TCONS_00025956 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00025956
Unique Name	TCONS_00025956
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2572

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000556:88522..97772+
coding sequence from alignment at sc0000556:88522..97772+

transcript sequence

>TCONS_00025956 ID=TCONS_00025956|Name=TCONS_00025956|organism=Clytia hemisphaerica|type=transcript|length=2572bp
ggcggtcatcgaaaaaatgctctgttcgcgtcgcaacgggtgttaaaaat
gcatgcgggcggacgggcggcggtcaaaaacattcccagtTTTTTTTTGG
CAAGTAGTAGCTCAGGCGTCAGGGGCGATTTTTCGATGGTcatcagagca
attgagaaaaaagctatactttaaaagaacaaatagcttttcccagattt
ctttccgcatctccgcaccggaaaatcagcggaaaatttgatgcgggcag
gtgacgcgaatagaacaatttttcgatgaccgtcTAAGCTAAGCAAGCAG
GGGGCCGTTTTCGGAACTTAagaaattggttgttttttgccCTCAAAACA
CTGAATTATAAGAAGTTTAAAAAGCCCTTACATCTTCTACATTTCCTGTG
GTTCGATCTTTCCAGCAAAAGTGCATAAGAGAATCTTCACTTTGATGAAT
ATAGACTTGTCCTTTTCGCTTGTCAGGGGTGACTGTTGTTCCACGCATGT
TCATTTTCCCAGCTCTGAATTCAACCAGATATTTTGATGATCCAAGGGAA
GCAGAATTTCCAAATAACGCCATGATTGCAAAAGTGATAAATGGCTTTCT
TTCAGTGAAATCTATCCAAGCAAAAAATCAGTTAGTTTCACTCCCGGTCC
TGTTTGCTGTTTCTCATCCGCTAAATGTGGCCTTGACTTTAGTGTCCTGA
ACTCCCGTTGCCCGTAACCGCCGCTAAAACACCGAAAACATAACTTTGAC
GTATGAGAAAGTTTACAGTAATGAGGCAgcatattttatttgaaaggtTT
CGCGCCCCCTCGAAATGTTCGGTGTACTGAAGTTCTTCGTGTGCCCCTCG
CATTGCCCCATTTCCATGACTACGGAATACTCATTCGAGAAAAGCTCAAA
GATTCAGAACGTGGTCGAGCAGTCGAGCTGTAGTCGTTTAGTCGTTGAAC
CTTCATCATTTTCCATCCTAGACAGGGCCAAATCACTTTGAAATGATACC
TCCAACTGCTTCTCTTGTCAAGTATGATAATCCAGTTCTTGTCAGTCGAA
ATACAGAGAAGAAATCACCAAGGTCTCGACCATTGAAAGCTTCAACACAA
CCTATTGATGGAAACACAAGTCCTATACCTGCACCACCCAAAGGTGGAAA
ACTTCCATCTGTTTCAAATGAGATTAACAAAAACCAAACAGAAGAAATCT
TGAATTCAATTCTACCTCCAAGGGAATGGACAGAAAATGGTCAGCTATGG
ATTCAACAGGTCTCCAGCACACCAGCCACAAGAATGGATGTCGTCAATCT
TCAGGAACAACTTGATATGCGATTACAACAAAGGCAAGCCAGAGAAACTG
GTATCTGTCCTGTCCGTCGTGAACTTTACTCCCAATGTTTTGATGAACTG
ATCCGACAAGTGACCATCAACTGCGCTGAACGCGGTTTATTGTTGTTGAG
AGTTCGCGATGAAATCCGAATGACCATTGCTGCATACCAAACATTATATG
AAAGCAGTGTCGCATTTGGCATGAGAAAAGCATTACAAGCGGAGCACGGC
AAAACAGATATGGAGAAAAGGATTGTTGAGTTAGATGAAGAAAAATCGGA
GCTCGATAAACAAGTGAATGACTTGAAAGCTAAATGTGATGCTATCGAGA
AACGCGAGACCGAGCGACGTGCCATTGAGGAAAAGAAACACGCTGAGGAA
ATCCAATTCTTGAAGCGAACCAATCAGCAGTTAAAGACGCAATTGGAAGG
TATAATTGCTCCATCGAAGAAGTAAACATTGGTATATCGGATTGTACGAG
TGTCATTGTGCATCAAACTGTTTTGGAAACAGATCCAGTCTTCATGCgcg
aaaataaatatttttctcattgTAAATTGTTCctgataaattatttttct
acaaatttaattttgatgatttttttttcttagtaGTAATAATGACAGTG
AAGTAATAAGCGGAAAAGCTGAATTGTAGTGTTGACATTCGTGAAGAAAA
TGCAACAAAATGGAAGAACATTCGTCAATATTAAAGaagtaattcatgat
atgcaccactgcaatgacttcacgaaattatgcaacttttctgtttttgt
tccacccaatacgtcactttttctattgtttaagtgacgtattgggtgga
aaattttaaaagttctcagaagactttCCAGTGGCATATCATGAACAGGA
CATTCGAAAGAGAGAAACTTATGTTTCTAAATAAGCCTATTCCAGTTCTT
TGAATGCCattgtataagaaatttaatcacTTTTCGATCGATATAGGATT
GCATTAAAACTGCCGTGGCGGCACGTTTGCCAGACCTGTAACCTAGAACG
CCATGGCCTATCCGCCTTTTCAACATATAGAAAACTTGTAAATAACTTTA
TTTCGTTGTAATTATTAATTTAGGGCTTTAAGTAATATATTAAGTATTAT
ACCAAAACCtaggaatttatttttttctaacagAGTGCATTAttctagta
ttttttcagtttgaagtatgttatttttcaagaaatattatttttgagTG
CTAACACTAACATTGTAAATCA

Run BLAST on NCBI

protein sequence of TCONS_00025956-protein

>TCONS_00025956-protein ID=TCONS_00025956-protein|Name=TCONS_00025956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MIPPTASLVKYDNPVLVSRNTEKKSPRSRPLKASTQPIDGNTSPIPAPPK
GGKLPSVSNEINKNQTEEILNSILPPREWTENGQLWIQQVSSTPATRMDV
VNLQEQLDMRLQQRQARETGICPVRRELYSQCFDELIRQVTINCAERGLL
LLRVRDEIRMTIAAYQTLYESSVAFGMRKALQAEHGKTDMEKRIVELDEE
KSELDKQVNDLKAKCDAIEKRETERRAIEEKKHAEEIQFLKRTNQQLKTQ
LEGIIAPSKK

Run BLAST on NCBI

transcript from alignment at sc0000556:88522..97772+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00025956 ID=TCONS_00025956|Name=TCONS_00025956|organism=Clytia hemisphaerica|type=transcript|length=9251bp|location=Sequence derived from alignment at sc0000556:88522..97772+ (Clytia hemisphaerica)
ggcggtcatcgaaaaaatgctctgttcgcgtcgcaacgggtgttaaaaat
gcatgcgggcggacgggcggcggtcaaaaacattcccagtTTTTTTTTGG
CAAGTAGTAGCTCAGGCGTCAGGGGCGATTTTTCGATGGTcatcagagca
attgagaaaaaagctatactttaaaagaacaaatagcttttcccagattt
ctttccgcatctccgcaccggaaaatcagcggaaaatttgatgcgggcag
gtgacgcgaatagaacaatttttcgatgaccgtcTAAGCTAAGCAAGCAG
GGGGCCGTTTTCGGAACTTAagaaattggttgttttttgccCTCAAAACA
CTGAATTATAAGAAGTTTAAAAAGCCCTTACATCTTCTACATTTCCTGTG
GTTCGATCTTTCCAGCAAAAGTGCATAAGAGAATCTTCACTTTGATGAAT
ATAGACTTGTCCTTTTCGCTTGTCAGGGGTGACTGTTGTTCCACGCATGT
TCATTTTCCCAGCTCTGAATTCAACCAGATATTTTGATGATCCAAGGGAA
GCAGAATTTCCAAATAACGCCATGATTGCAAAAGTGATAAATGGCTTTCT
TTCAGTGAAATCTATCCAAGCAAAAAATCAGTTAGTTTCACTCCCGGTCC
TGTTTGCTGTTTCTCATCCGCTAAATGTGGCCTTGACTTTAGTGTCCTGA
ACTCCCGTTGCCCGTAACCGCCGCTAAAACACCGAAAACATAACTTTGAC
GTATGAGAAAGTTTACAGTAATGAGGCAgcatattttatttgaaaggtTT
CGCGCCCCCTCGAAATGTTCGGTGTACTGAAGTTCTTCGTGTGCCCCTCG
CATTGCCCCATTTCCATGACTACGGAATACTCATTCGAGAAAAGCTCAAA
GATTCAGAACGTGGTCGAGCAGTCGAGCTGTAGTCGTTTAGTCGTTGAAC
CTTCATCATTTTCCATCCTAGACAGGGCCAAATCACTTTGAAATGATACC
TCCAACTGCTTCTCTTGTCAAGTATGATAATCCAGTTCTTGTCAGTCGAA
ATACAGAGAAGAAATCACCAAGGGTAAGCAggcatttttgttaaaaattt
tgttttgtttttgagctTGATTTTGTATTCCAGATGTAGTTTAATCAAAC
AACAAAGGTTGATTAAATTCTGACTCAAATTCGattgttgaaatggtcaa
acattcaaaagaccagatagttgctatcataattactgtatcaggccagg
cccaattgatagcttggttcgtgtcctccgaccgactctaaattttttta
aaaaagtgtttcactttgagtcggaaaaatcaaaaaaaattacctcCTTT
TCACATGATAACTACTATCTCTGCGGTTCTTTTTTAACTGACTGCTTTGA
TTCTTCTATAAACAACATCCACTTTGCGCACAGAAAATGTCCCGGTGTAA
CCcgtacttaaaaacaaatattaacCACCTAAAAGCAGAGACTCGCAGCT
GTTTATCTGGTACTcgatttagaaattttcttccgacacgctaaagctct
gaaggtcgggaaaattttaacatctggaaccaTTGGATTACGGAATTTCT
CCTGACCGAGTTCGTAAAATTAAGAAAGAGTCTGGGAACGGTAAAAAGTT
ACTAGTGCCCCGAACTAAGAGTacacatgcaaaaaaaatttcccttgCGA
TTTCTACATAGTGCTCCGaactgaaaaatgtaaacaaagcaggACGCGAA
CTAAAAATTTATTGAGAGTGGCTCtaaggccgatgaaatttatatttgag
tttaccgtcggccgcccacatctctaaaaagcacccgcatgaaaatttca
ttattttcaaaattcataaatttttcattatttccatatttctttacaac
tacaagctctatctttgttaaaatcgtctctacgcatgtttacacgggta
aacaaagaagatttattaCAGAAAATGCTGCCGCCCTCAATCCTAGAACT
GCAGTGGGCGTCCCGCCCATATATCTGCCGCGAACGCCTTAATCTCCAAC
TAGAATTTATCTTGCTATCGCGGCGCGTGCCTCTGTGGATCCAGGCTTTA
GGCTATTTCTTTACATTCGTGTATGGATTCCAGGATTGCATGATTGCtag
aggaatttcaaaaattgaggtttttggtgggaaaatgaaaaaaggttcca
attttagctaccgaccgaccgaccgacccatttttcaaagtttctaggac
acgaaccaaacaatcaattgggcctggcctcatgcatattttaaaaatta
tgcatggctgtatcattgtttttatgctggagtacataattattcaacat
ggctgcctctttaaaaaaaggtctattggagaCAGGGagttattttgtta
aaaaaaaagagtataAAGACATATATAAATTGAGCACTTAGAATGAAGAC
CACAAGGCAAAGAAACAGTCTTGCTTCAGAAATATAATGGTTTATATATA
AAAAGAGGTTCTTTTTTCAGTCCTTTTATTACTGTACAATAGTCTAATTC
TATAATGAGGTAACATAATTCAGGTCAGCAGGTCaggtaaatttttttaa
tgaaagaaaagaaagaaagaactaaaaaaagtttgtttttattctttCGT
TGCCGGCAAACACCGCATAGGCCAGTCTTTTTACCAGAATTTAGCCCGAT
CGGCATGAACGGCTAGTCAAGGACGTGAAAACAGAGGCCGTTTAGAGTCC
CCTGCCTGGTgtctagttggcgaccgaacgtctttgaacccagaaaagtc
ataagtaaaaacaaacctctggagaatttcttttggtagttatctGCTTT
GACCTATTTCCCGTTCCGtactgtttaaaaaaaattctagaaaagaACGA
GTAGAATCggaaagatccaactttgcacggaagcacacgaaaaaaccctt
tttcaaaaaaaataaaaaacggctacctgtggacaaaaaagctttgtaag
aaaaaacgcttcaactgcCACTCCAAAAAATACATCCAGTCTGTGACCAA
CAAGatcaaaagtaagaaaaaaagaCTCTACGatgcgatcaaaacattcc
agaagcggagaaaaaaaagaagactttagCAAAGTTTCTGTCTCCGGTTT
GAAATGACAAAGGAAACCAGTATATTGAATCTCATTGAATCAGATTAGAC
ATAAAAAATTCCTGCATTTTgatcaaatgaagactctccatagaccgcca
ctttcaaaacaaaacaaaaacaaactttagaaaaaaatggcaacttgaac
aaaaattctgaaaaaacatgccgaagggaaatgtaagtgagctatattaa
aacaaaagaactagTGCAAAGAAATTAAATACAAGAAAGCTTtggttttt
ttatcatcctgatcaattcATATGACCTAacctgcaagtagagcactgat
tgCACCAAATCAAACACAaagagcatgttaaaagttgtctaaccgttggt
cgaaaaggattttaaaaaagtaagtaaaaaaattgaatcaaaaaattttg
gtcgccaactgggcaggggactctaacCCTATTCTTTCTAGGGTTGCTGT
TTCTGTTCAGAGGTCAAATTaatggtaatagctcctgaatcAATAGAGCT
TTtatttgccatgaaattttccgtaaattcctaacttttatttagcttca
aaatataaaagattttcacaccttgagcatgatgacatttctgacacttt
tccaatacaaatttattttttatatcaaatatatcgtttaaaccgtaatt
tattgaatatttaggataaaataagcaacTTTTTTCtgaagcctttgtta
gaatacaatagctatttatgagaacaaaggaaattttcagttttttctca
CTTTGGGCGTGATGAGtggcgtcatcaaaaaaaattttgtcaaaagttac
attATGTGACAAGAGTcatgtgtgccaaatttcatccaaaaagacccact
agattaAAAgttaggggtggtacaggaaaagcccccccccctagttttga
accgcctctaaaaaaagcctagtatgaatagggttaaaagcCGTTTCAAA
AGTGAAACAAGAGTAGCTGATCCATAGCAGATAGAAAAAAGAGACAAGGT
CGGTAAAAATGAATTCTTGGCCGCTAAAAAGCCGATATTTTACTGCTCTT
TGGTCGATCAGTCTGGACTGAATTTAAATGAATTTAAAGACAAAGATCAT
GCTCTTATCGACTTCCAGAATGGGTAAGCTGCACGATCTCGCTAACCCAA
CCCATCCGACCTTCCATATTCATCACGCAAACCAATTGATCGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTATTAAATTTcgcaattctttaaaaaaatattt
attagatGTTAGTCTTGCAATATATATTATGCAACATTAGTTTATGACAC
TCGACAAATTCGACATTTTAATAATCACTACTACTACTAGTAAGACATTC
TATACCAATAACAAGTTAATATCTCCACAATTCTCCAATCCAAGCTGTAA
TTTACTTCTagttttgtctattttcttttaagtcTCCAGTCTCCCAAGTT
GTCGAGAAGATAGtaaatagtttatttttctatatttcaaatttaaatta
ttatatttttagtACTTCATGTTTAgccattttcaagcaatcgagTTTTT
TTTACCTTCAATAGCCGATCACGATNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGGTTATTTTCAAGCA
TCAATCCCACATTCAACAACACTACTTTTGCTCTTCTTTTGTTCCGACAA
ATaattattgtttaaaataaatttttattttactgatttttaatttattt
catattttctcaATCTAATTCTGATGAATACTGACTGATACTATACTTAG
TCTCCACCATTTAGAATTTCTCCGAGTTCAAAGCCTTGCCTGTAGAGTTA
TATCTTTCAGAAGTGAATAGGCCTCACTGAAGAGATATATAGCTCTGTAT
TTCAACTTGCCCAGATAGGGCAGTTGTACAATTTTATCCAAGCTTCAATT
TATGATTTTGATCTCAATCGAGTGAATCAACTTTTGGTCGTAcgtttatt
tttgcaaattgaaaattatatataattttttacataataatttatttatt
tatttagtttacttattataaataggacgaatagccattgAGATAATATG
GAAGTGCCTGAAATacaattaataataataataaataaaaaaaatgactg
GTCTTTTAAGGTACTTAAAATCACTTGAGGAGTCACATATTTTCTTCTAT
TTTGAAAGTGttttaagaaattaaaaatccCAATCAGTGATTTAAACCTT
CATATCATTCCAATCTTTAATTTAAAGAAGAGTGATAGAATTGGAAGGTT
TTTGCCAATACTCATAATTCATGAAAGTTcgcaagtttttttttcttttt
ttatattacaTTTACAGTCTCGACCATTGAAAGCTTCAACACAACCTATT
GATGGAAACACAAGTCCTATACCTGCACCACCCAAAGGTGGAAAACTTCC
ATCTGTTTCAAATGAGATTAACAAAAACCAAACAGAAGAAATCTTGAATT
CAATTCTACCTCCAAGGTAACCTTTTTTTCTCTTCACAGACTTTTCTAGT
CTGCATGCAATCTTAACTTGAGATGAGCTTTAAAGTAGACTTAGAATCTG
TTAGAATANTATGCTATCTTAACTTGAGATGAACTTTAAAATAGACTTAA
GAATCTGTTAGAATACAGCAAACAAGGCATATTTTGACTTTCAGACTAAA
TGCGCAGTACAGAAAATGTCTTTTTATTTGTGACAAATTTGTATCAAAGT
AATCCTTGAATCACCGCACTAAACCGTTTCATCTATATAATGCTATTTTT
AATAGGGAATGGACAGAAAATGGTCAGCTATGGATTCAACAGGTCTCCAG
CACACCAGCCACAAGAATGGATGTCGTCAATCTTCAGGTTTGATATACTA
CAATTTTATGTAACTCTGACCTCAGGaattatatttcttatattggCTTA
GCTACCTTACTTGACTGAAAATCGATTAAAGTTTTTGTAGTAAACAttcg
tttgtttgttttggttactGCTCTcgaagatagatagatagaatcgatat
tttacgtggatagcccagtaatctaggacttttaggcagtctttcgattg
ttttcacggggtccgcGGCCAGCCGGCTTAGCTATCTATGAACTCAacag
aacattggaaggagggggattcgaaccgcgaacCCCTGGTTtaagacgct
gacgcctttgaccacttggccatcgctccgtTAGGATAACTGATGTTTAG
ATCAAATATGCCATAATTAACATACAAAACGGATGGATGATATAGAATGT
TCAGTTTGAAAATGTTGCTGTGTAAAATTGCTTTTGATAGTGAAAACAGG
GCATTTCTGGTAACTCTGTTTCATTTCTTATATGTAGGAACAACTTGATA
TGCGATTACAACAAAGGCAAGCCAGAGAAACTGGTATCTGTCCTGTCCGT
CGTGAACTTTACTCCCAATGTTTTGGTATGTATAGCTTGGCTCTTCCTGA
TTGCTTGATATAAAAACTATAACCCTTTATCGCGTGGTATCGAATCCTGA
AACAAGTAAAAGATAAAACCTGATCGATaataatttcaatgattaaATTT
CGAAACATTCATAAAAAATGTgacatgttttattttgattttcggTTACA
CATTTCATAATGGCTTTATAATGTTTCACTAAAGCAGCTTCTAGGCATAC
TCTTTtgtagaaagaaaataaattttgaattcgAAAGGAACTGAAAGCAC
GCTCGTCAATAGCTTGGCTTCTGGCAAGATTTTTTATACATTTATTGTTT
TTTCCATTGCAGATGAACTGATCCGACAAGTGACCATCAACTGCGCTGAA
CGCGGTTTATTGTTGTTGAGAGTTCGCGATGAAATCCGAATGACCATTGC
TGCATACCAAACATTATATGAAAGCAGGTTTGTATGAAGCATAtttgcaa
aaaatacaaatatttttacTCACACTTAGTATAAAGTTCAATTCCTCTTG
TGTTTTACATAGTTACAGAACCTGGATGTCAAAATATTATTCataatatt
gactttaattATTGCTACTTTAGATTATCAAAAAGTATTTCCTTTTTAAC
AGTGTCGCATTTGGCATGAGAAAAGCATTACAAGCGGAGCACGGCAAAAC
AGATATGGAGAAAAGGGTATGCTTTTAGTTTTGTAATCTTATCTTTAGTC
TTCTCCCTTAGTAGCTTCTAAAATgtgggaaaaatttttgttggtcttat
ttttgttgatttttgacaGCCAGGTAAACAATGTTTCATAATTATTGAGC
AGAGTATTACACATTAATTACTTATCAAAAGTTACCTCTGCTTTATAACT
TTTATCATAGATTGTTGAGTTAGATGAAGAAAAATCGGAGCTCGATAAAC
AAGTGAATGACTTGAAAGCTAAATGTGATGCTATCGAGAAACGCGAGACC
GAGCGACGTGCCATTGAGGAAAAGAAACACGCTGAGGAAATCCAATTCTT
GAAGCGAACCAATCAGCAGTTAAAGGTCTGTTCCGTTCATCTGGTAGACA
TTCAAAAAGTCTATTTAATATGCTTTCTTTTTCCCCGACGGAGAGGCTTT
TAAGTTACTTCATtcaaaaaagttcttaaaatcGTTTCGAGAAGTTTCGA
GTAGCACACGCGGGGTCAaaatacattattttcaaatattttatgaaaat
ttcttccaaatGAATGATACTGAGAGGTgtatcatttgaaaaaatacttc
gaaaaatcgaaaaatattgataattcaATCGGACTACTTATCAAACTTTC
ACCGTTTCTTTTTAGACGCAATTGGAAGGTATAATTGCTCCATCGAAGAA
GTAAACATTGGTATATCGGATTGTACGAGTGTCATTGTGCATCAAACTGT
TTTGGAAACAGATCCAGTCTTCATGCgcgaaaataaatatttttctcatt
gTAAATTGTTCctgataaattatttttctacaaatttaattttgatgatt
tttttttcttagtaGTAATAATGACAGTGAAGTAATAAGCGGAAAAGCTG
AATTGTAGTGTTGACATTCGTGAAGAAAATGCAACAAAATGGAAGAACAT
TCGTCAATATTAAAGaagtaattcatgatatgcaccactgcaatgacttc
acgaaattatgcaacttttctgtttttgttccacccaatacgtcactttt
tctattgtttaagtgacgtattgggtggaaaattttaaaagttctcagaa
gactttCCAGTGGCATATCATGAACAGGACATTCGAAAGAGAGAAACTTA
TGTTTCTAAATAAGCCTATTCCAGTTCTTTGAATGCCattgtataagaaa
tttaatcacTTTTCGATCGATATAGGATTGCATTAAAACTGCCGTGGCGG
CACGTTTGCCAGACCTGTAACCTAGAACGCCATGGCCTATCCGCCTTTTC
AACATATAGAAAACTTGTAAATAACTTTATTTCGTTGTAATTATTAATTT
AGGGCTTTAAGTAATATATTAAGTATTATACCAAAACCtaggaatttatt
tttttctaacagAGTGCATTAttctagtattttttcagtttgaagtatgt
tatttttcaagaaatattatttttgagTGCTAACACTAACATTGTAAATC
A

Coding sequence (CDS) from alignment at sc0000556:88522..97772+

>TCONS_00025956 ID=TCONS_00025956|Name=TCONS_00025956|organism=Clytia hemisphaerica|type=CDS|length=6264bp|location=Sequence derived from alignment at sc0000556:88522..97772+ (Clytia hemisphaerica)
ATGATACCTCCAACTGCTTCTCTTGTCAAGTATGATAATCCAGTTCTTGT
CAGTCGAAATACAGAGAAGAAATCACCAAGGTCTCGACCATTGAAAGCTT
CAACACAACCTATTGATGGAAACACAAGTCCTATACCTGCACCACCCAAA
GGTGGAAAACTTCCATCTGTTTCAAATGAGATTAACAAAAACCAAACAGA
AGAAATCTTGAATTCAATTCTACCTCCAAGGGAATGGACAGAAAATGGTC
AGCTATGGATTCAACAGGTCTCCAGCACACCAGCCACAAGAATGGATGTC
GTCAATCTTCAGGAACAACTTGATATGCGATTACAACAAAGGCAAGCCAG
AGAAACTGGTATCTGTCCTGTCCGTCGTGAACTTTACTCCCAATGTTTTG
ATGAACTGATCCGACAAGTGACCATCAACTGCGCTGAACGCGGTTTATTG
TTGTTGAGAGTTCGCGATGAAATCCGAATGACCATTGCTGCATACCAAAC
ATTATATGAAAGCAGTGTCGCATTTGGCATGAGAAAAGCATTACAAGCGG
AGCACGGCAAAACAGATATGGAGAAAAGGATTGTTGAGTTAGATGAAGAA
AAATCGGAGCTCGATAAACAAGTGAATGACTTGAAAGCTAAATGTGATGC
TATCGAGAAACGCGAGACCGAGCGACGTGCCATTGAGGAAAAGAAACACG
CTGAGGAAATCCAATTCTTGAAGCGAACCAATCAGCAGTTAAAGACGCAA
TTGGAAGGTATAATTGCTCCATCGAAGAAGTAAATGATACCTCCAACTGC
TTCTCTTGTCAAGTATGATAATCCAGTTCTTGTCAGTCGAAATACAGAGA
AGAAATCACCAAGGTCTCGACCATTGAAAGCTTCAACACAACCTATTGAT
GGAAACACAAGTCCTATACCTGCACCACCCAAAGGTGGAAAACTTCCATC
TGTTTCAAATGAGATTAACAAAAACCAAACAGAAGAAATCTTGAATTCAA
TTCTACCTCCAAGGGAATGGACAGAAAATGGTCAGCTATGGATTCAACAG
GTCTCCAGCACACCAGCCACAAGAATGGATGTCGTCAATCTTCAGGAACA
ACTTGATATGCGATTACAACAAAGGCAAGCCAGAGAAACTGGTATCTGTC
CTGTCCGTCGTGAACTTTACTCCCAATGTTTTGATGAACTGATCCGACAA
GTGACCATCAACTGCGCTGAACGCGGTTTATTGTTGTTGAGAGTTCGCGA
TGAAATCCGAATGACCATTGCTGCATACCAAACATTATATGAAAGCAGTG
TCGCATTTGGCATGAGAAAAGCATTACAAGCGGAGCACGGCAAAACAGAT
ATGGAGAAAAGGATTGTTGAGTTAGATGAAGAAAAATCGGAGCTCGATAA
ACAAGTGAATGACTTGAAAGCTAAATGTGATGCTATCGAGAAACGCGAGA
CCGAGCGACGTGCCATTGAGGAAAAGAAACACGCTGAGGAAATCCAATTC
TTGAAGCGAACCAATCAGCAGTTAAAGACGCAATTGGAAGGTATAATTGC
TCCATCGAAGAAGTAAATGATACCTCCAACTGCTTCTCTTGTCAAGTATG
ATAATCCAGTTCTTGTCAGTCGAAATACAGAGAAGAAATCACCAAGGTCT
CGACCATTGAAAGCTTCAACACAACCTATTGATGGAAACACAAGTCCTAT
ACCTGCACCACCCAAAGGTGGAAAACTTCCATCTGTTTCAAATGAGATTA
ACAAAAACCAAACAGAAGAAATCTTGAATTCAATTCTACCTCCAAGGGAA
TGGACAGAAAATGGTCAGCTATGGATTCAACAGGTCTCCAGCACACCAGC
CACAAGAATGGATGTCGTCAATCTTCAGGAACAACTTGATATGCGATTAC
AACAAAGGCAAGCCAGAGAAACTGGTATCTGTCCTGTCCGTCGTGAACTT
TACTCCCAATGTTTTGATGAACTGATCCGACAAGTGACCATCAACTGCGC
TGAACGCGGTTTATTGTTGTTGAGAGTTCGCGATGAAATCCGAATGACCA
TTGCTGCATACCAAACATTATATGAAAGCAGTGTCGCATTTGGCATGAGA
AAAGCATTACAAGCGGAGCACGGCAAAACAGATATGGAGAAAAGGATTGT
TGAGTTAGATGAAGAAAAATCGGAGCTCGATAAACAAGTGAATGACTTGA
AAGCTAAATGTGATGCTATCGAGAAACGCGAGACCGAGCGACGTGCCATT
GAGGAAAAGAAACACGCTGAGGAAATCCAATTCTTGAAGCGAACCAATCA
GCAGTTAAAGACGCAATTGGAAGGTATAATTGCTCCATCGAAGAAGTAAA
TGATACCTCCAACTGCTTCTCTTGTCAAGTATGATAATCCAGTTCTTGTC
AGTCGAAATACAGAGAAGAAATCACCAAGGTCTCGACCATTGAAAGCTTC
AACACAACCTATTGATGGAAACACAAGTCCTATACCTGCACCACCCAAAG
GTGGAAAACTTCCATCTGTTTCAAATGAGATTAACAAAAACCAAACAGAA
GAAATCTTGAATTCAATTCTACCTCCAAGGGAATGGACAGAAAATGGTCA
GCTATGGATTCAACAGGTCTCCAGCACACCAGCCACAAGAATGGATGTCG
TCAATCTTCAGGAACAACTTGATATGCGATTACAACAAAGGCAAGCCAGA
GAAACTGGTATCTGTCCTGTCCGTCGTGAACTTTACTCCCAATGTTTTGA
TGAACTGATCCGACAAGTGACCATCAACTGCGCTGAACGCGGTTTATTGT
TGTTGAGAGTTCGCGATGAAATCCGAATGACCATTGCTGCATACCAAACA
TTATATGAAAGCAGTGTCGCATTTGGCATGAGAAAAGCATTACAAGCGGA
GCACGGCAAAACAGATATGGAGAAAAGGATTGTTGAGTTAGATGAAGAAA
AATCGGAGCTCGATAAACAAGTGAATGACTTGAAAGCTAAATGTGATGCT
ATCGAGAAACGCGAGACCGAGCGACGTGCCATTGAGGAAAAGAAACACGC
TGAGGAAATCCAATTCTTGAAGCGAACCAATCAGCAGTTAAAGACGCAAT
TGGAAGGTATAATTGCTCCATCGAAGAAGTAAATGATACCTCCAACTGCT
TCTCTTGTCAAGTATGATAATCCAGTTCTTGTCAGTCGAAATACAGAGAA
GAAATCACCAAGGTCTCGACCATTGAAAGCTTCAACACAACCTATTGATG
GAAACACAAGTCCTATACCTGCACCACCCAAAGGTGGAAAACTTCCATCT
GTTTCAAATGAGATTAACAAAAACCAAACAGAAGAAATCTTGAATTCAAT
TCTACCTCCAAGGGAATGGACAGAAAATGGTCAGCTATGGATTCAACAGG
TCTCCAGCACACCAGCCACAAGAATGGATGTCGTCAATCTTCAGGAACAA
CTTGATATGCGATTACAACAAAGGCAAGCCAGAGAAACTGGTATCTGTCC
TGTCCGTCGTGAACTTTACTCCCAATGTTTTGATGAACTGATCCGACAAG
TGACCATCAACTGCGCTGAACGCGGTTTATTGTTGTTGAGAGTTCGCGAT
GAAATCCGAATGACCATTGCTGCATACCAAACATTATATGAAAGCAGTGT
CGCATTTGGCATGAGAAAAGCATTACAAGCGGAGCACGGCAAAACAGATA
TGGAGAAAAGGATTGTTGAGTTAGATGAAGAAAAATCGGAGCTCGATAAA
CAAGTGAATGACTTGAAAGCTAAATGTGATGCTATCGAGAAACGCGAGAC
CGAGCGACGTGCCATTGAGGAAAAGAAACACGCTGAGGAAATCCAATTCT
TGAAGCGAACCAATCAGCAGTTAAAGACGCAATTGGAAGGTATAATTGCT
CCATCGAAGAAGTAAATGATACCTCCAACTGCTTCTCTTGTCAAGTATGA
TAATCCAGTTCTTGTCAGTCGAAATACAGAGAAGAAATCACCAAGGTCTC
GACCATTGAAAGCTTCAACACAACCTATTGATGGAAACACAAGTCCTATA
CCTGCACCACCCAAAGGTGGAAAACTTCCATCTGTTTCAAATGAGATTAA
CAAAAACCAAACAGAAGAAATCTTGAATTCAATTCTACCTCCAAGGGAAT
GGACAGAAAATGGTCAGCTATGGATTCAACAGGTCTCCAGCACACCAGCC
ACAAGAATGGATGTCGTCAATCTTCAGGAACAACTTGATATGCGATTACA
ACAAAGGCAAGCCAGAGAAACTGGTATCTGTCCTGTCCGTCGTGAACTTT
ACTCCCAATGTTTTGATGAACTGATCCGACAAGTGACCATCAACTGCGCT
GAACGCGGTTTATTGTTGTTGAGAGTTCGCGATGAAATCCGAATGACCAT
TGCTGCATACCAAACATTATATGAAAGCAGTGTCGCATTTGGCATGAGAA
AAGCATTACAAGCGGAGCACGGCAAAACAGATATGGAGAAAAGGATTGTT
GAGTTAGATGAAGAAAAATCGGAGCTCGATAAACAAGTGAATGACTTGAA
AGCTAAATGTGATGCTATCGAGAAACGCGAGACCGAGCGACGTGCCATTG
AGGAAAAGAAACACGCTGAGGAAATCCAATTCTTGAAGCGAACCAATCAG
CAGTTAAAGACGCAATTGGAAGGTATAATTGCTCCATCGAAGAAGTAAAT
GATACCTCCAACTGCTTCTCTTGTCAAGTATGATAATCCAGTTCTTGTCA
GTCGAAATACAGAGAAGAAATCACCAAGGTCTCGACCATTGAAAGCTTCA
ACACAACCTATTGATGGAAACACAAGTCCTATACCTGCACCACCCAAAGG
TGGAAAACTTCCATCTGTTTCAAATGAGATTAACAAAAACCAAACAGAAG
AAATCTTGAATTCAATTCTACCTCCAAGGGAATGGACAGAAAATGGTCAG
CTATGGATTCAACAGGTCTCCAGCACACCAGCCACAAGAATGGATGTCGT
CAATCTTCAGGAACAACTTGATATGCGATTACAACAAAGGCAAGCCAGAG
AAACTGGTATCTGTCCTGTCCGTCGTGAACTTTACTCCCAATGTTTTGAT
GAACTGATCCGACAAGTGACCATCAACTGCGCTGAACGCGGTTTATTGTT
GTTGAGAGTTCGCGATGAAATCCGAATGACCATTGCTGCATACCAAACAT
TATATGAAAGCAGTGTCGCATTTGGCATGAGAAAAGCATTACAAGCGGAG
CACGGCAAAACAGATATGGAGAAAAGGATTGTTGAGTTAGATGAAGAAAA
ATCGGAGCTCGATAAACAAGTGAATGACTTGAAAGCTAAATGTGATGCTA
TCGAGAAACGCGAGACCGAGCGACGTGCCATTGAGGAAAAGAAACACGCT
GAGGAAATCCAATTCTTGAAGCGAACCAATCAGCAGTTAAAGACGCAATT
GGAAGGTATAATTGCTCCATCGAAGAAGTAAATGATACCTCCAACTGCTT
CTCTTGTCAAGTATGATAATCCAGTTCTTGTCAGTCGAAATACAGAGAAG
AAATCACCAAGGTCTCGACCATTGAAAGCTTCAACACAACCTATTGATGG
AAACACAAGTCCTATACCTGCACCACCCAAAGGTGGAAAACTTCCATCTG
TTTCAAATGAGATTAACAAAAACCAAACAGAAGAAATCTTGAATTCAATT
CTACCTCCAAGGGAATGGACAGAAAATGGTCAGCTATGGATTCAACAGGT
CTCCAGCACACCAGCCACAAGAATGGATGTCGTCAATCTTCAGGAACAAC
TTGATATGCGATTACAACAAAGGCAAGCCAGAGAAACTGGTATCTGTCCT
GTCCGTCGTGAACTTTACTCCCAATGTTTTGATGAACTGATCCGACAAGT
GACCATCAACTGCGCTGAACGCGGTTTATTGTTGTTGAGAGTTCGCGATG
AAATCCGAATGACCATTGCTGCATACCAAACATTATATGAAAGCAGTGTC
GCATTTGGCATGAGAAAAGCATTACAAGCGGAGCACGGCAAAACAGATAT
GGAGAAAAGGATTGTTGAGTTAGATGAAGAAAAATCGGAGCTCGATAAAC
AAGTGAATGACTTGAAAGCTAAATGTGATGCTATCGAGAAACGCGAGACC
GAGCGACGTGCCATTGAGGAAAAGAAACACGCTGAGGAAATCCAATTCTT
GAAGCGAACCAATCAGCAGTTAAAGACGCAATTGGAAGGTATAATTGCTC
CATCGAAGAAGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_014602	XLOC_014602	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00025956-protein	TCONS_00025956-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000556	supercontig	sc0000556:88522..97772 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
76.3964	83.9194	106.374	110.457	376.788	287.141	140.515	144.989	101.962	106.551	89.0794	101.725	8.45531	8.12038	7.3558	7.93873	12.1776	14.4814	10.551	10.6742	18.0469	17.2695	25.4415	23.7853	250.433	169.268	37.1089	41.4702	11.5304	11.0678

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR019347	Axonemal_dynein_light_chain

Blast

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BLAST of TCONS_00025956 vs. Swiss-Prot (Human)
Match: IDLC (Axonemal dynein light intermediate polypeptide 1 OS=Homo sapiens GN=DNALI1 PE=1 SV=2)

HSP 1 Score: 393.275 bits (1009), Expect = 6.549e-130
Identity = 199/260 (76.54%), Postives = 223/260 (85.77%), Query Frame = 3

Query:  993 MIPPTASLVKYDNPVLVSRNTEKKSPRSRPLKASTQPIDGNTSPIPAPPKGGKLPSVSNEIN-KNQTEEILNSILPPREWTENGQLWIQQVSSTPATRMDVVNLQEQLDMRLQQRQARETGICPVRRELYSQCFDELIRQVTINCAERGLLLLRVRDEIRMTIAAYQTLYESSVAFGMRKALQAEHGKTDMEKRIVELDEEKSELDKQVNDLKAKCDAIEKRETERRAIEEKKHAEEIQFLKRTNQQLKTQLEGIIAPSK 1769
            MIPP  SL+KYD PVLVSRNTEK+SP++R LK S Q   G +   P PPK  KLPS     +   Q EEILN+ILPPREW E+ QLWIQQVSSTP+TRMDVV+LQEQLD++LQQRQARETGICPVRRELYSQCFDELIR+VTINCAERGLLLLRVRDEIRMTIAAYQTLYESSVAFGMRKALQAE GK+DME++I EL+ EK +L++QVN+ KAKC+A EKRE+ERR +EEKKH EEIQFLKRTNQQLK QLEGIIAP K
Sbjct:    1 MIPPADSLLKYDTPVLVSRNTEKRSPKARLLKVSPQQ-PGPSGSAPQPPKT-KLPSTPCVPDPTKQAEEILNAILPPREWVEDTQLWIQQVSSTPSTRMDVVHLQEQLDLKLQQRQARETGICPVRRELYSQCFDELIREVTINCAERGLLLLRVRDEIRMTIAAYQTLYESSVAFGMRKALQAEQGKSDMERKIAELETEKRDLERQVNEQKAKCEATEKRESERRQVEEKKHNEEIQFLKRTNQQLKAQLEGIIAPKK 258

The following BLAST results are available for this feature:

BLAST of TCONS_00025956 vs. Swiss-Prot (Human)

BLAST of TCONS_00025956 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
IDLC	6.549e-130	76.54	Axonemal dynein light intermediate polypeptide 1 O...	[more]

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TCONS_00025956 (transcript) - C. hemisphaerica