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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025997 ID=TCONS_00025997|Name=TCONS_00025997|organism=Clytia hemisphaerica|type=transcript|length=171bp
ACCGTGCACAAGAAGAAGGTCAACGACCCCAGAGAGAGGACCGTCACAAC
AACAGAAATAGAGGTTCGAATGGTTCAAACAGAAGAGGTCGTGGAGGACC
ACGTAGAGGAAGATAATTTACAGTTTACTTCACTCATTATTTtattacat
gtaaaatacatttGAACAAAG Run BLAST on NCBI transcript from alignment at sc0000559:7153..10598- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025997 ID=TCONS_00025997|Name=TCONS_00025997|organism=Clytia hemisphaerica|type=transcript|length=3446bp|location=Sequence derived from alignment at sc0000559:7153..10598- (Clytia hemisphaerica)
ACCGTGCACAAGAAGAAGGTCAACGACCCCAGAGAGAGGACCGTCACAAC
AACAGAAATAGAGGTGAGAGAAAGTCCAAAAGAGACTCAATCTCCCTATC
TCAAAGGTCCAGTAGCTCCAAGTCTAAACTTAATGGAAAAAAGAAATCTC
TCAAACACAAAATTAATAAGAGGTCTAAAAATGTACACCCTGTTCTCTTA
AATCTGATAAAAACAAGCAAAGAAATAACAAAGCCCCTTCCGGGAAGATT
AAAATATTTTTCGGAAAACTGGGAGAAACTTACAACAGACCAGTGGATAT
TACAAACAATCAGGGGAATGACACTAGACCTAATAAATATTCCAAGGCAA
AAAGCCTCTCCAAAAGACATAAACATGCCAAAAGAACAGAGAGAACTTGT
AGACCTGGAGATAACAGAACTTTTGAGAAAGGGAGCAATTTACCCTGTAA
AAGTAGAGACAGGCCATTTCGTGAGCACAATCTTTCTAAGGGAAAAGAAA
AACGGGAAGCAAAGACCAATAATAAATCTAAAGAATCTAAACTCCTACAT
TTTGTACGAAAAATTCAAAATGGAGGGGTTAAAACAAATGACAGAGATGT
TAAAAAAGGGAGATTTAATGGTGAAGTTGGACATGAAAGATGCCTACTTC
AACCTTCCAATCCGCTCAGATTATCGGAAATTTGTGAGGTTTGCCTGGAA
AGGTTGCCTGTCTCTGCTTCGGACTTGCACCAGGTCCAAGAATATTTACA
AAAAGTTTGAAAGTCCCTGTTCAGTTTCAACGCAGACTGAACATCCGGCT
AGTAATTTACTTAGACGACATACTGGTCATGGGGGAAAACCTAGAAGCCA
TACTCCTGGCCAGGGATACGATCATTTACCTCCTTCAAGACTTGGGGTTT
GTAATAAATCAGGAGAATTCAGTGATGGAACCTAGAGCGGAAATAGAATT
TTTGGGAATGTTAATAAATTTAGAGGAAATGACTATCTCCTTACCAGAGG
AAAAAATAGAGAACATAGTGGGACTCTGCCAAAAAGTTTTGCAGTCAAAG
GAAATAACCCTTAGGGAACTTTCGAAACTGATAGGAAAATTGACTTCCAC
TTATGCGGCAGTCCTCCCTGCCCCATTGAATTGGAAATTCTTGCAAATGA
ACCTAATAAAGGACTTAAAAAATCAACTGAGCTACGAGAAAATAGTCAAG
TTAGATCGACAAGGGAAATTGGAATTAGATTGGTGGATAGAGAACTTAAA
ACTCCAGAACGGGAGAAAAATCAATTTGGGCCCACTGGACCTAATAATTC
AATCGGATGCGGCCAAAACAGGGGGATGGGGAGCCCATTGCCAGGGAAAA
AAGACAGGGGGCCAATGGAACCAATGGGAAAACCAGCAACACATAAACAT
TCAAGAAACGATAGCAGCGGAACTTGCAATAAGGACTTTTACAAAATTGA
AAAAGCCCAAAAGACTGCACCTTCAGATAGACCACACAGTAGCCTTGAGT
TGTATATTGAAGATGGGCAGCACCAAAAACGAGATTCTGACCCAGTATGC
GAAAAGGATTTGGGATTATCTTCTAAAACACCAGATCATGATTACTGTGG
AGTACCTCCCAAGTCGCCTGAACAAAGAGGCGGACAGGGAATCCAGACGG
GGTCTGGATCGCAGTGAGTGGAAACTAGACCCAAAAATTTTCAGGGAAAC
ATGCAAAAAATTTCAATTCCAACCGACAATAGATCTGTTTGCCTCCCGTC
ACTCATTTCAAATGACCCCTTTTGTGTCCTGGAAGCCAGACCCATACGCA
CTAGCAACGGATGCAATGCAAATGTGTTGGACCCAAAGGAAACCTTACGC
ATTCCCTCCATTTTCACTAATTGGAAGGGTATTAGAAAAGGTGGACCGAG
AGGAGGGGAACATGGTACTAATAGCCCCTATTTGGCAAACACAGACATGG
TACCCGAAGCTAGTGGAAATGTGTGTCAGAAGACCCATTCTTCTTCCAAC
GACGGGGGAAATCCTGAGAGACCCAAAGGGAAACAAACATCCATTGGGGG
AGACCTTGAGACTAGGAGCATGGCTAATCTCTGGGGTAAACATCTTAAGA
CAGGAATTTCAGAAGGGGCAACCCAGCTTATTGCAGATGCCCGATCTAGA
GGTACAAAGGCTGCTTACAAATCGTCCTGGAAACGGTGGAGCAGCTGGTG
TGAGCAAAGGAAGGTTGATCCTATTCGATGTGCTATAGAAGAGATCCTAG
AATTTCTCACAAAATGCTTCAACGAAGGTCAACAATACAGAACCATTAAT
AAACATAGATCAGCAATTTCAGCCCTCCATGAAGAAATAGAAGGGGTGGC
AGTAGGGAAAAACCCACTTGTATGCAAACTAATGAAAGGTGTCTCTAACA
ACCGCCCACCCAAACCCAGACTGGTGTTTGTGTGGGATGTGAAACAAGTG
CTAGATTTTATCAAGGGTATGGGCAAGTCCTGTAATCTGAGCAACAAGAA
TCTGTCCCTTAAATGTGTGGCTTTACTGTCAATTTGCCTGNTCTGAGCAA
CAAGGATCTGTCCCTTAAATGTGTGGCTTTACTGTCAATTTGCCTGATAA
ACAGGGGTTCCGAGATAGGGAAACTAATGAAGGAATACATGTTTGAGGCT
CAAGATTGTCTAGTCTTTGGAATTGAAGGACGAGTAAAACATTCACAAAC
AGGGAAAGCTAACTCCAACATCAAAGTTTATAAGTTTTCAGAGGACTCAG
ATCTGTGCCCAGTCGAAACTTTGAAAACGTACTTAGAAAGAACAAAACCC
TGGAGGAAAGAAGAGGGTAGTGGGATTTTCCTAAACTATGTAAAACCCCA
TGACCAGGTTTCGAAGAAGACGATAGCTAGATGGTTACTAACGATGTTAG
AAAAAGCAGGGATCCCAACATCAAAATTCACGGCACATTCTTTTAGGTCG
GCTGGATCGTCTAAAGCAAGAGCCCTAGGGGTGTCATTAAAAGACATTTT
GAAACAAGGCAGTTGGAAAAGTCAAACTGTTTGGGAAAGACATTATAATA
AGGCTATTATAGATCTCTCATCATTCCAATCTTCCATACTAATATCCTCC
AATAACAAGCTTTAAACAGAGGCGAATTTACCGGCAGCCGAACAAGATAT
ACTAAGTTTGGCTGCATCGTAAATTCGTTCGTGTAATTTCCCGAATGAAA
TTACAAAATTACCTTAGGGCATAGCCTGACAGGTAATTAAGATTTCATAA
GGAAATTACACGAACGAATTTACGCCCACCCACCGCAACCCGTGGGATTT
CATATGGAAGACTTATTAAACAAATTTTGTTTCTACAGGTTCGAATGGTT
CAAACAGAAGAGGTCGTGGAGGACCACGTAGAGGAAGATAATTTACAGTT
TACTTCACTCATTATTTTATTACATGTAAAATACATTTGAACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025997-exon-sc0000559-1575043694:10536..10598 | TCONS_00025997-exon-sc0000559-1575043694:10536..10598 | Clytia hemisphaerica | exon |
| TCONS_00025997-exon-sc0000559-1575043694:7153..7260 | TCONS_00025997-exon-sc0000559-1575043694:7153..7260 | Clytia hemisphaerica | exon |
| TCONS_00025997-exon-sc0000559-1510915933:10536..10598 | TCONS_00025997-exon-sc0000559-1510915933:10536..10598 | Clytia hemisphaerica | exon |
| TCONS_00025997-exon-sc0000559-1510915933:7153..7260 | TCONS_00025997-exon-sc0000559-1510915933:7153..7260 | Clytia hemisphaerica | exon |
| TCONS_00025997-exon-sc0000559-1491911889:10536..10598 | TCONS_00025997-exon-sc0000559-1491911889:10536..10598 | Clytia hemisphaerica | exon |
| TCONS_00025997-exon-sc0000559-1491911889:7153..7260 | TCONS_00025997-exon-sc0000559-1491911889:7153..7260 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000559 | supercontig | sc0000559:7153..10598 - |
Blast
The following BLAST results are available for this feature:
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