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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026072 ID=TCONS_00026072|Name=TCONS_00026072|organism=Clytia hemisphaerica|type=transcript|length=2058bp AACATTCAACTCACTCTGACAAGAACAACGTGCAAACAGCACACAGAGAA GAGAAAGCTCTATCGAGAAGACCCACTCAGCCAATAAAGGCATCGGTAGA AAGAAGCAGGCAAGCCAAAAGTCTTTACAATTCGACGGTGACAAGACGAT GCAAGCCTAGCTGACTACGAAAGGGTCTTCGAATACAATTTCCGTCAAAC ATATTGCTACAATTATTGATTTACATTGAGATTTTATATACCTGAAACAT TTTATACAAAATAGTTATGGATTTAATGTGTAACGAAGGATCGGCTAGTT CGAGCGTACAACGAACATACTTGGACAAAAACTTGATAAAAGATGGTAGA GTTTTAGATAGACTGTTAAAAATTGAAGATCATTATATACCTAGATGTGA CTATtttaaaattgtacaaaaagaGATAAAACCTTTTATGAGGAAACTAG TTGTCACATGGATGTTTGAAGTTTGCGAAGAATCGAAATGTGAAGATGAT GTTTTCCCGTTGGCTGTGAACTTATTAGATAGATTTTTATCCATTGTTAG CATACGAAAAACACAACTACAACTACTTGGGACTTCATGTATGTTTATAG CATCAAAATTGAAAGAGACAATACCATTGACTGCAGAAAAATTAGTTATA TATACAGAcaattcgataaaattggaagaATTATTGgacTGGGAAATCTT AATCTTGAACAAACTGAGATGGGATATCGCGGCTATAGTTCCAAACGATT TTCTAGAATTCCTCTTCTCTCGTATCACTGTACCAGAATGTCTTGAAAAA GATTACATCCTAAAACACTGTCACACTTATATCGCTCTCTGTTGTATAGA TTTCCTTTTCACCAACTTAAATTCTCCATCAATGATTGCAGCTGCAGCAA TTTGCGCTACATTTCAGAATTTACGATACCAATTTGGTTCATTCTGTCCT TCAAACTATGAACTTATCCAAAGGTTGACCGAAATCACCGGCGTTGATGA GgattgtttgGTTGAATGTCGACAACGAATGGATCAAGTTATAAGAACAC ATATGAACAATGATAATAATAGTAATGCGGACACTTCCAAACTAGAACAA CAAAAACATTTGGAGAATACTCCACAGCAACCTGTCACACCAACAGACAT ACAAGATGTCGCTTTCTAACATCTTCTCTCTAACTCTCTCAAAAAATAAA tacctttccaaaaaaatattaaaaatcgaaaatcaaattattatgaACAA CCGAGAAATTGTTCAAGGGACACCAATAAAAATCTACCGTTCAACACCAC CTTCCATCGCCGTTTTTGCAATTGTACCGTTTTTCTGCTTCAAATTTTTC GTAACAGATTCGATCCAGAAAGTTCCTAGATGGATAGAAAATGACTGGAA ATGCTTTCTTACTATAAAACATCCTTTCTTATattagttttatttatttt tacacaaaaacTGTTCAAGTTATTGTACAAACTTCTATATTTATTAACAA AAATACCTtgtcaccaaaacgaggctaattATTTCGATAccatttacttt ttattttaattttttgactgCAAAGTTCCTAAaagattatatttttgttt gtatgtttgtttgtttgtatcAGTGTGTCAGTGTGTATTGTATTGTTCTT CTAACTTTGTAAGTGTTGTCTTTTGTTcttcaatgttatttttattgttt ttctttttgaagtgAGGGTAAATTTATATGCGTCTGGAACTTTAAACCCC AAAAAACttgtgaatatttttaaattttaaattaacGACAAAATTCCAAC GCATTTTTTTTACTATTGTAACTTTTTTATATCGATACGAGAAGGATTTT ATTACTATTAAATTGACTGTTCTGTATCCCCTTCAGAAATTTATTATGGA AATTTTAGGTAGGAAAACGAAATCTTTTTCAAAGTACAATTGTTCATATT TTATGATAGATTTTTATTAGTTATACTTTTTATTACTGTTCCCTACACaa gtttttaaaacaaaaacacaagataaaagcataaaatggcgAAACTCATg aaaaaact Run BLAST on NCBI transcript from alignment at sc0000562:111791..118808+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026072 ID=TCONS_00026072|Name=TCONS_00026072|organism=Clytia hemisphaerica|type=transcript|length=7018bp|location=Sequence derived from alignment at sc0000562:111791..118808+ (Clytia hemisphaerica) AACATTCAACTCACTCTGACAAGAACAACGTGCAAACAGCACACAGAGAA
GAGAAAGCTCTATCGAGAAGACCCACTCAGCCAATAAAGGCATCGGTAGA
AAGAAGCAGGCAAGCCAAAAGTCTTTACAATTCGACGGTGACAAGACGAT
GCAAGCCTAGCTGACTACGAAAGGGTCTTCGAATACAATTTCCGTCAAAC
ATATTGCTACAATTATTGATTTACATTGAGATTTTATATACCTGAAACAT
TTTATACAAAATAGTTATGGATTTAATGTGTAACGAAGGATCGGCTAGTT
CGAGCGTACAACGAACATACTTGGACAAAAACTTGATAAAAGATGGTAGA
GTTTTAGATAGACTGTTAAAAATTGAAGATCATTATATACCTAGATGTGA
CTATtttaaaattgtacaaaaagaGATAAAACCTTTTATGAGGAAACTAG
TTGTCACATGGATGTTTGAAGTAAGTATTTTTACAGATATATTTTTGATC
TGTTTGAATATTGTTACGATAAAAGTTTCTGGattctttcgaatgttttg
ttttggattTTGGACGCAAATTTGGTTACCATTTTAAGCAATGCATGTGC
GTGCCTGCGTGCGTCATTtcgattcgaacgttcgaaatgtTTCACCTTGG
GGTTTTCCTGGATGAAATTccttaaaataataatattttggGTTTTTCAT
TTCAGGTTTGCGAAGAATCGAAATGTGAAGATGATGTTTTCCCGTTGGCT
GTGAACTTATTAGATAGATTTTTATCCATTGTTAGCATACGAAAAACACA
ACTACAACTACTTGGGACTTCATGTATGTTTATAGCATCAAAATTGAAAG
AGACAATACCATTGACTGCAGAAAAATTAGTTATATATACAGAcaattcg
ataaaattggaagaATTATTGGTGAGTATTtatatatttaatttttttga
acNGTTGCAAAATATACTTGCAGCACTtttctggtctttaaaatacagTT
ATAATCACATTGTTTATGTAAATCCGGgtgtcttttttgagaaaaaaaat
taatattttatgattttctttaccaaaataaaaaagtctctcaTATATCC
TAGCTTTTTATCTAAAAGGTCTTTGTATTTGTTTTATACATCAAACATTA
TAAAATAATAAGCGATTCgattaaaaaattgttatatttaAAAAGCGTAT
TACCCCCGGTTTTCAACAAAAGAGCGATTTCATACATAAAGAGCTTTTTG
ACATCTCTCTGATTAACAACATTCAACTCACTCTGACAAGAACAACGTGC
AAACAGCACACAGAGAAGAGAAAGCTCTATCGAGAAGACCCACTCAGCCA
ATAAAGGCATCGGTAGAAAGAAGCAGGCAAGCCAAAAGTCTTTACAATTC
GACGGTGACAAGACGATGCAAGCCTAGCTGACTACGAAAGGGTCTTCGAA
TACAATTTCCGTCAAACATATTGCTACAATTATTGATTTACATTGAGATT
TTATATACCTGAAACATTTTATACAAAATAGTTATGGATTTAATGTGTAA
CGAAGGATCGGCTAGTTCGAGCGTACAACGAACATACTTGGACAAAAACT
TGATAAAAGATGGTAGAGTTTTAGATAGACTGTTAAAAATTGAAGATCAT
TATATACCTAGATGTGACTATtttaaaattgtacaaaaagaGATAAAACC
TTTTATGAGGAAACTAGTTGTCACATGGATGTTTGAAGTAAGTATTTTTA
CAGATATATTTTTGATCTGTTTGAATATTGTTACGATAAAAGTTTCTGGa
ttctttcgaatgttttgttttggattTTGGACGCAAATTTGGTTACCATT
TTAAGCAATGCATGTGCGTGCCTGCGTGCGTCATTtcgattcgaacgttc
gaaatgtTTCACCTTGGGGTTTTCCTGGATGAAATTccttaaaataataa
tattttggGTTTTTCATATCAGGTTTGCGAAGAATCGAAATGTGAAGATG
ATGTTTTCCCGTTGGCTGTGAACTTATTAGATAGATTTTTATCCATTGTT
AGCATACGAAAAACACAACTACAACTACTTGGGACTTCATGTATGTTTAT
AGCATCAAAATTGAAAGAGACAATACCATTGACTGCAGAAAAATTAGTTA
TATATACAGAcaattcgataaaattggaagaATTATTGGTGAGTATTtat
atatttaatttttttgaacattaaaaaaagCATCAACCAATTTTGAAGAC
ATTTCTTGAAATATCATGGCAGGCATAGACCCCCCTGTTTATTGTACGTT
GTTGAGGTCTATTTTATCTTTCGAGGTCTAGCANTGCTACAATTATTGAT
TTACATTGAGATTTTATATACCTGAAACATTTTATACAAAATAGTTATGG
ATTTAATGTGTAACGAAGGATCGGCTAGTTCGAGCGTACAACGAACATAC
TTGGACAAAAACTTGATAAAAGATGGTAGAGTTTTAGATAGACTGTTAAA
AATTGAAGATCATTATATACCTAGATGTGACTATtttaaaattgtacaaa
aagaGATAAAACCTTTTATGAGGAAACTAGTTGTCACATGGATGTTTGAA
GTAAGTATTTTTACAGATATATTTTTGATCTGTTTGAATATTGTTACGAT
AAAAGTTTCTGGattctttcgaatgttttgttttggattTTGGACGCAAA
TTTGGTTACCATTTTAAGCAATGCATGTGCGTGCCTGCGTGCGTCATTtc
gattcgaacgttcgaaatgtTTCACCTTGGGGTTTTCCTGGATGAAATTc
cttaaaataataatattttggGTTTTTCATATCAGGTTTGCGAAGAATCG
AAATGTGAAGATGATGTTTTCCCGTTGGCTGTGAACTTATTAGATAGATT
TTTATCCATTGTTAGCATACGAAAAACACAACTACAACTACTTGGGACTT
CATGTATGTTTATAGCATCAAAATTGAAAGAGACAATACCATTGACTGCA
GAAAAATTAGTTATATATACAGAcaattcgataaaattggaagaATTATT
GGTGAGTATTtatatatttaatttttttgaacattaaaaaaagCATCAAC
CAATTTTGAAGACATTTCTTGAAATATCATGGCAGGCATAGACCCCCCTG
TTTATTGTACGTTGTTGAGGTCTATTTTATCTTTCGAGGTCTAGcagaaa
agttaaaaaactaaaaagttcTCCTAATGAGTGTGTGAAAATTCCGAAAT
CATTATATGCTTCTTTCTGAAGCCATTTCAAGGATTGTTAAATAAATGAA
TGAGTACTCAATCAACTAAATATCGCTTTTTTATTGCCTTCTTTGCAAAT
GTTTCTTTATGCCAACAATAAAATGGTCGGCCCTGTTTTGCCTTATTTTG
GATAAAGCTCTAGAGAACTTTTCCTGCACGTGTTTTTACTTTTCTGAATG
TAAATTCGAGAAAGAGATTTTAGCTTTTTCGGTGCCTTTTAAATTATGAC
GTAGTAGTTCCCATAGAAACTTTTGTTTCAGCCTAAAGTAACAAAAGCCA
AtgttgtgttttgttttgtcgcATTTATGTTCGAAACGTTTGgttctttt
tgttattttcctttgtttactttttgattttttaactgTTTGATTACACG
GGaaaaaagctttttctgcttAGCCATCAGTCACTGAAACTTTGGTGTTG
TATTGCATATTTGACTGAAACTGGCGCCTCTAATACCTTTGGCCTTTATT
CAATTAATCTATCTCGAAAAAAGCTAAACGATCACTTCAGTCCGGAAAGT
CGTTATAAGTTGATCATCAACATAACTTTTGCTCTGCGTTTTTCGTCAAT
CCATTTTGTTGTGGTATTTTAAGAAAGTGTTCAGAAGCAATGACACTCTA
AAATTTGTCTCTACCATACTTGAAAACAAGTTTGTTATTCTACAGGAAAC
TAAACGTCAAGAAAACATGATTTCATGTAAACAAATTATGACGGACTTTT
CTGAATAATTTCTCatctttgtatttttcaggacTGGGAAATCTTAATCT
TGAACAAACTGAGATGGGATATCGCGGCTATAGTTCCAAACGATTTTCTA
GAATTCCTCTTCTCTCGTATCACTGTACCAGAATGTCTTGAAAAAGATTA
CATCCTAAAACACTGTCACACTTATATCGCTCTCTGTTGTATAGGTATGT
TtacttttttcctctttttagtCTTGTGGCCATATATCTATAATGAgttt
ttaattgatttaaatttataatttatcaagatttgaggaaaattttaatg
atttctttttcctttttcgtCATTTTATGTGAAATTTTAACTGCGTGACA
AATTTATGAATGCTGACACGaaacaacaaacaaaatatATTGTGCTTGCA
TCTCACTTTCATGGTagatttaaatttcattaattgaATTCGCATTTTTA
CTCTACCTTCAGATTTCCTTTTCACCAACTTAAATTCTCCATCAATGATT
GCAGCTGCAGCAATTTGCGCTACATTTCAGAATTTACGATACCAATTTGG
TTCATTCTGTCCTTCAAACTATGAACTTATCCAAAGGTTGACCGAAATCA
CCGGCGTTGATGAGGTACGTATTGCACGTAGAAACATATTACTGTGACCT
GTACTGGAATTCGTTAAAATTTTGCAGATACAGGTGATTCGATCGGTTCA
AATGATTttaatcaaattattttcactcttaatctgtctcaattttcaat
attgctGAAAAATAAATTACTGTTTTAATTGTGTCCAGTCGTTTTTTCTA
AACCTCAATCCTACGCGCCATTTTGACGTCACTAGATTGTGGCTGAACTG
GAAAGGATGTCTATAATTTAACCTGGTTTCTAATGAAGGAAAGTTTATAA
GAAAacgaaaattctcaaatttcctTCAAGATTTTGCCTATTTCAACATA
AAATTCCAACATCTGAAATTTCCCTTTAGAgtatttcttataaataaaat
ttttaatgacCTTCCTTTCTCTCtaatttttcaggattgtttgGTTGAAT
GTCGACAACGAATGGATCAAGTTATAAGAACACATATGAACAATGATAAT
AATAGTANCTGTTGTATAGGTATGTTtacttttttcctctttttagtCTT
GTGGCCATATATCTATAATGAgtttttaattgatttaaatttataattta
tcaagatttgaggaaaattttaatgatttctttttcctttttcgtCATTT
TATGTGAAATTTTAACTGCGTGACAAATTTATGAATGCTGACACGaaaca
acaaacaaaatatATTGTGCTTGCATCTCACTTTCATGGTagatttaaat
ttcattaattgaATTCGCATTTTTACTCTACCTTCAGATTTCCTTTTCAC
CAACTTAAATTCTCCATCAATGATTGCAGCTGCAGCAATTTGCGCTACAT
TTCAGAATTTACGATACCAATTTGGTTCATTCTGTCCTTCAAACTATGAA
CTTATCCAAAGGTTGACCGAAATCACCGGCGTTGATGAGGTACGTATTGC
ACGTAGAAACATATTACTGTCTGACCTGTACTGGAATTCGTTAAAATTTT
GCAGATACAGGTGATTCGATCGGTTCAAATGATTttaatcaaattatttt
cactcttaatctgtctcaattttcaatattgctGAAAAATAAATTACTGT
TTTAATTGTGTCCAGTCGTTTTTTCTAAACCTCAATCCTACGCGCCATTT
TGACGTCACTAGATTGTGGCTGAACTGGAAAGGATGTCTATAATTTAACC
TGGTTTCTAATGAAGGAAAGTTTATAAGAAAacgaaaattctcaaatttc
ctTCAAGATTTTGCCTATTTCAACATAAAACTCCAACATCTGAAATTTCC
CTTTAGAgtatttcttataaataaaatttttaatgacCTTCTTTTCTCTC
taatttttcaggattgtttgGTTGAATGTCGACAACGAATGGATCAAGTT
ATAAGAACACATATGAACAATGATAATAATAGTAATGCGGACACTTCCAA
ACTAGAACAACAAAAACATTTGGAGAATACTCCACAGCAACCTGTCACAC
CAACAGACATACAAGATGTCGCTTTCTAACATCTTCTCTCTAACTCTCTC
AAAAAATAAAtacctttccaaaaaaatattaaaaatcgaaaatcaaatta
ttatgaACAACCGAGAAATTGTTCAAGGGACACCAATAAAAATCTACCGT
TCAACACCACCTTCCATCGCCGTTTTTGCAATTGTACCGTTTTTCTGCTT
CAAATTTTTCGTAACAGATTCGATCCAGAAAGTTCCTAGATGGATAGAAA
ATGACTGGAAATGCTTTCTTACTATAAAACATCCTTTCTTATattagttt
tatttatttttacacaaaaacTGTTCAAGTTATTGTACAAACTTCTATAT
TTATTAACAAAAATACCTtgtcaccaaaacgaggctaattATTTCGATAc
catttactttttattttaattttttgactgCAAAGTTCCTAAaagattat
atttttgtttgtatgtttgtttgtttgtatcAGTGTGTCAGTGTGTATTG
TATTGTTCTTCTAACTTTGTAAGTGTTGTCTTTTGTTcttcaatgttatt
tttattgtttttctttttgaagtgAGGGTAAATTTATATGCGTCTGGAAC
TTTAAACCCCAAAAAACttgtgaatatttttaaattttaaattaacGACA
AAATTCCAACGCATTTTTTTTACTATTGTAACTTTTTTATATCGATACGA
GAAGGATTTTATTACTATTAAATTGACTGTTCTGTATCCCCTTCAGAAAT
TTATTATGGAAATTTTAGGTAGGAAAACGAAATCTTTTTCAAAGTACAAT
TGTTCATATTTTATGATAGATTTTTATTAGTTATACTTTTTATTACTGTT
CCCTACACaagtttttaaaacaaaaacacaagataaaagcataaaatggc
gAAACTCATgaaaaaact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00026072-exon-sc0000562-1491911889:111791..112260 | TCONS_00026072-exon-sc0000562-1491911889:111791..112260 | Clytia hemisphaerica | exon |
TCONS_00026072-exon-sc0000562-1510915933:111791..112260 | TCONS_00026072-exon-sc0000562-1510915933:111791..112260 | Clytia hemisphaerica | exon |
TCONS_00026072-exon-sc0000562-1575043694:111791..112260 | TCONS_00026072-exon-sc0000562-1575043694:111791..112260 | Clytia hemisphaerica | exon |
TCONS_00026072-exon-sc0000562-1491911889:112496..112711 | TCONS_00026072-exon-sc0000562-1491911889:112496..112711 | Clytia hemisphaerica | exon |
TCONS_00026072-exon-sc0000562-1510915933:112496..112711 | TCONS_00026072-exon-sc0000562-1510915933:112496..112711 | Clytia hemisphaerica | exon |
TCONS_00026072-exon-sc0000562-1575043694:112496..112711 | TCONS_00026072-exon-sc0000562-1575043694:112496..112711 | Clytia hemisphaerica | exon |
TCONS_00026072-exon-sc0000562-1491911889:115822..115984 | TCONS_00026072-exon-sc0000562-1491911889:115822..115984 | Clytia hemisphaerica | exon |
TCONS_00026072-exon-sc0000562-1510915933:115822..115984 | TCONS_00026072-exon-sc0000562-1510915933:115822..115984 | Clytia hemisphaerica | exon |
TCONS_00026072-exon-sc0000562-1575043694:115822..115984 | TCONS_00026072-exon-sc0000562-1575043694:115822..115984 | Clytia hemisphaerica | exon |
TCONS_00026072-exon-sc0000562-1491911889:116253..116404 | TCONS_00026072-exon-sc0000562-1491911889:116253..116404 | Clytia hemisphaerica | exon |
TCONS_00026072-exon-sc0000562-1510915933:116253..116404 | TCONS_00026072-exon-sc0000562-1510915933:116253..116404 | Clytia hemisphaerica | exon |
TCONS_00026072-exon-sc0000562-1575043694:116253..116404 | TCONS_00026072-exon-sc0000562-1575043694:116253..116404 | Clytia hemisphaerica | exon |
TCONS_00026072-exon-sc0000562-1491911889:117752..118808 | TCONS_00026072-exon-sc0000562-1491911889:117752..118808 | Clytia hemisphaerica | exon |
TCONS_00026072-exon-sc0000562-1510915933:117752..118808 | TCONS_00026072-exon-sc0000562-1510915933:117752..118808 | Clytia hemisphaerica | exon |
TCONS_00026072-exon-sc0000562-1575043694:117752..118808 | TCONS_00026072-exon-sc0000562-1575043694:117752..118808 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000562 | supercontig | sc0000562:111791..118808 + |
Blast
BLAST of TCONS_00026072 vs. Swiss-Prot (Human)
Match: CCND3 (G1/S-specific cyclin-D3 OS=Homo sapiens GN=CCND3 PE=1 SV=2) HSP 1 Score: 250.366 bits (638), Expect = 1.438e-76 Identity = 130/298 (43.62%), Postives = 190/298 (63.76%), Query Frame = 3
Query: 267 MDLMCNEGSASSSVQRTYLDKNLIKDGRVLDRLLKIEDHYIPRCDYFKIVQKEIKPFMRKLVVTWMFEVCEESKCEDDVFPLAVNLLDRFLSIVSIRKTQLQLLGTSCMFIASKLKETIPLTAEKLVIYTDNSXXXXXXXXXXXXXXNKLRWDIAAIVPNDFLEFLFSRITVPECLEKDYILKHCHTYIALCCIDFLFTNLNSPSMIAAAAICATFQNLRYQFGSFCPSNYELIQRLTEITGVDEDCLVECRQRMDQVIRTHMNNDNNSNADTSKLEQQKHLENTPQQPVTPTDIQDV 1160
M+L+C EG+ + R D L+ D RVL LL++E+ Y+PR YF+ VQ+EIKP MRK++ WM EVCEE +CE++VFPLA+N LDR+LS V RK QLQLLG CM +ASKL+ET PLT EKL IYTD+++ +L DWE+L+L KL+WD+AA++ +DFL F+ R+++P + + KH T++ALC D+ F + PSMIA +I A Q L G+ S EL + L ITG + DCL C+++++ +R + + +++ + + P Q TPTD+ +
Sbjct: 1 MELLCCEGTRHAP--RAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPR-DRQALVKKHAQTFLALCATDYTFA-MYPPSMIATGSIGAAVQGL----GACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAI 290
The following BLAST results are available for this feature:
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