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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026069 ID=TCONS_00026069|Name=TCONS_00026069|organism=Clytia hemisphaerica|type=transcript|length=2059bp CAACATTCAACTCACTCTGACAAGAACAACGTGCAAACAGCACACAGAGA AGAGAAAGCTCTATCGAGAAGACCCACTCAGCCAATAAAGGCATCGGTAG AAAGAAGCAGGCAAGCCAAAAGTCTTTACAATTCGACGGTGACAAGACGA TGCAAGCCTAGCTGACTACGAAAGGGTCTTCGAATACAATTTCCGTCAAA CATATTGCTACAATTATTGATTTACATTGAGATTTTATATACCTGAAACA TTTTATACAAAATAGTTATGGATTTAATGTGTAACGAAGGATCGGCTAGT TCGAGCGTACAACGAACATACTTGGACAAAAACTTGATAAAAGATGGTAG AGTTTTAGATAGACTGTTAAAAATTGAAGATCATTATATACCTAGATGTG ACTATtttaaaattgtacaaaaagaGATAAAACCTTTTATGAGGAAACTA GTTGTCACATGGATGTTTGAAGTTTGCGAAGAATCGAAATGTGAAGATGA TGTTTTCCCGTTGGCTGTGAACTTATTAGATAGATTTTTATCCATTGTTA GCATACGAAAAACACAACTACAACTACTTGGGACTTCATGTATGTTTATA GCATCAAAATTGAAAGAGACAATACCATTGACTGCAGAAAAATTAGTTAT ATATACAGAcaattcgataaaattggaagaATTATTGgacTGGGAAATCT TAATCTTGAACAAACTGAGATGGGATATCGCGGCTATAGTTCCAAACGAT TTTCTAGAATTCCTCTTCTCTCGTATCACTGTACCAGAATGTCTTGAAAA AGATTACATCCTAAAACACTGTCACACTTATATCGCTCTCTGTTGTATAG ATTTCCTTTTCACCAACTTAAATTCTCCATCAATGATTGCAGCTGCAGCA ATTTGCGCTACATTTCAGAATTTACGATACCAATTTGGTTCATTCTGTCC TTCAAACTATGAACTTATCCAAAGGTTGACCGAAATCACCGGCGTTGATG AGgattgtttgGTTGAATGTCGACAACGAATGGATCAAGTTATAAGAACA CATATGAACAATGATAATAATAGTAATGCGGACACTTCCAAACTAGAACA ACAAAAACATTTGGAGAATACTCCACAGCAACCTGTCACACCAACAGACA TACAAGATGTCGCTTTCTAACATCTTCTCTCTAACTCTCTCAAAAAATAA AtacctttccaaaaaaatattaaaaatcgaaaatcaaattattatgaACA ACCGAGAAATTGTTCAAGGGACACCAATAAAAATCTACCGTTCAACACCA CCTTCCATCGCCGTTTTTGCAATTGTACCGTTTTTCTGCTTCAAATTTTT CGTAACAGATTCGATCCAGAAAGTTCCTAGATGGATAGAAAATGACTGGA AATGCTTTCTTACTATAAAACATCCTTTCTTATattagttttatttattt ttacacaaaaacTGTTCAAGTTATTGTACAAACTTCTATATTTATTAACA AAAATACCTtgtcaccaaaacgaggctaattATTTCGATAccatttactt tttattttaattttttgactgCAAAGTTCCTAAaagattatatttttgtt tgtatgtttgtttgtttgtatcAGTGTGTCAGTGTGTATTGTATTGTTCT TCTAACTTTGTAAGTGTTGTCTTTTGTTcttcaatgttatttttattgtt tttctttttgaagtgAGGGTAAATTTATATGCGTCTGGAACTTTAAACCC CAAAAAACttgtgaatatttttaaattttaaattaacGACAAAATTCCAA CGCATTTTTTTTACTATTGTAACTTTTTTATATCGATACGAGAAGGATTT TATTACTATTAAATTGACTGTTCTGTATCCCCTTCAGAAATTTATTATGG AAATTTTAGGTAGGAAAACGAAATCTTTTTCAAAGTACAATTGTTCATAT TTTATGATAGATTTTTATTAGTTATACTTTTTATTACTGTTCCCTACACa agtttttaaaacaaaaacacaagataaaagcataaaatggcgAAACTCAT gaaaaaact Run BLAST on NCBI transcript from alignment at sc0000562:111790..118808+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026069 ID=TCONS_00026069|Name=TCONS_00026069|organism=Clytia hemisphaerica|type=transcript|length=7019bp|location=Sequence derived from alignment at sc0000562:111790..118808+ (Clytia hemisphaerica) CAACATTCAACTCACTCTGACAAGAACAACGTGCAAACAGCACACAGAGA
AGAGAAAGCTCTATCGAGAAGACCCACTCAGCCAATAAAGGCATCGGTAG
AAAGAAGCAGGCAAGCCAAAAGTCTTTACAATTCGACGGTGACAAGACGA
TGCAAGCCTAGCTGACTACGAAAGGGTCTTCGAATACAATTTCCGTCAAA
CATATTGCTACAATTATTGATTTACATTGAGATTTTATATACCTGAAACA
TTTTATACAAAATAGTTATGGATTTAATGTGTAACGAAGGATCGGCTAGT
TCGAGCGTACAACGAACATACTTGGACAAAAACTTGATAAAAGATGGTAG
AGTTTTAGATAGACTGTTAAAAATTGAAGATCATTATATACCTAGATGTG
ACTATtttaaaattgtacaaaaagaGATAAAACCTTTTATGAGGAAACTA
GTTGTCACATGGATGTTTGAAGTAAGTATTTTTACAGATATATTTTTGAT
CTGTTTGAATATTGTTACGATAAAAGTTTCTGGattctttcgaatgtttt
gttttggattTTGGACGCAAATTTGGTTACCATTTTAAGCAATGCATGTG
CGTGCCTGCGTGCGTCATTtcgattcgaacgttcgaaatgtTTCACCTTG
GGGTTTTCCTGGATGAAATTccttaaaataataatattttggGTTTTTCA
TTTCAGGTTTGCGAAGAATCGAAATGTGAAGATGATGTTTTCCCGTTGGC
TGTGAACTTATTAGATAGATTTTTATCCATTGTTAGCATACGAAAAACAC
AACTACAACTACTTGGGACTTCATGTATGTTTATAGCATCAAAATTGAAA
GAGACAATACCATTGACTGCAGAAAAATTAGTTATATATACAGAcaattc
gataaaattggaagaATTATTGGTGAGTATTtatatatttaatttttttg
aacNGTTGCAAAATATACTTGCAGCACTtttctggtctttaaaatacagT
TATAATCACATTGTTTATGTAAATCCGGgtgtcttttttgagaaaaaaaa
ttaatattttatgattttctttaccaaaataaaaaagtctctcaTATATC
CTAGCTTTTTATCTAAAAGGTCTTTGTATTTGTTTTATACATCAAACATT
ATAAAATAATAAGCGATTCgattaaaaaattgttatatttaAAAAGCGTA
TTACCCCCGGTTTTCAACAAAAGAGCGATTTCATACATAAAGAGCTTTTT
GACATCTCTCTGATTAACAACATTCAACTCACTCTGACAAGAACAACGTG
CAAACAGCACACAGAGAAGAGAAAGCTCTATCGAGAAGACCCACTCAGCC
AATAAAGGCATCGGTAGAAAGAAGCAGGCAAGCCAAAAGTCTTTACAATT
CGACGGTGACAAGACGATGCAAGCCTAGCTGACTACGAAAGGGTCTTCGA
ATACAATTTCCGTCAAACATATTGCTACAATTATTGATTTACATTGAGAT
TTTATATACCTGAAACATTTTATACAAAATAGTTATGGATTTAATGTGTA
ACGAAGGATCGGCTAGTTCGAGCGTACAACGAACATACTTGGACAAAAAC
TTGATAAAAGATGGTAGAGTTTTAGATAGACTGTTAAAAATTGAAGATCA
TTATATACCTAGATGTGACTATtttaaaattgtacaaaaagaGATAAAAC
CTTTTATGAGGAAACTAGTTGTCACATGGATGTTTGAAGTAAGTATTTTT
ACAGATATATTTTTGATCTGTTTGAATATTGTTACGATAAAAGTTTCTGG
attctttcgaatgttttgttttggattTTGGACGCAAATTTGGTTACCAT
TTTAAGCAATGCATGTGCGTGCCTGCGTGCGTCATTtcgattcgaacgtt
cgaaatgtTTCACCTTGGGGTTTTCCTGGATGAAATTccttaaaataata
atattttggGTTTTTCATATCAGGTTTGCGAAGAATCGAAATGTGAAGAT
GATGTTTTCCCGTTGGCTGTGAACTTATTAGATAGATTTTTATCCATTGT
TAGCATACGAAAAACACAACTACAACTACTTGGGACTTCATGTATGTTTA
TAGCATCAAAATTGAAAGAGACAATACCATTGACTGCAGAAAAATTAGTT
ATATATACAGAcaattcgataaaattggaagaATTATTGGTGAGTATTta
tatatttaatttttttgaacattaaaaaaagCATCAACCAATTTTGAAGA
CATTTCTTGAAATATCATGGCAGGCATAGACCCCCCTGTTTATTGTACGT
TGTTGAGGTCTATTTTATCTTTCGAGGTCTAGCANTGCTACAATTATTGA
TTTACATTGAGATTTTATATACCTGAAACATTTTATACAAAATAGTTATG
GATTTAATGTGTAACGAAGGATCGGCTAGTTCGAGCGTACAACGAACATA
CTTGGACAAAAACTTGATAAAAGATGGTAGAGTTTTAGATAGACTGTTAA
AAATTGAAGATCATTATATACCTAGATGTGACTATtttaaaattgtacaa
aaagaGATAAAACCTTTTATGAGGAAACTAGTTGTCACATGGATGTTTGA
AGTAAGTATTTTTACAGATATATTTTTGATCTGTTTGAATATTGTTACGA
TAAAAGTTTCTGGattctttcgaatgttttgttttggattTTGGACGCAA
ATTTGGTTACCATTTTAAGCAATGCATGTGCGTGCCTGCGTGCGTCATTt
cgattcgaacgttcgaaatgtTTCACCTTGGGGTTTTCCTGGATGAAATT
ccttaaaataataatattttggGTTTTTCATATCAGGTTTGCGAAGAATC
GAAATGTGAAGATGATGTTTTCCCGTTGGCTGTGAACTTATTAGATAGAT
TTTTATCCATTGTTAGCATACGAAAAACACAACTACAACTACTTGGGACT
TCATGTATGTTTATAGCATCAAAATTGAAAGAGACAATACCATTGACTGC
AGAAAAATTAGTTATATATACAGAcaattcgataaaattggaagaATTAT
TGGTGAGTATTtatatatttaatttttttgaacattaaaaaaagCATCAA
CCAATTTTGAAGACATTTCTTGAAATATCATGGCAGGCATAGACCCCCCT
GTTTATTGTACGTTGTTGAGGTCTATTTTATCTTTCGAGGTCTAGcagaa
aagttaaaaaactaaaaagttcTCCTAATGAGTGTGTGAAAATTCCGAAA
TCATTATATGCTTCTTTCTGAAGCCATTTCAAGGATTGTTAAATAAATGA
ATGAGTACTCAATCAACTAAATATCGCTTTTTTATTGCCTTCTTTGCAAA
TGTTTCTTTATGCCAACAATAAAATGGTCGGCCCTGTTTTGCCTTATTTT
GGATAAAGCTCTAGAGAACTTTTCCTGCACGTGTTTTTACTTTTCTGAAT
GTAAATTCGAGAAAGAGATTTTAGCTTTTTCGGTGCCTTTTAAATTATGA
CGTAGTAGTTCCCATAGAAACTTTTGTTTCAGCCTAAAGTAACAAAAGCC
AAtgttgtgttttgttttgtcgcATTTATGTTCGAAACGTTTGgttcttt
ttgttattttcctttgtttactttttgattttttaactgTTTGATTACAC
GGGaaaaaagctttttctgcttAGCCATCAGTCACTGAAACTTTGGTGTT
GTATTGCATATTTGACTGAAACTGGCGCCTCTAATACCTTTGGCCTTTAT
TCAATTAATCTATCTCGAAAAAAGCTAAACGATCACTTCAGTCCGGAAAG
TCGTTATAAGTTGATCATCAACATAACTTTTGCTCTGCGTTTTTCGTCAA
TCCATTTTGTTGTGGTATTTTAAGAAAGTGTTCAGAAGCAATGACACTCT
AAAATTTGTCTCTACCATACTTGAAAACAAGTTTGTTATTCTACAGGAAA
CTAAACGTCAAGAAAACATGATTTCATGTAAACAAATTATGACGGACTTT
TCTGAATAATTTCTCatctttgtatttttcaggacTGGGAAATCTTAATC
TTGAACAAACTGAGATGGGATATCGCGGCTATAGTTCCAAACGATTTTCT
AGAATTCCTCTTCTCTCGTATCACTGTACCAGAATGTCTTGAAAAAGATT
ACATCCTAAAACACTGTCACACTTATATCGCTCTCTGTTGTATAGGTATG
TTtacttttttcctctttttagtCTTGTGGCCATATATCTATAATGAgtt
tttaattgatttaaatttataatttatcaagatttgaggaaaattttaat
gatttctttttcctttttcgtCATTTTATGTGAAATTTTAACTGCGTGAC
AAATTTATGAATGCTGACACGaaacaacaaacaaaatatATTGTGCTTGC
ATCTCACTTTCATGGTagatttaaatttcattaattgaATTCGCATTTTT
ACTCTACCTTCAGATTTCCTTTTCACCAACTTAAATTCTCCATCAATGAT
TGCAGCTGCAGCAATTTGCGCTACATTTCAGAATTTACGATACCAATTTG
GTTCATTCTGTCCTTCAAACTATGAACTTATCCAAAGGTTGACCGAAATC
ACCGGCGTTGATGAGGTACGTATTGCACGTAGAAACATATTACTGTGACC
TGTACTGGAATTCGTTAAAATTTTGCAGATACAGGTGATTCGATCGGTTC
AAATGATTttaatcaaattattttcactcttaatctgtctcaattttcaa
tattgctGAAAAATAAATTACTGTTTTAATTGTGTCCAGTCGTTTTTTCT
AAACCTCAATCCTACGCGCCATTTTGACGTCACTAGATTGTGGCTGAACT
GGAAAGGATGTCTATAATTTAACCTGGTTTCTAATGAAGGAAAGTTTATA
AGAAAacgaaaattctcaaatttcctTCAAGATTTTGCCTATTTCAACAT
AAAATTCCAACATCTGAAATTTCCCTTTAGAgtatttcttataaataaaa
tttttaatgacCTTCCTTTCTCTCtaatttttcaggattgtttgGTTGAA
TGTCGACAACGAATGGATCAAGTTATAAGAACACATATGAACAATGATAA
TAATAGTANCTGTTGTATAGGTATGTTtacttttttcctctttttagtCT
TGTGGCCATATATCTATAATGAgtttttaattgatttaaatttataattt
atcaagatttgaggaaaattttaatgatttctttttcctttttcgtCATT
TTATGTGAAATTTTAACTGCGTGACAAATTTATGAATGCTGACACGaaac
aacaaacaaaatatATTGTGCTTGCATCTCACTTTCATGGTagatttaaa
tttcattaattgaATTCGCATTTTTACTCTACCTTCAGATTTCCTTTTCA
CCAACTTAAATTCTCCATCAATGATTGCAGCTGCAGCAATTTGCGCTACA
TTTCAGAATTTACGATACCAATTTGGTTCATTCTGTCCTTCAAACTATGA
ACTTATCCAAAGGTTGACCGAAATCACCGGCGTTGATGAGGTACGTATTG
CACGTAGAAACATATTACTGTCTGACCTGTACTGGAATTCGTTAAAATTT
TGCAGATACAGGTGATTCGATCGGTTCAAATGATTttaatcaaattattt
tcactcttaatctgtctcaattttcaatattgctGAAAAATAAATTACTG
TTTTAATTGTGTCCAGTCGTTTTTTCTAAACCTCAATCCTACGCGCCATT
TTGACGTCACTAGATTGTGGCTGAACTGGAAAGGATGTCTATAATTTAAC
CTGGTTTCTAATGAAGGAAAGTTTATAAGAAAacgaaaattctcaaattt
cctTCAAGATTTTGCCTATTTCAACATAAAACTCCAACATCTGAAATTTC
CCTTTAGAgtatttcttataaataaaatttttaatgacCTTCTTTTCTCT
CtaatttttcaggattgtttgGTTGAATGTCGACAACGAATGGATCAAGT
TATAAGAACACATATGAACAATGATAATAATAGTAATGCGGACACTTCCA
AACTAGAACAACAAAAACATTTGGAGAATACTCCACAGCAACCTGTCACA
CCAACAGACATACAAGATGTCGCTTTCTAACATCTTCTCTCTAACTCTCT
CAAAAAATAAAtacctttccaaaaaaatattaaaaatcgaaaatcaaatt
attatgaACAACCGAGAAATTGTTCAAGGGACACCAATAAAAATCTACCG
TTCAACACCACCTTCCATCGCCGTTTTTGCAATTGTACCGTTTTTCTGCT
TCAAATTTTTCGTAACAGATTCGATCCAGAAAGTTCCTAGATGGATAGAA
AATGACTGGAAATGCTTTCTTACTATAAAACATCCTTTCTTATattagtt
ttatttatttttacacaaaaacTGTTCAAGTTATTGTACAAACTTCTATA
TTTATTAACAAAAATACCTtgtcaccaaaacgaggctaattATTTCGATA
ccatttactttttattttaattttttgactgCAAAGTTCCTAAaagatta
tatttttgtttgtatgtttgtttgtttgtatcAGTGTGTCAGTGTGTATT
GTATTGTTCTTCTAACTTTGTAAGTGTTGTCTTTTGTTcttcaatgttat
ttttattgtttttctttttgaagtgAGGGTAAATTTATATGCGTCTGGAA
CTTTAAACCCCAAAAAACttgtgaatatttttaaattttaaattaacGAC
AAAATTCCAACGCATTTTTTTTACTATTGTAACTTTTTTATATCGATACG
AGAAGGATTTTATTACTATTAAATTGACTGTTCTGTATCCCCTTCAGAAA
TTTATTATGGAAATTTTAGGTAGGAAAACGAAATCTTTTTCAAAGTACAA
TTGTTCATATTTTATGATAGATTTTTATTAGTTATACTTTTTATTACTGT
TCCCTACACaagtttttaaaacaaaaacacaagataaaagcataaaatgg
cgAAACTCATgaaaaaact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00026069-exon-sc0000562-1491911889:111790..112260 | TCONS_00026069-exon-sc0000562-1491911889:111790..112260 | Clytia hemisphaerica | exon |
TCONS_00026069-exon-sc0000562-1510915933:111790..112260 | TCONS_00026069-exon-sc0000562-1510915933:111790..112260 | Clytia hemisphaerica | exon |
TCONS_00026069-exon-sc0000562-1575043694:111790..112260 | TCONS_00026069-exon-sc0000562-1575043694:111790..112260 | Clytia hemisphaerica | exon |
TCONS_00026069-exon-sc0000562-1491911889:114626..114841 | TCONS_00026069-exon-sc0000562-1491911889:114626..114841 | Clytia hemisphaerica | exon |
TCONS_00026069-exon-sc0000562-1510915933:114626..114841 | TCONS_00026069-exon-sc0000562-1510915933:114626..114841 | Clytia hemisphaerica | exon |
TCONS_00026069-exon-sc0000562-1575043694:114626..114841 | TCONS_00026069-exon-sc0000562-1575043694:114626..114841 | Clytia hemisphaerica | exon |
TCONS_00026069-exon-sc0000562-1491911889:115822..115984 | TCONS_00026069-exon-sc0000562-1491911889:115822..115984 | Clytia hemisphaerica | exon |
TCONS_00026069-exon-sc0000562-1510915933:115822..115984 | TCONS_00026069-exon-sc0000562-1510915933:115822..115984 | Clytia hemisphaerica | exon |
TCONS_00026069-exon-sc0000562-1575043694:115822..115984 | TCONS_00026069-exon-sc0000562-1575043694:115822..115984 | Clytia hemisphaerica | exon |
TCONS_00026069-exon-sc0000562-1491911889:116253..116404 | TCONS_00026069-exon-sc0000562-1491911889:116253..116404 | Clytia hemisphaerica | exon |
TCONS_00026069-exon-sc0000562-1510915933:116253..116404 | TCONS_00026069-exon-sc0000562-1510915933:116253..116404 | Clytia hemisphaerica | exon |
TCONS_00026069-exon-sc0000562-1575043694:116253..116404 | TCONS_00026069-exon-sc0000562-1575043694:116253..116404 | Clytia hemisphaerica | exon |
TCONS_00026069-exon-sc0000562-1491911889:117752..118808 | TCONS_00026069-exon-sc0000562-1491911889:117752..118808 | Clytia hemisphaerica | exon |
TCONS_00026069-exon-sc0000562-1510915933:117752..118808 | TCONS_00026069-exon-sc0000562-1510915933:117752..118808 | Clytia hemisphaerica | exon |
TCONS_00026069-exon-sc0000562-1575043694:117752..118808 | TCONS_00026069-exon-sc0000562-1575043694:117752..118808 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000562 | supercontig | sc0000562:111790..118808 + |
Blast
BLAST of TCONS_00026069 vs. Swiss-Prot (Human)
Match: CCND3 (G1/S-specific cyclin-D3 OS=Homo sapiens GN=CCND3 PE=1 SV=2) HSP 1 Score: 250.366 bits (638), Expect = 1.465e-76 Identity = 130/298 (43.62%), Postives = 190/298 (63.76%), Query Frame = 1
Query: 268 MDLMCNEGSASSSVQRTYLDKNLIKDGRVLDRLLKIEDHYIPRCDYFKIVQKEIKPFMRKLVVTWMFEVCEESKCEDDVFPLAVNLLDRFLSIVSIRKTQLQLLGTSCMFIASKLKETIPLTAEKLVIYTDNSXXXXXXXXXXXXXXNKLRWDIAAIVPNDFLEFLFSRITVPECLEKDYILKHCHTYIALCCIDFLFTNLNSPSMIAAAAICATFQNLRYQFGSFCPSNYELIQRLTEITGVDEDCLVECRQRMDQVIRTHMNNDNNSNADTSKLEQQKHLENTPQQPVTPTDIQDV 1161
M+L+C EG+ + R D L+ D RVL LL++E+ Y+PR YF+ VQ+EIKP MRK++ WM EVCEE +CE++VFPLA+N LDR+LS V RK QLQLLG CM +ASKL+ET PLT EKL IYTD+++ +L DWE+L+L KL+WD+AA++ +DFL F+ R+++P + + KH T++ALC D+ F + PSMIA +I A Q L G+ S EL + L ITG + DCL C+++++ +R + + +++ + + P Q TPTD+ +
Sbjct: 1 MELLCCEGTRHAP--RAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPR-DRQALVKKHAQTFLALCATDYTFA-MYPPSMIATGSIGAAVQGL----GACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAI 290
The following BLAST results are available for this feature:
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