|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026352 ID=TCONS_00026352|Name=TCONS_00026352|organism=Clytia hemisphaerica|type=transcript|length=2978bpRun BLAST on NCBI protein sequence of TCONS_00026352-protein >TCONS_00026352-protein ID=TCONS_00026352-protein|Name=TCONS_00026352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp MQEGYREKEHLLSLKVMRLTKPSVKPLLHVTNEPQDLPGDIFNNSIFTDVRun BLAST on NCBI transcript from alignment at sc0000569:191458..200995- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026352 ID=TCONS_00026352|Name=TCONS_00026352|organism=Clytia hemisphaerica|type=transcript|length=9538bp|location=Sequence derived from alignment at sc0000569:191458..200995- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000569:191458..200995- >TCONS_00026352 ID=TCONS_00026352|Name=TCONS_00026352|organism=Clytia hemisphaerica|type=CDS|length=16224bp|location=Sequence derived from alignment at sc0000569:191458..200995- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00026352 vs. Swiss-Prot (Human)
Match: TPC13 (Trafficking protein particle complex subunit 13 OS=Homo sapiens GN=TRAPPC13 PE=1 SV=2) HSP 1 Score: 388.652 bits (997), Expect = 1.900e-124 Identity = 206/411 (50.12%), Postives = 281/411 (68.37%), Query Frame = 2
Query: 107 EKEHLLSLKVMRLTKPSVKPLLHVTNEPQDLPGDIFNNSIFTDVATTKGAEMLNCGELLSLPQAFGSIYLGETFSCYVSILNDSNQVTKDVTLKTDIQTSSQRFQLTASTPRDL-LSPDESQDEVLSYEVKELGTHILICAVSYTSPNGEKLFMRRFYKFQVLKPLEVKTKFYNGE------FDSVFLEAQVQNITTNPISMDHVTLDPSQYYMVLPLNELTPVGEETMEKGVDEIFDSTYINPMDMRQYLYKLIPKESHKLELRAMP-MSPIGKLDIVWRTNFGEIGRLQTSQLQRTAPTDVDIKLVVEESPDTISVEQQFEIACKLKNFGSSKMEAKXXXXXXXXXXXWCGISGKVLGPLPPNSSLEFKLHGIATRPGLHSIGGVRILDMNSTKMHDFDDICQLLVYTN 1315
++EHLL+LKVMRLTKP++ + VT E +DLPGD+FN + D +T GAE+L GE+L+LPQ FG+I+LGETFS Y+S+ NDSNQV KD+ +K D+QTSSQR L+AS L PD D+V+ +EVKE+GTHIL+CAVSYT+ GEK++ R+F+KFQVLKPL+VKTKFYN E D VFLEAQ+QN+TT+P+ M+ V+L+PS Y V LN ++ GE V Y+ PMD RQYLY L PK + + ++ IGKLDIVW+TN GE GRLQTSQLQR AP D++L +E PDT+++E+ F I CK+ N M+ + +++S+ WCGISG+ LG L P+SSL L +++ GL SI G+R+ D + +++DDI Q+ V ++
Sbjct: 7 KQEHLLALKVMRLTKPTLFTNIPVTCEEKDLPGDLFNQLMRDDPSTVNGAEVLMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKADLQTSSQRLNLSASNAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYTTQAGEKMYFRKFFKFQVLKPLDVKTKFYNAESDLSSVTDEVFLEAQIQNMTTSPMFMEKVSLEPSIMYNVTELNSVSQAGE-----CVSTFGSRAYLQPMDTRQYLYCLKPKNEFAEKAGIIKGVTVIGKLDIVWKTNLGERGRLQTSQLQRMAPGYGDVRLSLEAIPDTVNLEEPFHITCKITNCSERTMDL-VLEMCNTNSIHWCGISGRQLGKLHPSSSLCLALTLLSSVQGLQSISGLRLTDTFLKRTYEYDDIAQVCVVSS 411 The following BLAST results are available for this feature:
BLAST of TCONS_00026352 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.