TCONS_00026085 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026085
Unique NameTCONS_00026085
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2049

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026085 ID=TCONS_00026085|Name=TCONS_00026085|organism=Clytia hemisphaerica|type=transcript|length=2049bp
CTCACTCTGACAAGAACAACGTGCAAACAGCACACAGAGAAGAGAAAGCT
CTATCGAGAAGACCCACTCAGCCAATAAAGGCATCGGTAGAAAGAAGCAG
GCAAGCCAAAAGTCTTTACAATTCGACGGTGACAAGACGATGCAAGCCTA
GCTGACTACGAAAGGGTCTTCGAATACAATTTCCGTCAAACATATTGCTA
CAATTATTGATTTACATTGAGATTTTATATACCTGAAACATTTTATACAA
AATAGTTATGGATTTAATGTGTAACGAAGGATCGGCTAGTTCGAGCGTAC
AACGAACATACTTGGACAAAAACTTGATAAAAGATGGTAGAGTTTTAGAT
AGACTGTTAAAAATTGAAGATCATTATATACCTAGATGTGACTATtttaa
aattgtacaaaaagaGATAAAACCTTTTATGAGGAAACTAGTTGTCACAT
GGATGTTTGAAGTTTGCGAAGAATCGAAATGTGAAGATGATGTTTTCCCG
TTGGCTGTGAACTTATTAGATAGATTTTTATCCATTGTTAGCATACGAAA
AACACAACTACAACTACTTGGGACTTCATGTATGTTTATAGCATCAAAAT
TGAAAGAGACAATACCATTGACTGCAGAAAAATTAGTTATATATACAGAc
aattcgataaaattggaagaATTATTGgacTGGGAAATCTTAATCTTGAA
CAAACTGAGATGGGATATCGCGGCTATAGTTCCAAACGATTTTCTAGAAT
TCCTCTTCTCTCGTATCACTGTACCAGAATGTCTTGAAAAAGATTACATC
CTAAAACACTGTCACACTTATATCGCTCTCTGTTGTATAGATTTCCTTTT
CACCAACTTAAATTCTCCATCAATGATTGCAGCTGCAGCAATTTGCGCTA
CATTTCAGAATTTACGATACCAATTTGGTTCATTCTGTCCTTCAAACTAT
GAACTTATCCAAAGGTTGACCGAAATCACCGGCGTTGATGAGgattgttt
gGTTGAATGTCGACAACGAATGGATCAAGTTATAAGAACACATATGAACA
ATGATAATAATAGTAATGCGGACACTTCCAAACTAGAACAACAAAAACAT
TTGGAGAATACTCCACAGCAACCTGTCACACCAACAGACATACAAGATGT
CGCTTTCTAACATCTTCTCTCTAACTCTCTCAAAAAATAAAtacctttcc
aaaaaaatattaaaaatcgaaaatcaaattattatgaACAACCGAGAAAT
TGTTCAAGGGACACCAATAAAAATCTACCGTTCAACACCACCTTCCATCG
CCGTTTTTGCAATTGTACCGTTTTTCTGCTTCAAATTTTTCGTAACAGAT
TCGATCCAGAAAGTTCCTAGATGGATAGAAAATGACTGGAAATGCTTTCT
TACTATAAAACATCCTTTCTTATattagttttatttatttttacacaaaa
acTGTTCAAGTTATTGTACAAACTTCTATATTTATTAACAAAAATACCTt
gtcaccaaaacgaggctaattATTTCGATAccatttactttttattttaa
ttttttgactgCAAAGTTCCTAAaagattatatttttgtttgtatgtttg
tttgtttgtatcAGTGTGTCAGTGTGTATTGTATTGTTCTTCTAACTTTG
TAAGTGTTGTCTTTTGTTcttcaatgttatttttattgtttttctttttg
aagtgAGGGTAAATTTATATGCGTCTGGAACTTTAAACCCCAAAAAACtt
gtgaatatttttaaattttaaattaacGACAAAATTCCAACGCATTTTTT
TTACTATTGTAACTTTTTTATATCGATACGAGAAGGATTTTATTACTATT
AAATTGACTGTTCTGTATCCCCTTCAGAAATTTATTATGGAAATTTTAGG
TAGGAAAACGAAATCTTTTTCAAAGTACAATTGTTCATATTTTATGATAG
ATTTTTATTAGTTATACTTTTTATTACTGTTCCCTACACaagtttttaaa
acaaaaacacaagataaaagcataaaatggcgAAACTCATgaaaaaact
Run BLAST on NCBI

transcript from alignment at sc0000562:113067..118808+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026085 ID=TCONS_00026085|Name=TCONS_00026085|organism=Clytia hemisphaerica|type=transcript|length=5742bp|location=Sequence derived from alignment at sc0000562:113067..118808+ (Clytia hemisphaerica)
CTCACTCTGACAAGAACAACGTGCAAACAGCACACAGAGAAGAGAAAGCT
CTATCGAGAAGACCCACTCAGCCAATAAAGGCATCGGTAGAAAGAAGCAG
GCAAGCCAAAAGTCTTTACAATTCGACGGTGACAAGACGATGCAAGCCTA
GCTGACTACGAAAGGGTCTTCGAATACAATTTCCGTCAAACATATTGCTA
CAATTATTGATTTACATTGAGATTTTATATACCTGAAACATTTTATACAA
AATAGTTATGGATTTAATGTGTAACGAAGGATCGGCTAGTTCGAGCGTAC
AACGAACATACTTGGACAAAAACTTGATAAAAGATGGTAGAGTTTTAGAT
AGACTGTTAAAAATTGAAGATCATTATATACCTAGATGTGACTATtttaa
aattgtacaaaaagaGATAAAACCTTTTATGAGGAAACTAGTTGTCACAT
GGATGTTTGAAGTAAGTATTTTTACAGATATATTTTTGATCTGTTTGAAT
ATTGTTACGATAAAAGTTTCTGGattctttcgaatgttttgttttggatt
TTGGACGCAAATTTGGTTACCATTTTAAGCAATGCATGTGCGTGCCTGCG
TGCGTCATTtcgattcgaacgttcgaaatgtTTCACCTTGGGGTTTTCCT
GGATGAAATTccttaaaataataatattttggGTTTTTCATATCAGGTTT
GCGAAGAATCGAAATGTGAAGATGATGTTTTCCCGTTGGCTGTGAACTTA
TTAGATAGATTTTTATCCATTGTTAGCATACGAAAAACACAACTACAACT
ACTTGGGACTTCATGTATGTTTATAGCATCAAAATTGAAAGAGACAATAC
CATTGACTGCAGAAAAATTAGTTATATATACAGAcaattcgataaaattg
gaagaATTATTGGTGAGTATTtatatatttaatttttttgaacattaaaa
aaagCATCAACCAATTTTGAAGACATTTCTTGAAATATCATGGCAGGCAT
AGACCCCCCTGTTTATTGTACGTTGTTGAGGTCTATTTTATCTTTCGAGG
TCTAGCANTGCTACAATTATTGATTTACATTGAGATTTTATATACCTGAA
ACATTTTATACAAAATAGTTATGGATTTAATGTGTAACGAAGGATCGGCT
AGTTCGAGCGTACAACGAACATACTTGGACAAAAACTTGATAAAAGATGG
TAGAGTTTTAGATAGACTGTTAAAAATTGAAGATCATTATATACCTAGAT
GTGACTATtttaaaattgtacaaaaagaGATAAAACCTTTTATGAGGAAA
CTAGTTGTCACATGGATGTTTGAAGTAAGTATTTTTACAGATATATTTTT
GATCTGTTTGAATATTGTTACGATAAAAGTTTCTGGattctttcgaatgt
tttgttttggattTTGGACGCAAATTTGGTTACCATTTTAAGCAATGCAT
GTGCGTGCCTGCGTGCGTCATTtcgattcgaacgttcgaaatgtTTCACC
TTGGGGTTTTCCTGGATGAAATTccttaaaataataatattttggGTTTT
TCATATCAGGTTTGCGAAGAATCGAAATGTGAAGATGATGTTTTCCCGTT
GGCTGTGAACTTATTAGATAGATTTTTATCCATTGTTAGCATACGAAAAA
CACAACTACAACTACTTGGGACTTCATGTATGTTTATAGCATCAAAATTG
AAAGAGACAATACCATTGACTGCAGAAAAATTAGTTATATATACAGAcaa
ttcgataaaattggaagaATTATTGGTGAGTATTtatatatttaattttt
ttgaacattaaaaaaagCATCAACCAATTTTGAAGACATTTCTTGAAATA
TCATGGCAGGCATAGACCCCCCTGTTTATTGTACGTTGTTGAGGTCTATT
TTATCTTTCGAGGTCTAGcagaaaagttaaaaaactaaaaagttcTCCTA
ATGAGTGTGTGAAAATTCCGAAATCATTATATGCTTCTTTCTGAAGCCAT
TTCAAGGATTGTTAAATAAATGAATGAGTACTCAATCAACTAAATATCGC
TTTTTTATTGCCTTCTTTGCAAATGTTTCTTTATGCCAACAATAAAATGG
TCGGCCCTGTTTTGCCTTATTTTGGATAAAGCTCTAGAGAACTTTTCCTG
CACGTGTTTTTACTTTTCTGAATGTAAATTCGAGAAAGAGATTTTAGCTT
TTTCGGTGCCTTTTAAATTATGACGTAGTAGTTCCCATAGAAACTTTTGT
TTCAGCCTAAAGTAACAAAAGCCAAtgttgtgttttgttttgtcgcATTT
ATGTTCGAAACGTTTGgttctttttgttattttcctttgtttactttttg
attttttaactgTTTGATTACACGGGaaaaaagctttttctgcttAGCCA
TCAGTCACTGAAACTTTGGTGTTGTATTGCATATTTGACTGAAACTGGCG
CCTCTAATACCTTTGGCCTTTATTCAATTAATCTATCTCGAAAAAAGCTA
AACGATCACTTCAGTCCGGAAAGTCGTTATAAGTTGATCATCAACATAAC
TTTTGCTCTGCGTTTTTCGTCAATCCATTTTGTTGTGGTATTTTAAGAAA
GTGTTCAGAAGCAATGACACTCTAAAATTTGTCTCTACCATACTTGAAAA
CAAGTTTGTTATTCTACAGGAAACTAAACGTCAAGAAAACATGATTTCAT
GTAAACAAATTATGACGGACTTTTCTGAATAATTTCTCatctttgtattt
ttcaggacTGGGAAATCTTAATCTTGAACAAACTGAGATGGGATATCGCG
GCTATAGTTCCAAACGATTTTCTAGAATTCCTCTTCTCTCGTATCACTGT
ACCAGAATGTCTTGAAAAAGATTACATCCTAAAACACTGTCACACTTATA
TCGCTCTCTGTTGTATAGGTATGTTtacttttttcctctttttagtCTTG
TGGCCATATATCTATAATGAgtttttaattgatttaaatttataatttat
caagatttgaggaaaattttaatgatttctttttcctttttcgtCATTTT
ATGTGAAATTTTAACTGCGTGACAAATTTATGAATGCTGACACGaaacaa
caaacaaaatatATTGTGCTTGCATCTCACTTTCATGGTagatttaaatt
tcattaattgaATTCGCATTTTTACTCTACCTTCAGATTTCCTTTTCACC
AACTTAAATTCTCCATCAATGATTGCAGCTGCAGCAATTTGCGCTACATT
TCAGAATTTACGATACCAATTTGGTTCATTCTGTCCTTCAAACTATGAAC
TTATCCAAAGGTTGACCGAAATCACCGGCGTTGATGAGGTACGTATTGCA
CGTAGAAACATATTACTGTGACCTGTACTGGAATTCGTTAAAATTTTGCA
GATACAGGTGATTCGATCGGTTCAAATGATTttaatcaaattattttcac
tcttaatctgtctcaattttcaatattgctGAAAAATAAATTACTGTTTT
AATTGTGTCCAGTCGTTTTTTCTAAACCTCAATCCTACGCGCCATTTTGA
CGTCACTAGATTGTGGCTGAACTGGAAAGGATGTCTATAATTTAACCTGG
TTTCTAATGAAGGAAAGTTTATAAGAAAacgaaaattctcaaatttcctT
CAAGATTTTGCCTATTTCAACATAAAATTCCAACATCTGAAATTTCCCTT
TAGAgtatttcttataaataaaatttttaatgacCTTCCTTTCTCTCtaa
tttttcaggattgtttgGTTGAATGTCGACAACGAATGGATCAAGTTATA
AGAACACATATGAACAATGATAATAATAGTANCTGTTGTATAGGTATGTT
tacttttttcctctttttagtCTTGTGGCCATATATCTATAATGAgtttt
taattgatttaaatttataatttatcaagatttgaggaaaattttaatga
tttctttttcctttttcgtCATTTTATGTGAAATTTTAACTGCGTGACAA
ATTTATGAATGCTGACACGaaacaacaaacaaaatatATTGTGCTTGCAT
CTCACTTTCATGGTagatttaaatttcattaattgaATTCGCATTTTTAC
TCTACCTTCAGATTTCCTTTTCACCAACTTAAATTCTCCATCAATGATTG
CAGCTGCAGCAATTTGCGCTACATTTCAGAATTTACGATACCAATTTGGT
TCATTCTGTCCTTCAAACTATGAACTTATCCAAAGGTTGACCGAAATCAC
CGGCGTTGATGAGGTACGTATTGCACGTAGAAACATATTACTGTCTGACC
TGTACTGGAATTCGTTAAAATTTTGCAGATACAGGTGATTCGATCGGTTC
AAATGATTttaatcaaattattttcactcttaatctgtctcaattttcaa
tattgctGAAAAATAAATTACTGTTTTAATTGTGTCCAGTCGTTTTTTCT
AAACCTCAATCCTACGCGCCATTTTGACGTCACTAGATTGTGGCTGAACT
GGAAAGGATGTCTATAATTTAACCTGGTTTCTAATGAAGGAAAGTTTATA
AGAAAacgaaaattctcaaatttcctTCAAGATTTTGCCTATTTCAACAT
AAAACTCCAACATCTGAAATTTCCCTTTAGAgtatttcttataaataaaa
tttttaatgacCTTCTTTTCTCTCtaatttttcaggattgtttgGTTGAA
TGTCGACAACGAATGGATCAAGTTATAAGAACACATATGAACAATGATAA
TAATAGTAATGCGGACACTTCCAAACTAGAACAACAAAAACATTTGGAGA
ATACTCCACAGCAACCTGTCACACCAACAGACATACAAGATGTCGCTTTC
TAACATCTTCTCTCTAACTCTCTCAAAAAATAAAtacctttccaaaaaaa
tattaaaaatcgaaaatcaaattattatgaACAACCGAGAAATTGTTCAA
GGGACACCAATAAAAATCTACCGTTCAACACCACCTTCCATCGCCGTTTT
TGCAATTGTACCGTTTTTCTGCTTCAAATTTTTCGTAACAGATTCGATCC
AGAAAGTTCCTAGATGGATAGAAAATGACTGGAAATGCTTTCTTACTATA
AAACATCCTTTCTTATattagttttatttatttttacacaaaaacTGTTC
AAGTTATTGTACAAACTTCTATATTTATTAACAAAAATACCTtgtcacca
aaacgaggctaattATTTCGATAccatttactttttattttaattttttg
actgCAAAGTTCCTAAaagattatatttttgtttgtatgtttgtttgttt
gtatcAGTGTGTCAGTGTGTATTGTATTGTTCTTCTAACTTTGTAAGTGT
TGTCTTTTGTTcttcaatgttatttttattgtttttctttttgaagtgAG
GGTAAATTTATATGCGTCTGGAACTTTAAACCCCAAAAAACttgtgaata
tttttaaattttaaattaacGACAAAATTCCAACGCATTTTTTTTACTAT
TGTAACTTTTTTATATCGATACGAGAAGGATTTTATTACTATTAAATTGA
CTGTTCTGTATCCCCTTCAGAAATTTATTATGGAAATTTTAGGTAGGAAA
ACGAAATCTTTTTCAAAGTACAATTGTTCATATTTTATGATAGATTTTTA
TTAGTTATACTTTTTATTACTGTTCCCTACACaagtttttaaaacaaaaa
cacaagataaaagcataaaatggcgAAACTCATgaaaaaact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014670XLOC_014670Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026085-exon-sc0000562-1491911889:113067..113527TCONS_00026085-exon-sc0000562-1491911889:113067..113527Clytia hemisphaericaexon
TCONS_00026085-exon-sc0000562-1510915933:113067..113527TCONS_00026085-exon-sc0000562-1510915933:113067..113527Clytia hemisphaericaexon
TCONS_00026085-exon-sc0000562-1575043694:113067..113527TCONS_00026085-exon-sc0000562-1575043694:113067..113527Clytia hemisphaericaexon
TCONS_00026085-exon-sc0000562-1491911889:114626..114841TCONS_00026085-exon-sc0000562-1491911889:114626..114841Clytia hemisphaericaexon
TCONS_00026085-exon-sc0000562-1510915933:114626..114841TCONS_00026085-exon-sc0000562-1510915933:114626..114841Clytia hemisphaericaexon
TCONS_00026085-exon-sc0000562-1575043694:114626..114841TCONS_00026085-exon-sc0000562-1575043694:114626..114841Clytia hemisphaericaexon
TCONS_00026085-exon-sc0000562-1491911889:115822..115984TCONS_00026085-exon-sc0000562-1491911889:115822..115984Clytia hemisphaericaexon
TCONS_00026085-exon-sc0000562-1510915933:115822..115984TCONS_00026085-exon-sc0000562-1510915933:115822..115984Clytia hemisphaericaexon
TCONS_00026085-exon-sc0000562-1575043694:115822..115984TCONS_00026085-exon-sc0000562-1575043694:115822..115984Clytia hemisphaericaexon
TCONS_00026085-exon-sc0000562-1491911889:117178..117329TCONS_00026085-exon-sc0000562-1491911889:117178..117329Clytia hemisphaericaexon
TCONS_00026085-exon-sc0000562-1510915933:117178..117329TCONS_00026085-exon-sc0000562-1510915933:117178..117329Clytia hemisphaericaexon
TCONS_00026085-exon-sc0000562-1575043694:117178..117329TCONS_00026085-exon-sc0000562-1575043694:117178..117329Clytia hemisphaericaexon
TCONS_00026085-exon-sc0000562-1491911889:117752..118808TCONS_00026085-exon-sc0000562-1491911889:117752..118808Clytia hemisphaericaexon
TCONS_00026085-exon-sc0000562-1510915933:117752..118808TCONS_00026085-exon-sc0000562-1510915933:117752..118808Clytia hemisphaericaexon
TCONS_00026085-exon-sc0000562-1575043694:117752..118808TCONS_00026085-exon-sc0000562-1575043694:117752..118808Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000562supercontigsc0000562:113067..118808 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.000245448	0.00060238	0.0421257	5.4214e-07	0.791765	0.0191265	0.214966	0.805296	2.08892	2.03723	0	0	0	5.64063e-05	0	0	0	0	0	0	2.75254e-08	0.013556	0	0	0	7.48701e-06
Blast
[Close]
BLAST of TCONS_00026085 vs. Swiss-Prot (Human)
Match: CCND3 (G1/S-specific cyclin-D3 OS=Homo sapiens GN=CCND3 PE=1 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 1.358e-76
Identity = 130/298 (43.62%), Postives = 190/298 (63.76%), Query Frame = 3 
Query:  258 MDLMCNEGSASSSVQRTYLDKNLIKDGRVLDRLLKIEDHYIPRCDYFKIVQKEIKPFMRKLVVTWMFEVCEESKCEDDVFPLAVNLLDRFLSIVSIRKTQLQLLGTSCMFIASKLKETIPLTAEKLVIYTDNSXXXXXXXXXXXXXXNKLRWDIAAIVPNDFLEFLFSRITVPECLEKDYILKHCHTYIALCCIDFLFTNLNSPSMIAAAAICATFQNLRYQFGSFCPSNYELIQRLTEITGVDEDCLVECRQRMDQVIRTHMNNDNNSNADTSKLEQQKHLENTPQQPVTPTDIQDV 1151
            M+L+C EG+  +   R   D  L+ D RVL  LL++E+ Y+PR  YF+ VQ+EIKP MRK++  WM EVCEE +CE++VFPLA+N LDR+LS V  RK QLQLLG  CM +ASKL+ET PLT EKL IYTD+++   +L DWE+L+L KL+WD+AA++ +DFL F+  R+++P    +  + KH  T++ALC  D+ F  +  PSMIA  +I A  Q L    G+   S  EL + L  ITG + DCL  C+++++  +R  +   + +++  +    +      P Q  TPTD+  +
Sbjct:    1 MELLCCEGTRHAP--RAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPR-DRQALVKKHAQTFLALCATDYTFA-MYPPSMIATGSIGAAVQGL----GACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAI 290
The following BLAST results are available for this feature:
BLAST of TCONS_00026085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CCND31.358e-7643.62G1/S-specific cyclin-D3 OS=Homo sapiens GN=CCND3 P... [more]
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