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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026372 ID=TCONS_00026372|Name=TCONS_00026372|organism=Clytia hemisphaerica|type=transcript|length=2735bpRun BLAST on NCBI transcript from alignment at sc0000570:25696..47230+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026372 ID=TCONS_00026372|Name=TCONS_00026372|organism=Clytia hemisphaerica|type=transcript|length=21535bp|location=Sequence derived from alignment at sc0000570:25696..47230+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00026372 vs. Swiss-Prot (Human)
Match: THOC5 (THO complex subunit 5 homolog OS=Homo sapiens GN=THOC5 PE=1 SV=2) HSP 1 Score: 214.927 bits (546), Expect = 6.126e-59 Identity = 141/353 (39.94%), Postives = 216/353 (61.19%), Query Frame = 1
Query: 250 EETEAETRDSARDVTEFQNTCTSIEERLSKINELKKEDNETNKELIVNERIEAXXXXXXXXXXXXXXQVRGKIAKEKTQEVKKKVDGLHLDLQNLLYELMHVKKEIQKCMNFSSKXXXXXXXXXXKFYEEAPESVSQPAITKENPHQQMLARLDFEMKKRKELNVSKSEFVEQKKKTEVEINQKADYLSNLKPRLEQILKASRPVQEYMNIPFEAEAILQEKAQFLARPLYVLYIQAKAYKEVCDENLEMDIEGDLMEAKSLFFSDDVTEDNDALSDISDTETEAEIDENRGGSSRKHAKKDKERLKEQQNKLLQSHPLKISLTIQEKDAFKVQLTFHHYPALKINAINVQVT 1308
EE E + RD RD ++ TC ++ +++I +LK + I RI++ + LKKLNRL +R K +++T E K+KVD HL LQNLLYE+MH++KEI KC+ F SK EE+DLV L++FY+EAP +S+ +T +PHQQ LARLD+E+++RK L E + K+K EI K +YLS+L+PRL I++AS PVQEY+ +PF+ E A+ L PLYVL++QA AY + CD+ L + IEG + EAK+LF + ++D+++ SD + +T G +L +++ ++L+ HPL + L ++ KD + LTF++ L I + +VT
Sbjct: 39 EEAEVDLRDPGRDYELYKYTCQELQRLMAEIQDLKSRGGKDVAIEIEERRIQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAKQKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIDLVSLEEFYKEAPPDISKAEVTMGDPHQQTLARLDWELEQRKRLAEKYRECLSNKEKILKEIEVKKEYLSSLQPRLNSIMQASLPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQATAYGQACDKTLSVAIEGSVDEAKALFKPPEDSQDDESDSDAEEEQTTKRRRPTLG-----------VQLDDKRKEMLKRHPLSVMLDLKCKDDSVLHLTFYYLMNLNIMTVKAKVT 380 HSP 2 Score: 119.783 bits (299), Expect = 1.068e-27 Identity = 76/257 (29.57%), Postives = 132/257 (51.36%), Query Frame = 3
Query: 1620 LLSSQNILQDLCCLDTGKTSPNSANTYQMERLKLSAFENHISKLGLPYFWVQWICGLNYLPNEEITCSLPDAAVSVKHFQKVVRAIKSRVRSRLSLHEQVSSLERLSIREPQSESMKNILPKKRLLSMLSSWTDASYEDLQNFEEHKMLEDLNVVNEDCILYKAAFTRDEV-IKVLVVVHTNYPKQTPLLLLSYKDQRNRVNHNAD-LKCLESEVNSYAEELLEHGHSNDILSNMLLRLQYCFDIFCETGPSSDTKE 2384
LLS ++L L D GK +PN AN YQ +++ + +++ +LG PY WVQ + GL++ + + D ++S H + ++ +K+RV+SRL+LH+Q +SLE + P + + + P K ++S L W ++ED K + D + + + Y A R ++ VV++ Y P+ L + + N N D ++ +E EVN +EL S+ +L+N L RL D++ ET D+ E
Sbjct: 394 LLSPDSVLSCLYPGDHGKKTPNPANQYQFDKVGILTLSDYVLELGHPYLWVQKLGGLHFPKEQPQQTVIADHSLSASHMETTMKLLKTRVQSRLALHKQFASLEHGIV--PVTSDCQYLFPAK-VVSRLVKWVTVAHEDYMELHFTKDIVDAGLAGDTNLYYMALIERGTAKLQAAVVLNPGYSSIPPVFQLCLNWKGEKTNSNDDNIRAMEGEVNVCYKELCGPWPSHQLLTNQLQRLCVLLDVYLETESHDDSVE 647 The following BLAST results are available for this feature:
BLAST of TCONS_00026372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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