGAGGATAGGA ACTTTAGAATTCAAGGTATTGCAAGCATGAttctcatttcaatttttttc tgaatttctaGCTGAATTAACAAGACTTTGGCAACAAAAATATGATATCA GGAAGGATTTATTTGATAGTCCTTTTCATGGTCAAAATTAATCACGAGAA TAATCAGGACTGATTACGCCCTAATGTTGACTTCCCGTTGGTAACAagta aaaaaatccaaaattttggacAAAATTCTATTCGGAGCATgttggtcctg attacccatgattcattttgaCTATGAAATGGCCTAAACTGAACTAGGGA AAACGACCACGTAAGAAACTCGCACTAATCCATCCACTTTCGAAAATAGC CACAAATAAACGTACTTTATTTTgatattcgaaaatctaatttttaaaaG GCACAATATATTGGTAAACAATATTCTACAAAATGGTTAAGGAGTCGTAA TGTACGATGTTAATACCTTTTCTTAATGTAACAGGTTCTGTaataaaaaa aaggaatttctatctgtaaacaatccccccattttgtttgtatattggAA ATTGAGGTATATTGCAGAcatcttttcaatatattgtgaGCACTTTACGA AATACTGCCGGCACTCGCCAATACATTATCTGATGTATTGATTAGTGTCA AGTATGTAGCTTTTTACTTAGCGATATTCAAATATTTCACAGAGTTTCTT CATTTCGTACCTTTCTGTTGCAAAGGTTCGAATGTTGTATCTTTAACAAC TAaattctttttaactttttcttattttacagGGAGATGTACAGGTGAAA AAGTTTCAAGATGTTTTgtgatgaaaatatttaacaggGGAACTTCAAAT GAAGACACTTTGGAACATattattaatttgattttatATAGCAAATCTAA ATGCTCTCAACATTTTGCTGTTCAAACTCCAATACCATCCATCAGTTCAA GTGACCAAAATATGAAATACATCTCATCCTATAATATCCCAATTCTTCCA AACGCATCATATGATGATTGTACTAAATCAAgtttgattgaaaaaggatt actTGATATTAGTCCAACAGGACAAACGACTTGTTGCCATAATATTCGAT TGCTGACTTATCTTGAAGGAAGACCTCCCAAGCTTTCTGAAGAAAAAGTG ACAGATGAGTTTGCTCAAGATTGGGGTGCCACTTCAGGTCGACTTTGTAA TGCACTGGAGGTATGATACatgtattttataaaaataaaacaattaaata aaCCCAGGGAAAGACATGTGACTATTATGTACGAATTATAAGGGTACCCA ATTTCATACCTCAAACAGATCCCAAAATCACTAAAATCGGGAATTTccct ctcaaagggtcacgatatTTACGATGTTGCTGAAATAAAACATATAAGCC AGATTATGATCTACGTGTAAATCCCTTTTATCTCTGATGATTTAGTGgat tgttaattttttataaactCAAATACTGaaaactcgaatgtctctttcAC TCGAACAGGTTTTCTGGACCATTTAGGTGATAAACCTTGTTAATAGTTTA TAaactctccataactcgaattttaGGGTCTTTATTTGCACCGAAGACAA TTTTTCAactgatttttatttttcataagaagTTCTACTGGATGCTCTAT TATGCTTatcctttttaaatttcaatgctttaaaaattctatttattatt tcaggaggttccaaaatcagaaaaagttgatCGAGAGAAATCAATTTGCA ATTTAATCACTGTtgggaaatatttgaaatccaCTTATCTAGAAGCCGTT AAGCAcgccaaacaaaaacaaactttcacGGACATTATTGAGAAATTCGA AACACAGATCTTACctcaacttgaaaaaaatgtcaAGAAATCCTACATAC ATGGTGATATAAATGAAGTAAACCTTCTACTAGACTCAAGTGGAAAAATT GGTGGCGTCATTGACTTTGATGATGCTGTTTGGTCTTTTTCAATCGTTGA CTTAGCTATCtctttcatgcatttttcctTGTATCTGGATGAAAATGCAT TCActcataaaatgaaaaaactttacCAAGGGTATACATCTGCTCGTCAA ATCACTGATTTAGAGAGAGACTTGCTTTATGATATAACTTTGATGAGCTA TGCTCAAtggtcagttttagcaagtcaCCAATACCATGTGTTAGACCCTG GCAATAAATATATTCATGATTTTCTTCAGAAAAGTTGGCAAGGGTTAAGT TTATTGCTTTTAATGAGTAAGGATatgtttttagaaaaagtatgCACTCA ATAAGTGGTTGTAAGGTTATtgataaaaccaaaatataaaaattataaaa agaaaatttcataaaaatttgtatNTAAGGTTATtgataaaaccaaaata taaaaattataaaaagaaagtttcataaaaatttgtatcgtaaaatattt catagctTTAGCcaccatttttgtttacattttgtttacGTTTTTAACAG CTTAGCTACCATTTTCATTTAAGTATATTTTGCCAACTGAGGTCATGCTC TCAAAACCATGCTGTTTTTTGTTGCCTTGACAACTTGGTGCATCAAGTGT ATTTAAGGCTTAAAAAGGCTTAAAAGGCATTCAGCTCTTCACTTGACTCA TGAAAGCCCTGGAGTAAGGACCTCAGCTCCAGACTGGAGTCACTCAAGTC AATTCAAATATCATAAACTCAAATCATTTAACAACTGAAGGCAAGTCATA GTCTAAGTTTGTTTTTCTCTCACATTTACCTGTATGGCAACACCTTCACA GTTTTCATTCATGGCCTAACTGGTACGTCAGCcatcttttttttgctttt tttttctcactCACATTTACGTTAAGGTTAAGTAGACATAGACATTATAT ATTTATATACTCATTCATAGCTCTTATATTCAGATTTTCATATTGTATTT CATGGTCTACTTGACCTCAGGCACTCTGATTTCTGGACTTAAAGTCATAT GAAGTCAAAATGGCAAAGTCAATTAgccatttttcactcatttggacttt gtcgtttttGCTCATTTTCGACTTAGCCTCTGTCgtgtttcaattaaatt ctgGACACATCACCAAATTAAACCTTGGTTCGTACAGACACCCGAGGTTA CATAATCTCAGGAAGCCATTTATCACCTTCCCCGTTTCCCCATTTTCGCA TGGTTGGAGTCGATATCAAATTATATTTGCTCTTCAGAAGGCTATATGAC ATTACCTCTTTTGTTTGACCCCTACTTTCAAACTCCTTATTTAATTACCT TCCTGTTACGTGCTGTTAGGactttcttatgttttattttatgattttgt t

Coding sequence (CDS) from alignment at sc0000555:53661..57261+

>TCONS_00025918 ID=TCONS_00025918|Name=TCONS_00025918|organism=Clytia hemisphaerica|type=CDS|length=3600bp|location=Sequence derived from alignment at sc0000555:53661..57261+ (Clytia hemisphaerica)
atgaATGAGAAACAAAGTATAGCTTTAGTGAATGATCAATTAAAGATCCG
ACCGTATGTCAACAAAAGTCAGTTGAAAGATATTGCATTGAAATGTTTTG
GCTTCGAACTGGATGAAGGAGTTGAGCCGATGGAAATGGTATCTTATGAG
GATAGGAACTTTAGAATTCAAGGGAGATGTACAGGTGAAAAAGTTTCAAG
ATGTTTTgtgatgaaaatatttaacaggGGAACTTCAAATGAAGACACTT
TGGAACATattattaatttgattttatATAGCAAATCTAAATGCTCTCAA
CATTTTGCTGTTCAAACTCCAATACCATCCATCAGTTCAAGTGACCAAAA
TATGAAATACATCTCATCCTATAATATCCCAATTCTTCCAAACGCATCAT
ATGATGATTGTACTAAATCAAgtttgattgaaaaaggattactTGATATT
AGTCCAACAGGACAAACGACTTGTTGCCATAATATTCGATTGCTGACTTA
TCTTGAAGGAAGACCTCCCAAGCTTTCTGAAGAAAAAGTGACAGATGAGT
TTGCTCAAGATTGGGGTGCCACTTCAGGTCGACTTTGTAATGCACTGGAG
gaggttccaaaatcagaaaaagttgatCGAGAGAAATCAATTTGCAATTT
AATCACTGTtgggaaatatttgaaatccaCTTATCTAGAAGCCGTTAAGC
AcgccaaacaaaaacaaactttcacGGACATTATTGAGAAATTCGAAACA
CAGATCTTACctcaacttgaaaaaaatgtcaAGAAATCCTACATACATGG
TGATATAAATGAAGTAAACCTTCTACTAGACTCAAGTGGAAAAATTGGTG
GCGTCATTGACTTTGATGATGCTGTTTGGTCTTTTTCAATCGTTGACTTA
GCTATCtctttcatgcatttttcctTGTATCTGGATGAAAATGCATTCAc
tcataaaatgaaaaaactttacCAAGGGTATACATCTGCTCGTCAAATCA
CTGATTTAGAGAGAGACTTGCTTTATGATATAACTTTGATGAGCTATGCT
CAAtggtcagttttagcaagtcaCCAATACCATGTGTTAGACCCTGGCAA
TAAATATATTCATGATTTTCTTCAGAAAAGTTGGCAAGGGTTAAGTTTAT
TGCTTTTAATGAGTAAGGATatgtttttagaaaaagtatgCACTCAATAA
atgaATGAGAAACAAAGTATAGCTTTAGTGAATGATCAATTAAAGATCCG
ACCGTATGTCAACAAAAGTCAGTTGAAAGATATTGCATTGAAATGTTTTG
GCTTCGAACTGGATGAAGGAGTTGAGCCGATGGAAATGGTATCTTATGAG
GATAGGAACTTTAGAATTCAAGGGAGATGTACAGGTGAAAAAGTTTCAAG
ATGTTTTgtgatgaaaatatttaacaggGGAACTTCAAATGAAGACACTT
TGGAACATattattaatttgattttatATAGCAAATCTAAATGCTCTCAA
CATTTTGCTGTTCAAACTCCAATACCATCCATCAGTTCAAGTGACCAAAA
TATGAAATACATCTCATCCTATAATATCCCAATTCTTCCAAACGCATCAT
ATGATGATTGTACTAAATCAAgtttgattgaaaaaggattactTGATATT
AGTCCAACAGGACAAACGACTTGTTGCCATAATATTCGATTGCTGACTTA
TCTTGAAGGAAGACCTCCCAAGCTTTCTGAAGAAAAAGTGACAGATGAGT
TTGCTCAAGATTGGGGTGCCACTTCAGGTCGACTTTGTAATGCACTGGAG
gaggttccaaaatcagaaaaagttgatCGAGAGAAATCAATTTGCAATTT
AATCACTGTtgggaaatatttgaaatccaCTTATCTAGAAGCCGTTAAGC
AcgccaaacaaaaacaaactttcacGGACATTATTGAGAAATTCGAAACA
CAGATCTTACctcaacttgaaaaaaatgtcaAGAAATCCTACATACATGG
TGATATAAATGAAGTAAACCTTCTACTAGACTCAAGTGGAAAAATTGGTG
GCGTCATTGACTTTGATGATGCTGTTTGGTCTTTTTCAATCGTTGACTTA
GCTATCtctttcatgcatttttcctTGTATCTGGATGAAAATGCATTCAc
tcataaaatgaaaaaactttacCAAGGGTATACATCTGCTCGTCAAATCA
CTGATTTAGAGAGAGACTTGCTTTATGATATAACTTTGATGAGCTATGCT
CAAtggtcagttttagcaagtcaCCAATACCATGTGTTAGACCCTGGCAA
TAAATATATTCATGATTTTCTTCAGAAAAGTTGGCAAGGGTTAAGTTTAT
TGCTTTTAATGAGTAAGGATatgtttttagaaaaagtatgCACTCAATAA
atgaATGAGAAACAAAGTATAGCTTTAGTGAATGATCAATTAAAGATCCG
ACCGTATGTCAACAAAAGTCAGTTGAAAGATATTGCATTGAAATGTTTTG
GCTTCGAACTGGATGAAGGAGTTGAGCCGATGGAAATGGTATCTTATGAG
GATAGGAACTTTAGAATTCAAGGGAGATGTACAGGTGAAAAAGTTTCAAG
ATGTTTTgtgatgaaaatatttaacaggGGAACTTCAAATGAAGACACTT
TGGAACATattattaatttgattttatATAGCAAATCTAAATGCTCTCAA
CATTTTGCTGTTCAAACTCCAATACCATCCATCAGTTCAAGTGACCAAAA
TATGAAATACATCTCATCCTATAATATCCCAATTCTTCCAAACGCATCAT
ATGATGATTGTACTAAATCAAgtttgattgaaaaaggattactTGATATT
AGTCCAACAGGACAAACGACTTGTTGCCATAATATTCGATTGCTGACTTA
TCTTGAAGGAAGACCTCCCAAGCTTTCTGAAGAAAAAGTGACAGATGAGT
TTGCTCAAGATTGGGGTGCCACTTCAGGTCGACTTTGTAATGCACTGGAG
gaggttccaaaatcagaaaaagttgatCGAGAGAAATCAATTTGCAATTT
AATCACTGTtgggaaatatttgaaatccaCTTATCTAGAAGCCGTTAAGC
AcgccaaacaaaaacaaactttcacGGACATTATTGAGAAATTCGAAACA
CAGATCTTACctcaacttgaaaaaaatgtcaAGAAATCCTACATACATGG
TGATATAAATGAAGTAAACCTTCTACTAGACTCAAGTGGAAAAATTGGTG
GCGTCATTGACTTTGATGATGCTGTTTGGTCTTTTTCAATCGTTGACTTA
GCTATCtctttcatgcatttttcctTGTATCTGGATGAAAATGCATTCAc
tcataaaatgaaaaaactttacCAAGGGTATACATCTGCTCGTCAAATCA
CTGATTTAGAGAGAGACTTGCTTTATGATATAACTTTGATGAGCTATGCT
CAAtggtcagttttagcaagtcaCCAATACCATGTGTTAGACCCTGGCAA
TAAATATATTCATGATTTTCTTCAGAAAAGTTGGCAAGGGTTAAGTTTAT
TGCTTTTAATGAGTAAGGATatgtttttagaaaaagtatgCACTCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014576XLOC_014576Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025918-proteinTCONS_00025918-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025918-exon-sc0000555-1491911889:53661..53925TCONS_00025918-exon-sc0000555-1491911889:53661..53925Clytia hemisphaericaexon
TCONS_00025918-exon-sc0000555-1510915933:53661..53925TCONS_00025918-exon-sc0000555-1510915933:53661..53925Clytia hemisphaericaexon
TCONS_00025918-exon-sc0000555-1575043694:53661..53925TCONS_00025918-exon-sc0000555-1575043694:53661..53925Clytia hemisphaericaexon
TCONS_00025918-exon-sc0000555-1491911889:54693..55120TCONS_00025918-exon-sc0000555-1491911889:54693..55120Clytia hemisphaericaexon
TCONS_00025918-exon-sc0000555-1510915933:54693..55120TCONS_00025918-exon-sc0000555-1510915933:54693..55120Clytia hemisphaericaexon
TCONS_00025918-exon-sc0000555-1575043694:54693..55120TCONS_00025918-exon-sc0000555-1575043694:54693..55120Clytia hemisphaericaexon
TCONS_00025918-exon-sc0000555-1491911889:55615..56225TCONS_00025918-exon-sc0000555-1491911889:55615..56225Clytia hemisphaericaexon
TCONS_00025918-exon-sc0000555-1510915933:55615..56225TCONS_00025918-exon-sc0000555-1510915933:55615..56225Clytia hemisphaericaexon
TCONS_00025918-exon-sc0000555-1575043694:55615..56225TCONS_00025918-exon-sc0000555-1575043694:55615..56225Clytia hemisphaericaexon
TCONS_00025918-exon-sc0000555-1491911889:56290..57261TCONS_00025918-exon-sc0000555-1491911889:56290..57261Clytia hemisphaericaexon
TCONS_00025918-exon-sc0000555-1510915933:56290..57261TCONS_00025918-exon-sc0000555-1510915933:56290..57261Clytia hemisphaericaexon
TCONS_00025918-exon-sc0000555-1575043694:56290..57261TCONS_00025918-exon-sc0000555-1575043694:56290..57261Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000555supercontigsc0000555:53661..57261 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.42506 1.66308 1.40405 0.734863 4.20405 3.35927 26.3702 28.5991 28.9956 25.8438 12.9313 15.8345 14.0513 12.8784 27.4613 21.8933 13.8426 11.3407 9.10035 11.9259 17.3539 17.5479 7.51615 10.4134 6.63812 6.19477 6.08203 2.71679 1.71747 1.52208
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002575Aminoglycoside_PTrfase
IPR011009Kinase-like_dom
Blast
BLAST of TCONS_00025918 vs. Swiss-Prot (Human)
Match: HYKK (Hydroxylysine kinase OS=Homo sapiens GN=HYKK PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.119e-17
Identity = 85/384 (22.14%), Postives = 173/384 (45.05%), Query Frame = 1
Query:  142 RPYVNKSQLKDIALKCFGFELDEGVEPMEMVSYEDRNFRIQGRCTGEKVSRCFVMKIFN-RGTSNEDTLEHIINLILYSKSKCSQHFAVQTPIPSISSSDQNMKYISSYNIPILPNASYDDCTKSSLIEKGLLDISPTGQTTCCHNIRLLTYLEGRPPKLSEEKVTDEFAQDWGATSGRLCNALEEV--PKSEKVDREKSICNLITVGKYLKSTYLEAVKHAKQKQTFTDIIEKFETQILPQLEKNVKKSYIHGDINEVNLLLDSSG--------KIGGVIDFDDAVWSFSIVDLAISFMHFSLYLDENAFTHKMKKLYQGYTSARQITDLERDLLYDITLMSYAQWSVLASHQYHVLDPGNKYIHDFLQKSWQGLSLLLLMSK 1260
            +P  ++ Q   +    FG ++ + V P+   SY+D+NF +    T +  +  +V+KI N + + N D +E   ++I++ K       A   P  S+  +                     D T S      L+ +  +G     + +RLLTYL GRP  ++E  V+ +   + G  + +L   L+    PK   + RE  I NL  V   L   YL A+   + ++    +I  F+ +++ +L  + ++   HGD+N+ N+L++SS         ++ G++DF D  + + + ++AI+ M+  + ++  +       +  G+ S   +T +E+  L+ +    + Q  V+A++   +      Y+    +  W+ L  +  M +
Sbjct:   14 KPTFSEEQASALVESVFGLKVSK-VRPLP--SYDDQNFHVYVSKTKDGPTE-YVLKISNTKASKNPDLIEVQNHIIMFLK-------AAGFPTASVCHTK-------------------GDNTAS------LVSVD-SGSEIKSYLVRLLTYLPGRP--IAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKNVP--LLEKYLYALGQNRNREIVEHVIHLFKEEVMTKL-SHFRECINHGDLNDHNILIESSKSASGNAEYQVSGILDFGDMSYGYYVFEVAITIMY--MMIESKSPIQVGGHVLAGFESITPLTAVEKGALFLLVCSRFCQSLVMAAYSCQLYPENKDYLMVTAKTGWKHLQQMFDMGQ 353          
The following BLAST results are available for this feature:
BLAST of TCONS_00025918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HYKK2.119e-1722.14Hydroxylysine kinase OS=Homo sapiens GN=HYKK PE=1 ... [more]
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