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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026371 ID=TCONS_00026371|Name=TCONS_00026371|organism=Clytia hemisphaerica|type=transcript|length=2460bpRun BLAST on NCBI protein sequence of TCONS_00026371-protein >TCONS_00026371-protein ID=TCONS_00026371-protein|Name=TCONS_00026371-protein|organism=Clytia hemisphaerica|type=polypeptide|length=722bp MKNTTKTKGETRRRSSRGSISDDPVPTKTAKVDDLKKISENLKTELKKTERun BLAST on NCBI transcript from alignment at sc0000570:25696..47230+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026371 ID=TCONS_00026371|Name=TCONS_00026371|organism=Clytia hemisphaerica|type=transcript|length=21535bp|location=Sequence derived from alignment at sc0000570:25696..47230+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000570:25696..47230+ >TCONS_00026371 ID=TCONS_00026371|Name=TCONS_00026371|organism=Clytia hemisphaerica|type=CDS|length=43380bp|location=Sequence derived from alignment at sc0000570:25696..47230+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00026371 vs. Swiss-Prot (Human)
Match: THOC5 (THO complex subunit 5 homolog OS=Homo sapiens GN=THOC5 PE=1 SV=2) HSP 1 Score: 327.405 bits (838), Expect = 1.374e-99 Identity = 228/659 (34.60%), Postives = 367/659 (55.69%), Query Frame = 1
Query: 250 EETEAETRDSARDVTEFQNTCTSIEERLSKINELKKEDNETNKELIVNERIEAXXXXXXXXXXXXXXQVRGKIAKEKTQEVKKKVDGLHLDLQNLLYELMHVKKEIQKCMNFSSKXXXXXXXXXXKFYEEAPESVSQPAITKENPHQQMLARLDFEMKKRKELNVSKSEFVEQKKKTEVEINQKADYLSNLKPRLEQILKASRPVQEYMNIPFEAEAILQEKAQFLARPLYVLYIQAKAYKEVCDENLEMDIEGDLMEAKSLFFSDDVTEDNDALSDISDTETEAEIDENRGGSSRKHAKKDKERLKEQQNKLLQSHPLKISLTIQEKDAFKVQLTFHHYPALKINAINVQVTL-LSKYESFAKSPLLSSQNILQDLCCLDTGKTSPNSANTYQMERLKLSAFENHISKLGLPYFWVQWICGLNYLPNEEITCSLPDAAVSVKHFQKVVRAIKSRVRSRLSLHEQVSSLERLSIREPQSESMKNILPKKRLLSMLSSWTDASYEDLQNFEEHKMLEDLNVVNEDCILYKAAFTRDEV-IKVLVVVHTNYPKQTPLLLLSYKDQRNRVNHNAD-LKCLESEVNSYAEELLEHGHSNDILSNMLLRLQYCFDIFCET--------GPSSDTKERLXXXXXXXXXXXXXXXXNPDGGYFLQR 2193
EE E + RD RD ++ TC ++ +++I +LK + I RI++ + LKKLNRL +R K +++T E K+KVD HL LQNLLYE+MH++KEI KC+ F SK EE+DLV L++FY+EAP +S+ +T +PHQQ LARLD+E+++RK L E + K+K EI K +YLS+L+PRL I++AS PVQEY+ +PF+ E A+ L PLYVL++QA AY + CD+ L + IEG + EAK+LF + ++D+++ SD + +T G +L +++ ++L+ HPL + L ++ KD + LTF++ L I + +VT + + LLS ++L L D GK +PN AN YQ +++ + +++ +LG PY WVQ + GL++ + + D ++S H + ++ +K+RV+SRL+LH+Q +SLE + P + + + P K ++S L W ++ED K + D + + + Y A R ++ VV++ Y P+ L + + N N D ++ +E EVN +EL S+ +L+N L RL D++ ET GP +E++ R RG R +P++YN G+F R
Sbjct: 39 EEAEVDLRDPGRDYELYKYTCQELQRLMAEIQDLKSRGGKDVAIEIEERRIQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAKQKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIDLVSLEEFYKEAPPDISKAEVTMGDPHQQTLARLDWELEQRKRLAEKYRECLSNKEKILKEIEVKKEYLSSLQPRLNSIMQASLPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQATAYGQACDKTLSVAIEGSVDEAKALFKPPEDSQDDESDSDAEEEQTTKRRRPTLG-----------VQLDDKRKEMLKRHPLSVMLDLKCKDDSVLHLTFYYLMNLNIMTVKAKVTTAMELITPISAGDLLSPDSVLSCLYPGDHGKKTPNPANQYQFDKVGILTLSDYVLELGHPYLWVQKLGGLHFPKEQPQQTVIADHSLSASHMETTMKLLKTRVQSRLALHKQFASLEHGIV--PVTSDCQYLFPAK-VVSRLVKWVTVAHEDYMELHFTKDIVDAGLAGDTNLYYMALIERGTAKLQAAVVLNPGYSSIPPVFQLCLNWKGEKTNSNDDNIRAMEGEVNVCYKELCGPWPSHQLLTNQLQRLCVLLDVYLETESHDDSVEGPKEFPQEKMCLRLFRGPSRMKPFKYNHPQGFFSHR 683 The following BLAST results are available for this feature:
BLAST of TCONS_00026371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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