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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026124 ID=TCONS_00026124|Name=TCONS_00026124|organism=Clytia hemisphaerica|type=transcript|length=634bp
CTGCCTACTCCCTCGAAGTTGGAACACAAACTGGTACCACACCGCCAGCT
GTCCCCTGCCCAGACTCCCTCTGCAAAGGAAAATCTGACGGAAACTTCGA
ATATCACTACTATGGCCGATACAGAGCCAACTACTTCCTCCAATGCTCGA
ACGGATTAGCTTCTTGCCAACCATGCTTCCCATTGTCCTTGGAATTCAGC
GAAGGATGCAACCAATGTTTGTACAACCGAAAAGACGAGTGCGTCACCAC
ACAACCATGGGAACCAGCAACCACCTTCGCTTGCCCAGACAAATGCCCAG
CCCGTGGACCACACTTCAGCGGAAACATCAAAGACGACCATGAACCACGA
CAATACGTCGCTTGCTTCCACGGACAAACTGTTGGATGTATCGCTTGCCC
ATCAGGACTTTTGTTCAACGAGAAATGGAACGCCTGTTTGTACCAAGGAA
AATACAAGACCGAACCAGAATCCCCACCAAAACACTAAACGGTGTTTTAA
TTGTAATCGATTCAAATGGCATGAAGATCTCAACAGCCGATCAAAATAAT
GACAACAAACTAAAAACGAAAACATTTTATTCAATATCTTTTTAAACTCt
caatttttcttgattttacgcATATTCTTCTCTc Run BLAST on NCBI protein sequence of TCONS_00026124-protein >TCONS_00026124-protein ID=TCONS_00026124-protein|Name=TCONS_00026124-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
AYSLEVGTQTGTTPPAVPCPDSLCKGKSDGNFEYHYYGRYRANYFLQCSN
GLASCQPCFPLSLEFSEGCNQCLYNRKDECVTTQPWEPATTFACPDKCPA
RGPHFSGNIKDDHEPRQYVACFHGQTVGCIACPSGLLFNEKWNACLYQGK
YKTEPESPPKH Run BLAST on NCBI transcript from alignment at sc0000563:71526..77213+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026124 ID=TCONS_00026124|Name=TCONS_00026124|organism=Clytia hemisphaerica|type=transcript|length=5688bp|location=Sequence derived from alignment at sc0000563:71526..77213+ (Clytia hemisphaerica)
CTGCCTACTCCCTCGAAGTTGGAACACAAACTGGTACCACACCGCCAGCT
GTCCCCTGCCCAGACTCCCTCTGCAAAGGAAAATCTGACGGAAACTTCGA
ATATCACTACTATGGCCGATACAGAGCCAACTACTTCCTCCAATGCTCGA
ACGGATTAGCTTCTTGCCAACCATGCTTCCCATTGTCCTTGGAATTCAGC
GAAGGATGCAACCAATGTTTGTACAACCGAAAAGACGAGTGCGTCACCAC
ACAACCATGGGAACCAGCAACCACCTTCGCTTGCCCAGACAAATGCCCAG
CCCGTGGACCACACTTCAGCGGAAACATCAAAGACGACCATGAACCACGA
CAATACGTCGCTTGCTTCCACGGACAAACTGTTGGATGTATCGCTTGCCC
ATCAGGACTTTTGTTCAACGAGAAATGGAACGCCTGTTTGTACCAAGGAA
AATACAAGACCGAACCAGAATCCCCACCAAAACACTAAACGGTGTTTTAA
TTGTAATCGATTCAAATGGCATGAAGATCTCAACAGCCGATCAAAATAAT
GACAACAAACTAAAAACGAAAACATTTTATTCGGCATTTTTTAAAGTTCT
CACtcttgactgaaattttttttattctgtcACATTGTATATTAAAGTAT
TTAAATGCAATAAAACCAATCTCTCTCTACTAAAATCATGTCTTTTTAAT
ATATGGAATACAAATCAACTGACATCTCTTTTCAAAGCAACAGAAAATTT
ACCAAATCGTTCACTACTAGTATCACTGCACTCTTCCAAATGTTCTCCTG
AGAAGATGATTCAATTTGTTttctcgtttttctttttataagacacccct
gtctcagtgccccggtagaactttttccctcagtggggatgaagatttct
atcaaaatgccaatttgaatagaaaatctattgtttccagctcgaaaatt
ccagtggggatggttttggagtgcaattttctacattcaattttcaatgg
ggataaaatcatagagcaatttcgcagtggggttgaaattgtaggatatt
ttttccaccggggacgattttttggcctatttttccactggggtgggggt
ccaccgggtctgtgacacagggggtGTTATAAGGTTCCTCTCTCCTGACA
GTATAAACTAGAAGTTTTTTTCGGGAGGGCTGGAACCTTTTAGTGTTGTA
TTCTATGTTCGTGCCATTacttatatatataaaaaatgatTCAATAGATA
AAATTGATAGTATTTCATCCTAGTCAACATTCTTATTCATATTTTTAACA
AGTGGGAAtcagaaatctttttttagcTTTCAGACATAGGGGAAATACAA
TTTGACAGTACACATCCGTATCAGTAACCCGGTCAGATCCTCCTGGTGAg
taaattgttgaaaaaattgctaaaaacggTCTAATTTTAAGCACAATGGA
ATAATGAGTGGACTTGGTCAGAATTAATCTCATTTTTCCACCCCGGGCAg
aatttggaaatttgtatttaattttcgtattttgcGAATAACAACCCAAC
ATATTGAAACGCTTTTCTAtttgacacccctgtgtcacagactcgGTGGG
ACCCCAGTcatactggaaaatttggctaaaatggCGTCCCCTGTgggaaa
atacccaaaaatttCAGTacattgttttggttttcatcccatttgaaatt
gaatggaaaagaatgcactctaaaaccatcccactgaatttttacTCCCA
TTGGCATTTCAATAagaattttcatccccactgaaaataaaagttccagc
ggggctgtgaaacaggggtgttattTGGGCTCAAATATTGattaaaattg
ctaaaaattaGCGAAAAAGGCGAAATATCTTCATcgcaaaaaaacattta
aaaagacATTACTTAAAGTATCATGTTTACATAATCGTCAGATGTATTGA
ATAATTCCAAAGGTCATTTTCCATTTTCCGGTTCTGTCTTACTTATCTTT
ACTGGATACATCCGTTAAGTCAGTCAATACATAGTCGTTTCTCCTTTTCT
CATGGCTGTTGTGATATATTTGCCACTAAGTCCAGTGTTATCTTCAATGA
TTTTGCACAGGGTGATGTTAGGTCTACCAGATCGCCTATCTTCTCCGGGG
ATCCAGTTCAGTAGTTTTCAAGTAGGTTTATTGTGTCTTACAACATGACT
GGCTAAAGCTAAGCGTTGGCGACGGTCAACATTTAAAATTCAGGGCAATT
TACCATAGATTGAGCAATAGTTTGataattcttccaagaaatatcaAAGG
CTGCCGATTGAATTCTTGTATAGATAGAGCGGAGCCATATAACAGTATAG
ATTCAACACAAATTTCAGCACTTTAGTTTTGGTAGgtttcaaaatgtttg
atttcaaTACTTTGCGAAGGGAATGTTTCAGTGTAACTTCCAAGATATAG
AAAGTCGTCAACTCTTTCGATCCCTGAACCATCCGAGGAAAACACTTTGt
catcccgggggggggggTACTAGGGTTGGCGAATGAGGGGTATGTGCGGA
CGGGACCTCCGAAAACCGACCCTTAGAGAGACTGATTTTTGCTTAAAAGG
TGACCCTTAAAGAGACTTTATGAATTTTTTTTTCTATTTTTGAAAAAAGG
CATACCCTTAGAGAGACTttattacaattttttctctggaaatcaaaaaa
tttcctaaaaatcctgaattttccgacccttagagagactaatttaaaac
tttctgatttttccgacacCATTAGTGTGGTTTGATGTGgataaattttg
ttttattgcATTTAAGAATAGACCTACATTTTGACATGCTAGTTCCACAG
AACAAAGAAAAGTCTGAACAGCATGAGTATGATTTCCTAGTATAGCAATA
TGGTCTAGATCAGGTAGTCGCTCAGAAGGGTTTCTCCTACTGCGACGACG
TTTTAAAGTAAGGCCATATTGTCACTAGCAATTGACGATCCAAGAGCGTA
GTCCAGTACAATTATGAAGAGAAAAGGTGCTTAAGGATTGCCTTGAAAAA
CCCCAATCCCGATTATGAAAGGATCAGTTTGTTCTTTGCAGGATGTACTC
ATCGCAGGAGTGTCTCGATACATTACTTTAATGGCATTGACTACAGTTTT
AGGGATACCATAAGCTTGAAAAGAATTTGGAATATTTAATTTCACAATTa
ataaagtcaaaaactttgtggAAATCGGTGAACGGGATTAAGTTCTTTCA
AGTTCCTACATAAAGCAAGGACATAGGAGTTATAGGATTATATActttaa
aagtaatttgtcCTCTCTAGTTATCTAAAACCTTCATTTCACTCAATTTA
CTGGTAAAATTGTATGTCATTGAAATTTAGAATAGTAGTTCCATATGGTC
TCAAAACTATCAAATCATCCGTAGTTGATTGGATTTTTTGGGGTTTTTAT
TCGATCTATAAACTCCTGTAAACATAAAATTCAttacaaaaagttttatt
tatcTGCAGCCAAGCGCTTCTTCCCATAGGTAAGCCAGCATAGAGTGCTG
TAGTTTTATTGAGGAGCTGCTTCATTTCTTTCATGAATGATGAAAAGCCT
TTGTAAAATTTCGCGCACCCTTATATGGTCAGATATGACTAAATTACACC
ACTTTTTCTTGACATCACTATAAACTGAGCATTGTAAGAATAATTCTAAC
GATGACATGGACTTTGCCTCCAGGAAAGTCACCCCTaggaaaaattgcca
aattatTGATACTGGTAATATGCTTAAACTTAACATGGGGAGATGTGCTC
TGCATCTTCGATTCTTTGAATAGCAATATGATTGAGGCATGCGCTATAAA
TCTGATAGTCCGTCTCCCCAGATtaaatttcagagaaagctGAACTTTGG
AGCACGTGGTACTATAACGTATTGTTGaaatacacaaatttccaaACAAC
CCACTAATCTAACTTTAATCACCTGGAAATCATAATTACCGGGCTCGCAT
AACATCATCATTTAGCTTATTATAATTCTTCGTTACATCACAATGATAAT
ATCCTGTAATGTGGTAACAAATTTTGATGAGAACTCTGTAACTTCCGAGA
TTAGGAAAAAACGGTATGGGACGAGGAATGGTTGGCATAAACAGGTTATA
ATCTCTTATCACGTGGTCATTAGCGTGATTTTAAGGAATTTTATTGCATG
AGATGGGAAACAGATTGTTTGACAAAATGATAATACAGCACTTCCTCAAA
GCGCATCGACATTATTTTTAGTTTACCCGGAAACTtatataatcaaatca
attagaaaatgattttccaTGATAGGCCTCCAGTATAAAAACGTGGAgtt
ttgcatttcaaaatcaTCTTGCATCTGAAGACAACAACTTCAAGAAAAAG
ACAACAAAAATGAAGGCTTTTATTTTCATCACTCTTTTGGCTGGTAAGTA
TTTTATTATGTTAACAAATACATATTTCTTTGTCCTTTCAAGGAGTACTA
TTTTATCTATTTTCGCAAATGTCTAAAAAATGAAGCAATCTCGACTTCAA
CTTGATTGAATACGATTAGAATGATGTTCAAACATTTTTACTGGTCATGA
TGAACGATGGATACTAACAAAgcacttcttttttttcagctgCCTACTCC
CTCGAAGTTGGAACCCAAACTGGTACCACACCACCTGCTGTTCCATGCCC
AGACTCCCTCTGCAAAGGAAAATCTGACGGAAACTTCGAATATCACTACT
ATGGCCGATACAGAGCCAACTACTTCCTCCAATGCTCCAACGGATTAGCT
TCTTGCCAACCATGCTTCCCATTGTCCTTGGAATTCAGCGAAGGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGGAAACATCAAAGA
CGACCATGAACCACGACAATACGTCGCTTGCTTCCACGGACAAACTGTCG
GATGTATCGCTTGCCCATCAGGACTTTTGTTCAACGAGAAATGGAACGCC
TGTTTGTACCAAGGAAAATACAAGACCGAACCAGAATCCCCACCAAAACA
CTAAGAATCGAAATTGATTTAAACTGCAAGAAGATCTCAGGGGCAGTCAA
AATTGACAACAAACTAAAAACGAAAACATTTTATTCAATATCTTTTTAAA
CTCtcaatttttcttgattttacgcATATTCTTCTCTc Coding sequence (CDS) from alignment at sc0000563:71526..77213+ >TCONS_00026124 ID=TCONS_00026124|Name=TCONS_00026124|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0000563:71526..77213+ (Clytia hemisphaerica)
GCCTACTCCCTCGAAGTTGGAACACAAACTGGTACCACACCGCCAGCTGT
CCCCTGCCCAGACTCCCTCTGCAAAGGAAAATCTGACGGAAACTTCGAAT
ATCACTACTATGGCCGATACAGAGCCAACTACTTCCTCCAATGCTCGAAC
GGATTAGCTTCTTGCCAACCATGCTTCCCATTGTCCTTGGAATTCAGCGA
AGGATGCAACCAATGTTTGTACAACCGAAAAGACGAGTGCGTCACCACAC
AACCATGGGAACCAGCAACCACCTTCGCTTGCCCAGACAAATGCCCAGCC
CGTGGACCACACTTCAGCGGAAACATCAAAGACGACCATGAACCACGACA
ATACGTCGCTTGCTTCCACGGACAAACTGTTGGATGTATCGCTTGCCCAT
CAGGACTTTTGTTCAACGAGAAATGGAACGCCTGTTTGTACCAAGGAAAA
TACAAGACCGAACCAGAATCCCCACCAAAACACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026124-exon-sc0000563-1491911889:71526..72098 | TCONS_00026124-exon-sc0000563-1491911889:71526..72098 | Clytia hemisphaerica | exon |
| TCONS_00026124-exon-sc0000563-1510915933:71526..72098 | TCONS_00026124-exon-sc0000563-1510915933:71526..72098 | Clytia hemisphaerica | exon |
| TCONS_00026124-exon-sc0000563-1575043694:71526..72098 | TCONS_00026124-exon-sc0000563-1575043694:71526..72098 | Clytia hemisphaerica | exon |
| TCONS_00026124-exon-sc0000563-1491911889:77153..77213 | TCONS_00026124-exon-sc0000563-1491911889:77153..77213 | Clytia hemisphaerica | exon |
| TCONS_00026124-exon-sc0000563-1510915933:77153..77213 | TCONS_00026124-exon-sc0000563-1510915933:77153..77213 | Clytia hemisphaerica | exon |
| TCONS_00026124-exon-sc0000563-1575043694:77153..77213 | TCONS_00026124-exon-sc0000563-1575043694:77153..77213 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000563 | supercontig | sc0000563:71526..77213 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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