TCONS_00026289 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026289
Unique NameTCONS_00026289
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length801

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026289 ID=TCONS_00026289|Name=TCONS_00026289|organism=Clytia hemisphaerica|type=transcript|length=801bp
CTTTATTCCATTTATTTGTAAAAGATTTAACAAAGAATCAAAAATAAACA
TGAGTGGCATCAAAGGAAAAGAGTACATTCTGGTCAAAAAGTTCCATGGA
AAACCAACTCCTGAAAATTATGAAGTCAAAGAATTCGAACTTCCTGAATT
GAAAGATGGAGAGTTTGCGATGGAGGTTACTTACCTAACTGTTGATCCCT
ACATGCGCATCCCAGCTTTCACTGTTGAAGGCCAACGTATGCCTGGAGAA
GGTGTTGGAGTaGTTGTTCAAAGTAAGAATGCAGACTTCCCAGTCAAATC
AAAAGTCATGGGAAAGACAGGATGGGCTACACATGTTGTTGGAAATGCTC
AGGACCTTCGAATTCTTCCAAATGATATACCTCAGCTGTACTATTTCCTT
GGTCCATTAGGAATGCCAGGATTGACAGCGTACGTCGAGATTCAAAAAAC
AGAACCCAAATCCGGAGATGTGTTTTTTGTCAATGCAAGCGCCGGAGCTG
TTGGATCTGTTGTTGGTCAAATGGCAAAACGAAAAGGATGCAAAGTCGTT
GGGTGTGCAGGTTCAGAcgagaaagttgcgtatttgaAAACGATTGGATT
TGACGAAGCTTTTAATTACAAAACGAATAATTTCGCTGAAGCCATGAAGG
CTGCTTGTCCTGATGGTATCGACTGTTTTGTGGACCATGTTGGAGGATCG
CAATACGATACAGTAATGCCGATGATGAAATTTGGTGGTCGTGTTGCTCT
CGTCGGTGAAATCTCCGGTTACAATGAGACTGAAAAACCACCAGgtatga
a
Run BLAST on NCBI

protein sequence of TCONS_00026289-protein

>TCONS_00026289-protein ID=TCONS_00026289-protein|Name=TCONS_00026289-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
FIPFICKRFNKESKINMSGIKGKEYILVKKFHGKPTPENYEVKEFELPEL
KDGEFAMEVTYLTVDPYMRIPAFTVEGQRMPGEGVGVVVQSKNADFPVKS
KVMGKTGWATHVVGNAQDLRILPNDIPQLYYFLGPLGMPGLTAYVEIQKT
EPKSGDVFFVNASAGAVGSVVGQMAKRKGCKVVGCAGSDEKVAYLKTIGF
DEAFNYKTNNFAEAMKAACPDGIDCFVDHVGGSQYDTVMPMMKFGGRVAL
VGEISGYNETEKPPGM
Run BLAST on NCBI

transcript from alignment at sc0000566:196218..201253+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026289 ID=TCONS_00026289|Name=TCONS_00026289|organism=Clytia hemisphaerica|type=transcript|length=5036bp|location=Sequence derived from alignment at sc0000566:196218..201253+ (Clytia hemisphaerica)
CTTTATTCCATTTATTTGTAAAAGATTTAACAAAGAATCAAAAATAAACA
TGAGTGGCATCAAAGGAAAAGAGTACATTCTGGTCAAAAAGTTCCATGGA
AAACCAACTCCTGAAAATTATGAAGTCAAAGAATTCGAACTTCCTGAATT
GAAAGATGGAGGTACGATTGTATTATTTTTGTCTTGGATACTGTTTTTGT
ATAATTATAAGGATTTTCATCATTAGAATCCTTTTAATGGTTCTCGTAGC
GTATTAACCATTCTTTAGCACCACACTCTACTCTAAAATAATGCATTTCT
TGTGATGACCGTATCTGCTaaataatcaaaataacatTTCCCGAAAAAAA
ACGTGATATGGATGAAAAACCTTCTTACAGAGCTTAGAATAGTTTTCCGG
AGTTTTCCGGATCTTCCAGCCGTTAAAGCGAATGATGTAGATATATAAAA
AAAcccgtataattataaaaatactagtctcttttttatgttttatcttt
attttatttagtattttcaacacttgctctccttgaggtcagatctctga
tcttcaccatagtATGAAAATTAATCTCTCCTGTCCGAACTACAAACTTA
CATAAAAATAGCCGAAGTCTTTTCTTCTTAGAAAGACGATTTTACCACGA
GAAGATGGCAAATCTTCTCTGGGTCCCTCTGACTCTGGGTCACTCCTGGC
TTCGGACAGGCTGGCTGTCCTTTGAGACAGTAAGGCTCATTAACCCTAAT
TTTGTACATTTTAGAGTTTGCGATGGAGGTTACTTACCTAACTGTTGATC
CCTACATGCGGTTTGTATTCTATTTATTGTTGAACATTTTCAATATAATT
TACAAGATTTAGTACGCTTGCAATCCTAAAATCATGCTAATTACCTCCAA
TATACCTTTTCGGAATAAACAAATAATCTAAGATGCTAGCAGAAGCTAtg
agagaaagaaaaacaacaactttgATTTCACTTTAGCCGATTTTTGAGGC
TTTGGCATCAATGTTTAGGCTGTTTGCAAGGCGTTTTGATTGAATTTCTc
cattttggtaatttttcacTTCCACAAAAGTGTCACATGGCAACATCGTG
AGGAGGTGGATTGTTTATAAAATATAGTTATCCAGTACTTCATTTTTGAA
AGAGTAATACTTgaagtttttaaacagctttctTCAATTCTTAGCATCCC
AGCTTTCACTGTTGAAGGCCAACGTATGCCTGGAGAAGGTGTTGGAGTGT
AAGTGTTTActtttggaaatcttttcttATTTCTTCTCCTACTTAGGTTT
GATTGCAAAGTTCTTTTgtaaaaacaagtaaatttcAGCTGGGACTTTTG
GCTGTTATTATTTGTTCATggttttcaggcttaaatgttcttaaaatgtt
cttagaatgttcgtATTATTCTTATTTCACATTCGTTTATTGATTTGAAA
GTGGATTCAGATTAACAATTTCTTAGCTGTTCTGAAATTTGAGACTGGAA
TTGTTCTTTATTTGTTCCAAAGTTTTGCCAAAAActgagcctcatgttct
tataaaactgttcttataaaagaaaaagcgtgcaATAAAAAAACGCAACG
AAGTTTTagctttgataatttttttgtctttttatagaGTTGTTCAAAGT
AAGAATGCAGACTTCCCAGTCAAATCAAAAGTCATGGGAAAGACAGGATG
GGCTACACATGTTGTTGGAAATGCTCAGGACCTTCGAATTCTTCCAAATG
ATATACCTCAGCTGTACTATTTCCTTGGTCCATTAGGAATGCCAGGGTAC
GTATGACTTTAATAGGGTTGATATGTCTCCATAAAAATTCTAAATCTTAA
GTTACCTCCTTCTTAACTGACAAAGCAAAATAAGTTAGTAAgtagatttg
aaagaaattttcccTGTAGCGCTCTTTGAGAATGATCAGGTGCCACATAA
ACAAAGGGGTGGAACGAGCGGGAGGGCTGGATatcttctaattttgataa
aCGAGGGGCCTTGGAAATTGTACTAACTTTGCTTGAGTGAGAGAAAAATA
GCTTAAAGCAGCTGTTCATGATGTGATCCCTTCAGATTGACAGCGTACGT
CGAGATTCAAAAAACAGAACCCAAATCCGGAGATGTGTTTTTTGTCAATG
CAAGCGCCGGAGCTGTTGGATCTGTTGTTGGTCAAATGGCAAAACGAAAA
GGTCAGCATCGATTATTTTCTTGCTTTATCGGGTGCATCAAGAAAAAGTT
GAAGTAGAGTCTACATAActcgtgtatcccaggctttatttacgttactg
atagacgccagagaattatctagcgctatcagtaaacataaaaaagctga
taatacgcagggaacaaAGTTGGTTGATTCTACATAACTCTAAAAACCAG
CAAAACCAGACAATTTGATGAAATATAATAAGCAGCATACATAACTCTAA
CGTTTTAACCTTTGAAAgccgctaacttttttgaaaaaggccaataagtt
catcatttttttctggaaatttattctttcaaaggcaatttctcgaccag
aaCAAAcaattcaggtatcaactttggtatcgttggaaagctctttctct
cagctacaaaaaatagcagattttttttctctgaatctcaagtggtcagg
agttatgaccaaaagactgtgtatcggtaaaatgaccttttcaaaacgta
tatatacgtatttcGCCTCCTAAGGGTTAAGGAGATGAATAAGTCAAAGT
GTCAGGAAGAGTTCGACCTTATGAAGGCAAAACCCTTTTGATTATCTCGT
AAgacaagaaaaagtttttaaaagaaaaacaagcacTGAAATCTATCAAC
TTTGTCTTTGTTCAAGAAAGGTTTGCAGGGGATATTATTTTCCGTGTATG
TTAGTTCGCAAAGCTTTTACAGATTTTgggcttgtttttattaaattatc
tTGCTTTATTCCTGACATTTGTTTGAATTCTATCACGACGAATGATATAT
CTAAACCATCGTTgaatcattagttttttctcttattttagGATGCAAAG
TCGTTGGGTGTGCAGGTTCAGAcgagaaagttgcgtatttgaAAACGATT
GGATTTGACGAAGCTTTTAATTACAAAACGAATAATTTCGCTGAAGCCAT
GAAGGCTGCTTGTCCTGATGGTATCGACTGTTTTGTGGACCATGTAAGCT
TTCGGTTTTATTGTTGCTGTTCTGCTTTTCTTCATTGCTTAGTCTCTACC
TCTAAGCGAAGGTTCTAAAATTCTCGTTTTGATTGACAGGTAAAACTAAC
AATTTTGATTGGATAGAAATCTGTTAGAATGTATAAAAACTTGAACAGTC
TTGAACAGAGTTTAGACACTTTACTCTTGCACCTTATTTACATCAATTTT
AGCTAGAATAGGATTTTAAAAGATGTGAGATCACATTGAAAAGctatatt
ctcaacttcagttgagctataatctgagaatgtctgtatgaatgtctgta
tgtatgtatgtatgtccgtccgaaaactttagggcaggctggacacttca
aaaaaggtcggatttggctgaaatttggcacacttgttccttNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGccttgggacgagttttttg
ccaaaacgaggctaaagctttgaagcagcctacagccctccaaaatggtc
gcatttggttgaaatttggcacaattgttcattgggtaaatatctggggg
tctgcaattgggcctatgaataatttgaagccactgaagttgagcccagt
gcgttgcgcacgttcgactatttttcAACACTGTTTTCATTTGAATGGTA
GTACTGAATAGTGAAACAGAATTGAAAGTCTATATTAAAAAAACGCTAGC
CATTAAAAGCTTTACACTGTCCAATCAAAAAAACCCTGCTCAATTCCAGT
CGCACTGAAAGCCATGGACTTATAATATGGATCTATATAATCATAGTTCA
GAAATGAacggagaaactttttttttcctaATACTTAAAGTTTCCTGCTC
TTTCAAGCATTCGTCAGTTAGTTTTATAGATCTATATATCAATTCAACAA
AACTTTCTAACCTCTTTTTACAGGTTGGAGGATCGCAATACGATACAGTA
ATGCCGATGATGAAATTTGGTGGTCGTGTTGCTCTCGTCGGTGAAATCTC
CGGTTACAATGAGACTGAAAAACCACCAGgtatgaa

Coding sequence (CDS) from alignment at sc0000566:196218..201253+

>TCONS_00026289 ID=TCONS_00026289|Name=TCONS_00026289|organism=Clytia hemisphaerica|type=CDS|length=5586bp|location=Sequence derived from alignment at sc0000566:196218..201253+ (Clytia hemisphaerica)
TTTATTCCATTTATTTGTAAAAGATTTAACAAAGAATCAAAAATAAACAT
GAGTGGCATCAAAGGAAAAGAGTACATTCTGGTCAAAAAGTTCCATGGAA
AACCAACTCCTGAAAATTATGAAGTCAAAGAATTCGAACTTCCTGAATTG
AAAGATGGAGAGTTTGCGATGGAGGTTACTTACCTAACTGTTGATCCCTA
CATGCGCATCCCAGCTTTCACTGTTGAAGGCCAACGTATGCCTGGAGAAG
GTGTTGGAGTaGTTGTTCAAAGTAAGAATGCAGACTTCCCAGTCAAATCA
AAAGTCATGGGAAAGACAGGATGGGCTACACATGTTGTTGGAAATGCTCA
GGACCTTCGAATTCTTCCAAATGATATACCTCAGCTGTACTATTTCCTTG
GTCCATTAGGAATGCCAGGATTGACAGCGTACGTCGAGATTCAAAAAACA
GAACCCAAATCCGGAGATGTGTTTTTTGTCAATGCAAGCGCCGGAGCTGT
TGGATCTGTTGTTGGTCAAATGGCAAAACGAAAAGGATGCAAAGTCGTTG
GGTGTGCAGGTTCAGAcgagaaagttgcgtatttgaAAACGATTGGATTT
GACGAAGCTTTTAATTACAAAACGAATAATTTCGCTGAAGCCATGAAGGC
TGCTTGTCCTGATGGTATCGACTGTTTTGTGGACCATGTTGGAGGATCGC
AATACGATACAGTAATGCCGATGATGAAATTTGGTGGTCGTGTTGCTCTC
GTCGGTGAAATCTCCGGTTACAATGAGACTGAAAAACCACCAGgtatgTT
TATTCCATTTATTTGTAAAAGATTTAACAAAGAATCAAAAATAAACATGA
GTGGCATCAAAGGAAAAGAGTACATTCTGGTCAAAAAGTTCCATGGAAAA
CCAACTCCTGAAAATTATGAAGTCAAAGAATTCGAACTTCCTGAATTGAA
AGATGGAGAGTTTGCGATGGAGGTTACTTACCTAACTGTTGATCCCTACA
TGCGCATCCCAGCTTTCACTGTTGAAGGCCAACGTATGCCTGGAGAAGGT
GTTGGAGTaGTTGTTCAAAGTAAGAATGCAGACTTCCCAGTCAAATCAAA
AGTCATGGGAAAGACAGGATGGGCTACACATGTTGTTGGAAATGCTCAGG
ACCTTCGAATTCTTCCAAATGATATACCTCAGCTGTACTATTTCCTTGGT
CCATTAGGAATGCCAGGATTGACAGCGTACGTCGAGATTCAAAAAACAGA
ACCCAAATCCGGAGATGTGTTTTTTGTCAATGCAAGCGCCGGAGCTGTTG
GATCTGTTGTTGGTCAAATGGCAAAACGAAAAGGATGCAAAGTCGTTGGG
TGTGCAGGTTCAGAcgagaaagttgcgtatttgaAAACGATTGGATTTGA
CGAAGCTTTTAATTACAAAACGAATAATTTCGCTGAAGCCATGAAGGCTG
CTTGTCCTGATGGTATCGACTGTTTTGTGGACCATGTTGGAGGATCGCAA
TACGATACAGTAATGCCGATGATGAAATTTGGTGGTCGTGTTGCTCTCGT
CGGTGAAATCTCCGGTTACAATGAGACTGAAAAACCACCAGgtatgTTTA
TTCCATTTATTTGTAAAAGATTTAACAAAGAATCAAAAATAAACATGAGT
GGCATCAAAGGAAAAGAGTACATTCTGGTCAAAAAGTTCCATGGAAAACC
AACTCCTGAAAATTATGAAGTCAAAGAATTCGAACTTCCTGAATTGAAAG
ATGGAGAGTTTGCGATGGAGGTTACTTACCTAACTGTTGATCCCTACATG
CGCATCCCAGCTTTCACTGTTGAAGGCCAACGTATGCCTGGAGAAGGTGT
TGGAGTaGTTGTTCAAAGTAAGAATGCAGACTTCCCAGTCAAATCAAAAG
TCATGGGAAAGACAGGATGGGCTACACATGTTGTTGGAAATGCTCAGGAC
CTTCGAATTCTTCCAAATGATATACCTCAGCTGTACTATTTCCTTGGTCC
ATTAGGAATGCCAGGATTGACAGCGTACGTCGAGATTCAAAAAACAGAAC
CCAAATCCGGAGATGTGTTTTTTGTCAATGCAAGCGCCGGAGCTGTTGGA
TCTGTTGTTGGTCAAATGGCAAAACGAAAAGGATGCAAAGTCGTTGGGTG
TGCAGGTTCAGAcgagaaagttgcgtatttgaAAACGATTGGATTTGACG
AAGCTTTTAATTACAAAACGAATAATTTCGCTGAAGCCATGAAGGCTGCT
TGTCCTGATGGTATCGACTGTTTTGTGGACCATGTTGGAGGATCGCAATA
CGATACAGTAATGCCGATGATGAAATTTGGTGGTCGTGTTGCTCTCGTCG
GTGAAATCTCCGGTTACAATGAGACTGAAAAACCACCAGgtatgTTTATT
CCATTTATTTGTAAAAGATTTAACAAAGAATCAAAAATAAACATGAGTGG
CATCAAAGGAAAAGAGTACATTCTGGTCAAAAAGTTCCATGGAAAACCAA
CTCCTGAAAATTATGAAGTCAAAGAATTCGAACTTCCTGAATTGAAAGAT
GGAGAGTTTGCGATGGAGGTTACTTACCTAACTGTTGATCCCTACATGCG
CATCCCAGCTTTCACTGTTGAAGGCCAACGTATGCCTGGAGAAGGTGTTG
GAGTaGTTGTTCAAAGTAAGAATGCAGACTTCCCAGTCAAATCAAAAGTC
ATGGGAAAGACAGGATGGGCTACACATGTTGTTGGAAATGCTCAGGACCT
TCGAATTCTTCCAAATGATATACCTCAGCTGTACTATTTCCTTGGTCCAT
TAGGAATGCCAGGATTGACAGCGTACGTCGAGATTCAAAAAACAGAACCC
AAATCCGGAGATGTGTTTTTTGTCAATGCAAGCGCCGGAGCTGTTGGATC
TGTTGTTGGTCAAATGGCAAAACGAAAAGGATGCAAAGTCGTTGGGTGTG
CAGGTTCAGAcgagaaagttgcgtatttgaAAACGATTGGATTTGACGAA
GCTTTTAATTACAAAACGAATAATTTCGCTGAAGCCATGAAGGCTGCTTG
TCCTGATGGTATCGACTGTTTTGTGGACCATGTTGGAGGATCGCAATACG
ATACAGTAATGCCGATGATGAAATTTGGTGGTCGTGTTGCTCTCGTCGGT
GAAATCTCCGGTTACAATGAGACTGAAAAACCACCAGgtatgTTTATTCC
ATTTATTTGTAAAAGATTTAACAAAGAATCAAAAATAAACATGAGTGGCA
TCAAAGGAAAAGAGTACATTCTGGTCAAAAAGTTCCATGGAAAACCAACT
CCTGAAAATTATGAAGTCAAAGAATTCGAACTTCCTGAATTGAAAGATGG
AGAGTTTGCGATGGAGGTTACTTACCTAACTGTTGATCCCTACATGCGCA
TCCCAGCTTTCACTGTTGAAGGCCAACGTATGCCTGGAGAAGGTGTTGGA
GTaGTTGTTCAAAGTAAGAATGCAGACTTCCCAGTCAAATCAAAAGTCAT
GGGAAAGACAGGATGGGCTACACATGTTGTTGGAAATGCTCAGGACCTTC
GAATTCTTCCAAATGATATACCTCAGCTGTACTATTTCCTTGGTCCATTA
GGAATGCCAGGATTGACAGCGTACGTCGAGATTCAAAAAACAGAACCCAA
ATCCGGAGATGTGTTTTTTGTCAATGCAAGCGCCGGAGCTGTTGGATCTG
TTGTTGGTCAAATGGCAAAACGAAAAGGATGCAAAGTCGTTGGGTGTGCA
GGTTCAGAcgagaaagttgcgtatttgaAAACGATTGGATTTGACGAAGC
TTTTAATTACAAAACGAATAATTTCGCTGAAGCCATGAAGGCTGCTTGTC
CTGATGGTATCGACTGTTTTGTGGACCATGTTGGAGGATCGCAATACGAT
ACAGTAATGCCGATGATGAAATTTGGTGGTCGTGTTGCTCTCGTCGGTGA
AATCTCCGGTTACAATGAGACTGAAAAACCACCAGgtatgTTTATTCCAT
TTATTTGTAAAAGATTTAACAAAGAATCAAAAATAAACATGAGTGGCATC
AAAGGAAAAGAGTACATTCTGGTCAAAAAGTTCCATGGAAAACCAACTCC
TGAAAATTATGAAGTCAAAGAATTCGAACTTCCTGAATTGAAAGATGGAG
AGTTTGCGATGGAGGTTACTTACCTAACTGTTGATCCCTACATGCGCATC
CCAGCTTTCACTGTTGAAGGCCAACGTATGCCTGGAGAAGGTGTTGGAGT
aGTTGTTCAAAGTAAGAATGCAGACTTCCCAGTCAAATCAAAAGTCATGG
GAAAGACAGGATGGGCTACACATGTTGTTGGAAATGCTCAGGACCTTCGA
ATTCTTCCAAATGATATACCTCAGCTGTACTATTTCCTTGGTCCATTAGG
AATGCCAGGATTGACAGCGTACGTCGAGATTCAAAAAACAGAACCCAAAT
CCGGAGATGTGTTTTTTGTCAATGCAAGCGCCGGAGCTGTTGGATCTGTT
GTTGGTCAAATGGCAAAACGAAAAGGATGCAAAGTCGTTGGGTGTGCAGG
TTCAGAcgagaaagttgcgtatttgaAAACGATTGGATTTGACGAAGCTT
TTAATTACAAAACGAATAATTTCGCTGAAGCCATGAAGGCTGCTTGTCCT
GATGGTATCGACTGTTTTGTGGACCATGTTGGAGGATCGCAATACGATAC
AGTAATGCCGATGATGAAATTTGGTGGTCGTGTTGCTCTCGTCGGTGAAA
TCTCCGGTTACAATGAGACTGAAAAACCACCAGgtatgTTTATTCCATTT
ATTTGTAAAAGATTTAACAAAGAATCAAAAATAAACATGAGTGGCATCAA
AGGAAAAGAGTACATTCTGGTCAAAAAGTTCCATGGAAAACCAACTCCTG
AAAATTATGAAGTCAAAGAATTCGAACTTCCTGAATTGAAAGATGGAGAG
TTTGCGATGGAGGTTACTTACCTAACTGTTGATCCCTACATGCGCATCCC
AGCTTTCACTGTTGAAGGCCAACGTATGCCTGGAGAAGGTGTTGGAGTaG
TTGTTCAAAGTAAGAATGCAGACTTCCCAGTCAAATCAAAAGTCATGGGA
AAGACAGGATGGGCTACACATGTTGTTGGAAATGCTCAGGACCTTCGAAT
TCTTCCAAATGATATACCTCAGCTGTACTATTTCCTTGGTCCATTAGGAA
TGCCAGGATTGACAGCGTACGTCGAGATTCAAAAAACAGAACCCAAATCC
GGAGATGTGTTTTTTGTCAATGCAAGCGCCGGAGCTGTTGGATCTGTTGT
TGGTCAAATGGCAAAACGAAAAGGATGCAAAGTCGTTGGGTGTGCAGGTT
CAGAcgagaaagttgcgtatttgaAAACGATTGGATTTGACGAAGCTTTT
AATTACAAAACGAATAATTTCGCTGAAGCCATGAAGGCTGCTTGTCCTGA
TGGTATCGACTGTTTTGTGGACCATGTTGGAGGATCGCAATACGATACAG
TAATGCCGATGATGAAATTTGGTGGTCGTGTTGCTCTCGTCGGTGAAATC
TCCGGTTACAATGAGACTGAAAAACCACCAGgtatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014771XLOC_014771Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026289-proteinTCONS_00026289-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026289-exon-sc0000566-1491911889:196218..196378TCONS_00026289-exon-sc0000566-1491911889:196218..196378Clytia hemisphaericaexon
TCONS_00026289-exon-sc0000566-1510915933:196218..196378TCONS_00026289-exon-sc0000566-1510915933:196218..196378Clytia hemisphaericaexon
TCONS_00026289-exon-sc0000566-1575043694:196218..196378TCONS_00026289-exon-sc0000566-1575043694:196218..196378Clytia hemisphaericaexon
TCONS_00026289-exon-sc0000566-1491911889:196982..197027TCONS_00026289-exon-sc0000566-1491911889:196982..197027Clytia hemisphaericaexon
TCONS_00026289-exon-sc0000566-1510915933:196982..197027TCONS_00026289-exon-sc0000566-1510915933:196982..197027Clytia hemisphaericaexon
TCONS_00026289-exon-sc0000566-1575043694:196982..197027TCONS_00026289-exon-sc0000566-1575043694:196982..197027Clytia hemisphaericaexon
TCONS_00026289-exon-sc0000566-1491911889:197412..197465TCONS_00026289-exon-sc0000566-1491911889:197412..197465Clytia hemisphaericaexon
TCONS_00026289-exon-sc0000566-1510915933:197412..197465TCONS_00026289-exon-sc0000566-1510915933:197412..197465Clytia hemisphaericaexon
TCONS_00026289-exon-sc0000566-1575043694:197412..197465TCONS_00026289-exon-sc0000566-1575043694:197412..197465Clytia hemisphaericaexon
TCONS_00026289-exon-sc0000566-1491911889:197855..198013TCONS_00026289-exon-sc0000566-1491911889:197855..198013Clytia hemisphaericaexon
TCONS_00026289-exon-sc0000566-1510915933:197855..198013TCONS_00026289-exon-sc0000566-1510915933:197855..198013Clytia hemisphaericaexon
TCONS_00026289-exon-sc0000566-1575043694:197855..198013TCONS_00026289-exon-sc0000566-1575043694:197855..198013Clytia hemisphaericaexon
TCONS_00026289-exon-sc0000566-1491911889:198303..198418TCONS_00026289-exon-sc0000566-1491911889:198303..198418Clytia hemisphaericaexon
TCONS_00026289-exon-sc0000566-1510915933:198303..198418TCONS_00026289-exon-sc0000566-1510915933:198303..198418Clytia hemisphaericaexon
TCONS_00026289-exon-sc0000566-1575043694:198303..198418TCONS_00026289-exon-sc0000566-1575043694:198303..198418Clytia hemisphaericaexon
TCONS_00026289-exon-sc0000566-1491911889:199259..199410TCONS_00026289-exon-sc0000566-1491911889:199259..199410Clytia hemisphaericaexon
TCONS_00026289-exon-sc0000566-1510915933:199259..199410TCONS_00026289-exon-sc0000566-1510915933:199259..199410Clytia hemisphaericaexon
TCONS_00026289-exon-sc0000566-1575043694:199259..199410TCONS_00026289-exon-sc0000566-1575043694:199259..199410Clytia hemisphaericaexon
TCONS_00026289-exon-sc0000566-1491911889:201141..201253TCONS_00026289-exon-sc0000566-1491911889:201141..201253Clytia hemisphaericaexon
TCONS_00026289-exon-sc0000566-1510915933:201141..201253TCONS_00026289-exon-sc0000566-1510915933:201141..201253Clytia hemisphaericaexon
TCONS_00026289-exon-sc0000566-1575043694:201141..201253TCONS_00026289-exon-sc0000566-1575043694:201141..201253Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000566supercontigsc0000566:196218..201253 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
84.799	86.6078	24.0204	14.7374	8.40498	7.34422	12.6358	13.5607	36.1585	29.0247	28.415	27.3797	129.096	97.6426	28.5847	34.8389	24.2486	23.0096	180.095	171.524	18.5416	19.6705	43.2892	42.1048	24.7076	27.334	10.4361	7.01587	11.9729	12.8084
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013149ADH_C
IPR016040NAD(P)-bd_dom
IPR011032GroES-like
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
Blast
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BLAST of TCONS_00026289 vs. Swiss-Prot (Human)
Match: PTGR1 (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 9.847e-63
Identity = 125/248 (50.40%), Postives = 160/248 (64.52%), Query Frame = 2 
Query:   59 IKGKEYILVKKFHGKPTPENYEVKEFELPELKDGEFAMEVTYLTVDPYMRIPAFTV-EGQRMPGEGVGVVVQSKNADFPVKSKVMGKTGWATHVVGNAQDLRIL----PNDIPQLYYFLGPLGMPGLTAYV-EIQKTEPKSGDVFFVNXXXXXXXXXXXQMAKRKGCKVVGCAGSDEKVAYLKTIGFDEAFNYKT-NNFAEAMKAACPDGIDCFVDHVGGSQYDTVMPMMKFGGRVALVGEISGYNET 781
            ++ K + L K F G PT  ++E+K  ELP LK+GE  +E  +LTVDPYMR+ A  + EG  M G+ V  VV+SKN   P  + V+   GW TH + + +DL  L    P+ IP L   LG +GMPGLTAY   ++    K G+   VNA+AGAVGSVVGQ+AK KGCKVVG  GSDEKVAYL+ +GFD  FNYKT  +  E +K A PDG DC+ D+VGG   +TV+  MK  GR+A+ G IS YN T
Sbjct:    2 VRTKTWTLKKHFVGYPTNSDFELKTAELPPLKNGEVLLEALFLTVDPYMRVAAKRLKEGDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIP-LSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQKLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRT 248
The following BLAST results are available for this feature:
BLAST of TCONS_00026289 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTGR19.847e-6350.40Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]
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