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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026079 ID=TCONS_00026079|Name=TCONS_00026079|organism=Clytia hemisphaerica|type=transcript|length=2049bp
CTCACTCTGACAAGAACAACGTGCAAACAGCACACAGAGAAGAGAAAGCT
CTATCGAGAAGACCCACTCAGCCAATAAAGGCATCGGTAGAAAGAAGCAG
GCAAGCCAAAAGTCTTTACAATTCGACGGTGACAAGACGATGCAAGCCTA
GCTGACTACGAAAGGGTCTTCGAATACAATTTCCGTCAAACATATTGCTA
CAATTATTGATTTACATTGAGATTTTATATACCTGAAACATTTTATACAA
AATAGTTATGGATTTAATGTGTAACGAAGGATCGGCTAGTTCGAGCGTAC
AACGAACATACTTGGACAAAAACTTGATAAAAGATGGTAGAGTTTTAGAT
AGACTGTTAAAAATTGAAGATCATTATATACCTAGATGTGACTATtttaa
aattgtacaaaaagaGATAAAACCTTTTATGAGGAAACTAGTTGTCACAT
GGATGTTTGAAGTTTGCGAAGAATCGAAATGTGAAGATGATGTTTTCCCG
TTGGCTGTGAACTTATTAGATAGATTTTTATCCATTGTTAGCATACGAAA
AACACAACTACAACTACTTGGGACTTCATGTATGTTTATAGCATCAAAAT
TGAAAGAGACAATACCATTGACTGCAGAAAAATTAGTTATATATACAGAc
aattcgataaaattggaagaATTATTGgacTGGGAAATCTTAATCTTGAA
CAAACTGAGATGGGATATCGCGGCTATAGTTCCAAACGATTTTCTAGAAT
TCCTCTTCTCTCGTATCACTGTACCAGAATGTCTTGAAAAAGATTACATC
CTAAAACACTGTCACACTTATATCGCTCTCTGTTGTATAGATTTCCTTTT
CACCAACTTAAATTCTCCATCAATGATTGCAGCTGCAGCAATTTGCGCTA
CATTTCAGAATTTACGATACCAATTTGGTTCATTCTGTCCTTCAAACTAT
GAACTTATCCAAAGGTTGACCGAAATCACCGGCGTTGATGAGgattgttt
gGTTGAATGTCGACAACGAATGGATCAAGTTATAAGAACACATATGAACA
ATGATAATAATAGTAATGCGGACACTTCCAAACTAGAACAACAAAAACAT
TTGGAGAATACTCCACAGCAACCTGTCACACCAACAGACATACAAGATGT
CGCTTTCTAACATCTTCTCTCTAACTCTCTCAAAAAATAAAtacctttcc
aaaaaaatattaaaaatcgaaaatcaaattattatgaACAACCGAGAAAT
TGTTCAAGGGACACCAATAAAAATCTACCGTTCAACACCACCTTCCATCG
CCGTTTTTGCAATTGTACCGTTTTTCTGCTTCAAATTTTTCGTAACAGAT
TCGATCCAGAAAGTTCCTAGATGGATAGAAAATGACTGGAAATGCTTTCT
TACTATAAAACATCCTTTCTTATattagttttatttatttttacacaaaa
acTGTTCAAGTTATTGTACAAACTTCTATATTTATTAACAAAAATACCTt
gtcaccaaaacgaggctaattATTTCGATAccatttactttttattttaa
ttttttgactgCAAAGTTCCTAAaagattatatttttgtttgtatgtttg
tttgtttgtatcAGTGTGTCAGTGTGTATTGTATTGTTCTTCTAACTTTG
TAAGTGTTGTCTTTTGTTcttcaatgttatttttattgtttttctttttg
aagtgAGGGTAAATTTATATGCGTCTGGAACTTTAAACCCCAAAAAACtt
gtgaatatttttaaattttaaattaacGACAAAATTCCAACGCATTTTTT
TTACTATTGTAACTTTTTTATATCGATACGAGAAGGATTTTATTACTATT
AAATTGACTGTTCTGTATCCCCTTCAGAAATTTATTATGGAAATTTTAGG
TAGGAAAACGAAATCTTTTTCAAAGTACAATTGTTCATATTTTATGATAG
ATTTTTATTAGTTATACTTTTTATTACTGTTCCCTACACaagtttttaaa
acaaaaacacaagataaaagcataaaatggcgAAACTCATgaaaaaact Run BLAST on NCBI transcript from alignment at sc0000562:111800..118808+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026079 ID=TCONS_00026079|Name=TCONS_00026079|organism=Clytia hemisphaerica|type=transcript|length=7009bp|location=Sequence derived from alignment at sc0000562:111800..118808+ (Clytia hemisphaerica)
CTCACTCTGACAAGAACAACGTGCAAACAGCACACAGAGAAGAGAAAGCT
CTATCGAGAAGACCCACTCAGCCAATAAAGGCATCGGTAGAAAGAAGCAG
GCAAGCCAAAAGTCTTTACAATTCGACGGTGACAAGACGATGCAAGCCTA
GCTGACTACGAAAGGGTCTTCGAATACAATTTCCGTCAAACATATTGCTA
CAATTATTGATTTACATTGAGATTTTATATACCTGAAACATTTTATACAA
AATAGTTATGGATTTAATGTGTAACGAAGGATCGGCTAGTTCGAGCGTAC
AACGAACATACTTGGACAAAAACTTGATAAAAGATGGTAGAGTTTTAGAT
AGACTGTTAAAAATTGAAGATCATTATATACCTAGATGTGACTATtttaa
aattgtacaaaaagaGATAAAACCTTTTATGAGGAAACTAGTTGTCACAT
GGATGTTTGAAGTAAGTATTTTTACAGATATATTTTTGATCTGTTTGAAT
ATTGTTACGATAAAAGTTTCTGGattctttcgaatgttttgttttggatt
TTGGACGCAAATTTGGTTACCATTTTAAGCAATGCATGTGCGTGCCTGCG
TGCGTCATTtcgattcgaacgttcgaaatgtTTCACCTTGGGGTTTTCCT
GGATGAAATTccttaaaataataatattttggGTTTTTCATTTCAGGTTT
GCGAAGAATCGAAATGTGAAGATGATGTTTTCCCGTTGGCTGTGAACTTA
TTAGATAGATTTTTATCCATTGTTAGCATACGAAAAACACAACTACAACT
ACTTGGGACTTCATGTATGTTTATAGCATCAAAATTGAAAGAGACAATAC
CATTGACTGCAGAAAAATTAGTTATATATACAGAcaattcgataaaattg
gaagaATTATTGGTGAGTATTtatatatttaatttttttgaacNGTTGCA
AAATATACTTGCAGCACTtttctggtctttaaaatacagTTATAATCACA
TTGTTTATGTAAATCCGGgtgtcttttttgagaaaaaaaattaatatttt
atgattttctttaccaaaataaaaaagtctctcaTATATCCTAGCTTTTT
ATCTAAAAGGTCTTTGTATTTGTTTTATACATCAAACATTATAAAATAAT
AAGCGATTCgattaaaaaattgttatatttaAAAAGCGTATTACCCCCGG
TTTTCAACAAAAGAGCGATTTCATACATAAAGAGCTTTTTGACATCTCTC
TGATTAACAACATTCAACTCACTCTGACAAGAACAACGTGCAAACAGCAC
ACAGAGAAGAGAAAGCTCTATCGAGAAGACCCACTCAGCCAATAAAGGCA
TCGGTAGAAAGAAGCAGGCAAGCCAAAAGTCTTTACAATTCGACGGTGAC
AAGACGATGCAAGCCTAGCTGACTACGAAAGGGTCTTCGAATACAATTTC
CGTCAAACATATTGCTACAATTATTGATTTACATTGAGATTTTATATACC
TGAAACATTTTATACAAAATAGTTATGGATTTAATGTGTAACGAAGGATC
GGCTAGTTCGAGCGTACAACGAACATACTTGGACAAAAACTTGATAAAAG
ATGGTAGAGTTTTAGATAGACTGTTAAAAATTGAAGATCATTATATACCT
AGATGTGACTATtttaaaattgtacaaaaagaGATAAAACCTTTTATGAG
GAAACTAGTTGTCACATGGATGTTTGAAGTAAGTATTTTTACAGATATAT
TTTTGATCTGTTTGAATATTGTTACGATAAAAGTTTCTGGattctttcga
atgttttgttttggattTTGGACGCAAATTTGGTTACCATTTTAAGCAAT
GCATGTGCGTGCCTGCGTGCGTCATTtcgattcgaacgttcgaaatgtTT
CACCTTGGGGTTTTCCTGGATGAAATTccttaaaataataatattttggG
TTTTTCATATCAGGTTTGCGAAGAATCGAAATGTGAAGATGATGTTTTCC
CGTTGGCTGTGAACTTATTAGATAGATTTTTATCCATTGTTAGCATACGA
AAAACACAACTACAACTACTTGGGACTTCATGTATGTTTATAGCATCAAA
ATTGAAAGAGACAATACCATTGACTGCAGAAAAATTAGTTATATATACAG
AcaattcgataaaattggaagaATTATTGGTGAGTATTtatatatttaat
ttttttgaacattaaaaaaagCATCAACCAATTTTGAAGACATTTCTTGA
AATATCATGGCAGGCATAGACCCCCCTGTTTATTGTACGTTGTTGAGGTC
TATTTTATCTTTCGAGGTCTAGCANTGCTACAATTATTGATTTACATTGA
GATTTTATATACCTGAAACATTTTATACAAAATAGTTATGGATTTAATGT
GTAACGAAGGATCGGCTAGTTCGAGCGTACAACGAACATACTTGGACAAA
AACTTGATAAAAGATGGTAGAGTTTTAGATAGACTGTTAAAAATTGAAGA
TCATTATATACCTAGATGTGACTATtttaaaattgtacaaaaagaGATAA
AACCTTTTATGAGGAAACTAGTTGTCACATGGATGTTTGAAGTAAGTATT
TTTACAGATATATTTTTGATCTGTTTGAATATTGTTACGATAAAAGTTTC
TGGattctttcgaatgttttgttttggattTTGGACGCAAATTTGGTTAC
CATTTTAAGCAATGCATGTGCGTGCCTGCGTGCGTCATTtcgattcgaac
gttcgaaatgtTTCACCTTGGGGTTTTCCTGGATGAAATTccttaaaata
ataatattttggGTTTTTCATATCAGGTTTGCGAAGAATCGAAATGTGAA
GATGATGTTTTCCCGTTGGCTGTGAACTTATTAGATAGATTTTTATCCAT
TGTTAGCATACGAAAAACACAACTACAACTACTTGGGACTTCATGTATGT
TTATAGCATCAAAATTGAAAGAGACAATACCATTGACTGCAGAAAAATTA
GTTATATATACAGAcaattcgataaaattggaagaATTATTGGTGAGTAT
TtatatatttaatttttttgaacattaaaaaaagCATCAACCAATTTTGA
AGACATTTCTTGAAATATCATGGCAGGCATAGACCCCCCTGTTTATTGTA
CGTTGTTGAGGTCTATTTTATCTTTCGAGGTCTAGcagaaaagttaaaaa
actaaaaagttcTCCTAATGAGTGTGTGAAAATTCCGAAATCATTATATG
CTTCTTTCTGAAGCCATTTCAAGGATTGTTAAATAAATGAATGAGTACTC
AATCAACTAAATATCGCTTTTTTATTGCCTTCTTTGCAAATGTTTCTTTA
TGCCAACAATAAAATGGTCGGCCCTGTTTTGCCTTATTTTGGATAAAGCT
CTAGAGAACTTTTCCTGCACGTGTTTTTACTTTTCTGAATGTAAATTCGA
GAAAGAGATTTTAGCTTTTTCGGTGCCTTTTAAATTATGACGTAGTAGTT
CCCATAGAAACTTTTGTTTCAGCCTAAAGTAACAAAAGCCAAtgttgtgt
tttgttttgtcgcATTTATGTTCGAAACGTTTGgttctttttgttatttt
cctttgtttactttttgattttttaactgTTTGATTACACGGGaaaaaag
ctttttctgcttAGCCATCAGTCACTGAAACTTTGGTGTTGTATTGCATA
TTTGACTGAAACTGGCGCCTCTAATACCTTTGGCCTTTATTCAATTAATC
TATCTCGAAAAAAGCTAAACGATCACTTCAGTCCGGAAAGTCGTTATAAG
TTGATCATCAACATAACTTTTGCTCTGCGTTTTTCGTCAATCCATTTTGT
TGTGGTATTTTAAGAAAGTGTTCAGAAGCAATGACACTCTAAAATTTGTC
TCTACCATACTTGAAAACAAGTTTGTTATTCTACAGGAAACTAAACGTCA
AGAAAACATGATTTCATGTAAACAAATTATGACGGACTTTTCTGAATAAT
TTCTCatctttgtatttttcaggacTGGGAAATCTTAATCTTGAACAAAC
TGAGATGGGATATCGCGGCTATAGTTCCAAACGATTTTCTAGAATTCCTC
TTCTCTCGTATCACTGTACCAGAATGTCTTGAAAAAGATTACATCCTAAA
ACACTGTCACACTTATATCGCTCTCTGTTGTATAGGTATGTTtacttttt
tcctctttttagtCTTGTGGCCATATATCTATAATGAgtttttaattgat
ttaaatttataatttatcaagatttgaggaaaattttaatgatttctttt
tcctttttcgtCATTTTATGTGAAATTTTAACTGCGTGACAAATTTATGA
ATGCTGACACGaaacaacaaacaaaatatATTGTGCTTGCATCTCACTTT
CATGGTagatttaaatttcattaattgaATTCGCATTTTTACTCTACCTT
CAGATTTCCTTTTCACCAACTTAAATTCTCCATCAATGATTGCAGCTGCA
GCAATTTGCGCTACATTTCAGAATTTACGATACCAATTTGGTTCATTCTG
TCCTTCAAACTATGAACTTATCCAAAGGTTGACCGAAATCACCGGCGTTG
ATGAGGTACGTATTGCACGTAGAAACATATTACTGTGACCTGTACTGGAA
TTCGTTAAAATTTTGCAGATACAGGTGATTCGATCGGTTCAAATGATTtt
aatcaaattattttcactcttaatctgtctcaattttcaatattgctGAA
AAATAAATTACTGTTTTAATTGTGTCCAGTCGTTTTTTCTAAACCTCAAT
CCTACGCGCCATTTTGACGTCACTAGATTGTGGCTGAACTGGAAAGGATG
TCTATAATTTAACCTGGTTTCTAATGAAGGAAAGTTTATAAGAAAacgaa
aattctcaaatttcctTCAAGATTTTGCCTATTTCAACATAAAATTCCAA
CATCTGAAATTTCCCTTTAGAgtatttcttataaataaaatttttaatga
cCTTCCTTTCTCTCtaatttttcaggattgtttgGTTGAATGTCGACAAC
GAATGGATCAAGTTATAAGAACACATATGAACAATGATAATAATAGTANC
TGTTGTATAGGTATGTTtacttttttcctctttttagtCTTGTGGCCATA
TATCTATAATGAgtttttaattgatttaaatttataatttatcaagattt
gaggaaaattttaatgatttctttttcctttttcgtCATTTTATGTGAAA
TTTTAACTGCGTGACAAATTTATGAATGCTGACACGaaacaacaaacaaa
atatATTGTGCTTGCATCTCACTTTCATGGTagatttaaatttcattaat
tgaATTCGCATTTTTACTCTACCTTCAGATTTCCTTTTCACCAACTTAAA
TTCTCCATCAATGATTGCAGCTGCAGCAATTTGCGCTACATTTCAGAATT
TACGATACCAATTTGGTTCATTCTGTCCTTCAAACTATGAACTTATCCAA
AGGTTGACCGAAATCACCGGCGTTGATGAGGTACGTATTGCACGTAGAAA
CATATTACTGTCTGACCTGTACTGGAATTCGTTAAAATTTTGCAGATACA
GGTGATTCGATCGGTTCAAATGATTttaatcaaattattttcactcttaa
tctgtctcaattttcaatattgctGAAAAATAAATTACTGTTTTAATTGT
GTCCAGTCGTTTTTTCTAAACCTCAATCCTACGCGCCATTTTGACGTCAC
TAGATTGTGGCTGAACTGGAAAGGATGTCTATAATTTAACCTGGTTTCTA
ATGAAGGAAAGTTTATAAGAAAacgaaaattctcaaatttcctTCAAGAT
TTTGCCTATTTCAACATAAAACTCCAACATCTGAAATTTCCCTTTAGAgt
atttcttataaataaaatttttaatgacCTTCTTTTCTCTCtaatttttc
aggattgtttgGTTGAATGTCGACAACGAATGGATCAAGTTATAAGAACA
CATATGAACAATGATAATAATAGTAATGCGGACACTTCCAAACTAGAACA
ACAAAAACATTTGGAGAATACTCCACAGCAACCTGTCACACCAACAGACA
TACAAGATGTCGCTTTCTAACATCTTCTCTCTAACTCTCTCAAAAAATAA
AtacctttccaaaaaaatattaaaaatcgaaaatcaaattattatgaACA
ACCGAGAAATTGTTCAAGGGACACCAATAAAAATCTACCGTTCAACACCA
CCTTCCATCGCCGTTTTTGCAATTGTACCGTTTTTCTGCTTCAAATTTTT
CGTAACAGATTCGATCCAGAAAGTTCCTAGATGGATAGAAAATGACTGGA
AATGCTTTCTTACTATAAAACATCCTTTCTTATattagttttatttattt
ttacacaaaaacTGTTCAAGTTATTGTACAAACTTCTATATTTATTAACA
AAAATACCTtgtcaccaaaacgaggctaattATTTCGATAccatttactt
tttattttaattttttgactgCAAAGTTCCTAAaagattatatttttgtt
tgtatgtttgtttgtttgtatcAGTGTGTCAGTGTGTATTGTATTGTTCT
TCTAACTTTGTAAGTGTTGTCTTTTGTTcttcaatgttatttttattgtt
tttctttttgaagtgAGGGTAAATTTATATGCGTCTGGAACTTTAAACCC
CAAAAAACttgtgaatatttttaaattttaaattaacGACAAAATTCCAA
CGCATTTTTTTTACTATTGTAACTTTTTTATATCGATACGAGAAGGATTT
TATTACTATTAAATTGACTGTTCTGTATCCCCTTCAGAAATTTATTATGG
AAATTTTAGGTAGGAAAACGAAATCTTTTTCAAAGTACAATTGTTCATAT
TTTATGATAGATTTTTATTAGTTATACTTTTTATTACTGTTCCCTACACa
agtttttaaaacaaaaacacaagataaaagcataaaatggcgAAACTCAT
gaaaaaact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026079-exon-sc0000562-1491911889:111800..112260 | TCONS_00026079-exon-sc0000562-1491911889:111800..112260 | Clytia hemisphaerica | exon |
| TCONS_00026079-exon-sc0000562-1510915933:111800..112260 | TCONS_00026079-exon-sc0000562-1510915933:111800..112260 | Clytia hemisphaerica | exon |
| TCONS_00026079-exon-sc0000562-1575043694:111800..112260 | TCONS_00026079-exon-sc0000562-1575043694:111800..112260 | Clytia hemisphaerica | exon |
| TCONS_00026079-exon-sc0000562-1491911889:114626..114841 | TCONS_00026079-exon-sc0000562-1491911889:114626..114841 | Clytia hemisphaerica | exon |
| TCONS_00026079-exon-sc0000562-1510915933:114626..114841 | TCONS_00026079-exon-sc0000562-1510915933:114626..114841 | Clytia hemisphaerica | exon |
| TCONS_00026079-exon-sc0000562-1575043694:114626..114841 | TCONS_00026079-exon-sc0000562-1575043694:114626..114841 | Clytia hemisphaerica | exon |
| TCONS_00026079-exon-sc0000562-1491911889:115822..115984 | TCONS_00026079-exon-sc0000562-1491911889:115822..115984 | Clytia hemisphaerica | exon |
| TCONS_00026079-exon-sc0000562-1510915933:115822..115984 | TCONS_00026079-exon-sc0000562-1510915933:115822..115984 | Clytia hemisphaerica | exon |
| TCONS_00026079-exon-sc0000562-1575043694:115822..115984 | TCONS_00026079-exon-sc0000562-1575043694:115822..115984 | Clytia hemisphaerica | exon |
| TCONS_00026079-exon-sc0000562-1491911889:117178..117329 | TCONS_00026079-exon-sc0000562-1491911889:117178..117329 | Clytia hemisphaerica | exon |
| TCONS_00026079-exon-sc0000562-1510915933:117178..117329 | TCONS_00026079-exon-sc0000562-1510915933:117178..117329 | Clytia hemisphaerica | exon |
| TCONS_00026079-exon-sc0000562-1575043694:117178..117329 | TCONS_00026079-exon-sc0000562-1575043694:117178..117329 | Clytia hemisphaerica | exon |
| TCONS_00026079-exon-sc0000562-1491911889:117752..118808 | TCONS_00026079-exon-sc0000562-1491911889:117752..118808 | Clytia hemisphaerica | exon |
| TCONS_00026079-exon-sc0000562-1510915933:117752..118808 | TCONS_00026079-exon-sc0000562-1510915933:117752..118808 | Clytia hemisphaerica | exon |
| TCONS_00026079-exon-sc0000562-1575043694:117752..118808 | TCONS_00026079-exon-sc0000562-1575043694:117752..118808 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000562 | supercontig | sc0000562:111800..118808 + |
Blast
BLAST of TCONS_00026079 vs. Swiss-Prot (Human)
Match: CCND3 (G1/S-specific cyclin-D3 OS=Homo sapiens GN=CCND3 PE=1 SV=2) HSP 1 Score: 250.366 bits (638), Expect = 1.358e-76 Identity = 130/298 (43.62%), Postives = 190/298 (63.76%), Query Frame = 3
Query: 258 MDLMCNEGSASSSVQRTYLDKNLIKDGRVLDRLLKIEDHYIPRCDYFKIVQKEIKPFMRKLVVTWMFEVCEESKCEDDVFPLAVNLLDRFLSIVSIRKTQLQLLGTSCMFIASKLKETIPLTAEKLVIYTDNSXXXXXXXXXXXXXXNKLRWDIAAIVPNDFLEFLFSRITVPECLEKDYILKHCHTYIALCCIDFLFTNLNSPSMIAAAAICATFQNLRYQFGSFCPSNYELIQRLTEITGVDEDCLVECRQRMDQVIRTHMNNDNNSNADTSKLEQQKHLENTPQQPVTPTDIQDV 1151
M+L+C EG+ + R D L+ D RVL LL++E+ Y+PR YF+ VQ+EIKP MRK++ WM EVCEE +CE++VFPLA+N LDR+LS V RK QLQLLG CM +ASKL+ET PLT EKL IYTD+++ +L DWE+L+L KL+WD+AA++ +DFL F+ R+++P + + KH T++ALC D+ F + PSMIA +I A Q L G+ S EL + L ITG + DCL C+++++ +R + + +++ + + P Q TPTD+ +
Sbjct: 1 MELLCCEGTRHAP--RAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPR-DRQALVKKHAQTFLALCATDYTFA-MYPPSMIATGSIGAAVQGL----GACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAI 290
The following BLAST results are available for this feature:
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