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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026280 ID=TCONS_00026280|Name=TCONS_00026280|organism=Clytia hemisphaerica|type=transcript|length=3749bpRun BLAST on NCBI protein sequence of TCONS_00026280-protein >TCONS_00026280-protein ID=TCONS_00026280-protein|Name=TCONS_00026280-protein|organism=Clytia hemisphaerica|type=polypeptide|length=578bp MAFDCKVQYLDDTDPFNSTSFPEPSRPPAYSFRDGVPVCTQLPAVHRLLSRun BLAST on NCBI transcript from alignment at sc0000566:150780..168211+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026280 ID=TCONS_00026280|Name=TCONS_00026280|organism=Clytia hemisphaerica|type=transcript|length=17432bp|location=Sequence derived from alignment at sc0000566:150780..168211+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000566:150780..168211+ >TCONS_00026280 ID=TCONS_00026280|Name=TCONS_00026280|organism=Clytia hemisphaerica|type=CDS|length=26055bp|location=Sequence derived from alignment at sc0000566:150780..168211+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026280 vs. Swiss-Prot (Human)
Match: FHOD3 (FH1/FH2 domain-containing protein 3 OS=Homo sapiens GN=FHOD3 PE=1 SV=2) HSP 1 Score: 438.728 bits (1127), Expect = 1.066e-130 Identity = 217/345 (62.90%), Postives = 265/345 (76.81%), Query Frame = 2
Query: 260 CKVQYLDDTDPFNSTSFPEPSRPPAYSFRDGVPVCTQLPAVHRLLSAPHNLDDCALQLSHNLNYLDLELSIDEQDDLLEGFKDN----RKNTIILRTQLSVRVHNIIAKLLTASGRDLRRALFSLKQIFQDDKDLVHEFVTNDGLSCLITVGTDADQNYQNYILRAIGQIMLYVDGMNGVIEHNETIQWLYSLLSSKYRLVQKTSLKLLLVFVEYTENNAYLVWQAALTIDESRGSMGMRGIVEILNAEQDANTDEDLLVYALTLVNKVLYALPDQNQFYDVVDSLEEQNMETIMEALLKRTPRNGELVEQCNIYELSLKSEDGDDFDISSLQAPAGIRMGRRST 1282
C+VQ+LDDTDPFNST+FPEPSRPP ++FR+ + + TQL VHRLL APH LDDC LQLSHN YLDLE ++ EQ D LEGF+D+ +K++IILRTQLSVRVH I KL +SGRDLRRALFSLKQIFQDDKDLVHEFV +GL+CLI VG +ADQNYQNYILRA+GQIMLYVDGMNGVI NETIQWLY+L+ SK+RLV KT+LKLLLVFVEY+E+NA L+ QA +D RG I+EIL E+ D +LLVYA+TLVNK L LPDQ+ FYDVVD LEE + + + L + + +LVEQ NIYE++L+ EDGD+ ++ P+G R RR++
Sbjct: 6 CRVQFLDDTDPFNSTNFPEPSRPPLFTFREDLALGTQLAGVHRLLQAPHKLDDCTLQLSHNGAYLDLEATLAEQRDELEGFQDDAGRGKKHSIILRTQLSVRVHACIEKLYNSSGRDLRRALFSLKQIFQDDKDLVHEFVVAEGLTCLIKVGAEADQNYQNYILRALGQIMLYVDGMNGVINRNETIQWLYTLIGSKFRLVVKTALKLLLVFVEYSESNAPLLIQAVTAVDTKRGVKPWSNIMEIL--EEKDGVDTELLVYAMTLVNKTLSGLPDQDTFYDVVDCLEELGIAAVSQRHLNKKGTDLDLVEQLNIYEVALRHEDGDE---TTEPPPSGCRDRRRAS 345 HSP 2 Score: 338.961 bits (868), Expect = 2.845e-96 Identity = 168/340 (49.41%), Postives = 242/340 (71.18%), Query Frame = 1
Query: 2683 RKYVRLFWQEIKQIGLPQPIDKT----IWNEVKPLDVDTKKLEHLFENRVKQTMKRAESVDKLAKKEITVLDLKRAQAINIVLTKLPPIRVMKQAILDMDQAVVDREGIEKIMTMVPTDEERTKLQEAQMQSPDTPFAHAESFLMSLSSVSELSARLNLWMFKVDYDNLEKEIGEALSDLKLLCSEIRKSDTFRKILGLLLSIGNFLNGVNIKGFSIQYLEKVPEVKDTVHKQSLLFHICNMMMEKYPESTDLYSEFGAVCRASRCDYDSITSQLKKLDDMCKKSWEYLRLIAKHDSSSPLKQKLTDFLSDAGERIAILXXXXXXXXXXXXXELHYIGEP 3690
+K +RLFW E++ P ++ +W++++P+ VDT +LEHLFE++ K+ ++ ++EI VLD KR+ AINI LT LPP R +K AIL+ D+ +++EGIEKI+TM+PTDEE+ K+QEAQ+ +P+ P AE FL++LSS+SELSARL+LW FK+DY+ EKE+ E L DLK ++ + T IL LL+IGNFLNG N K F + YLEKVPEVKDTVHKQSLL H+C M++E +P+S+DLYSE GA+ R+++ D+D + L +++ CK SW++L+ IAKH+ LKQ++++FL D ERI IL++VHRR+ NR L ++G P
Sbjct: 891 KKTIRLFWNEVRPFDWPCKNNRRCREFLWSKLEPIKVDTSRLEHLFESKSKELSVSKKTAADGKRQEIIVLDSKRSNAINIGLTVLPPPRTIKIAILNFDEYALNKEGIEKILTMIPTDEEKQKIQEAQLANPEIPLGSAEQFLLTLSSISELSARLHLWAFKMDYETTEKEVAEPLLDLKEGIDQLENNKTLGFILSTLLAIGNFLNGTNAKAFELSYLEKVPEVKDTVHKQSLLHHVCTMVVENFPDSSDLYSEIGAITRSAKVDFDQLQDNLCQMERRCKASWDHLKAIAKHEMKPVLKQRMSEFLKDCAERIIILKIVHRRIINRFHSFLLFMGHP 1230 The following BLAST results are available for this feature:
BLAST of TCONS_00026280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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