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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026406 ID=TCONS_00026406|Name=TCONS_00026406|organism=Clytia hemisphaerica|type=transcript|length=2086bpRun BLAST on NCBI protein sequence of TCONS_00026406-protein >TCONS_00026406-protein ID=TCONS_00026406-protein|Name=TCONS_00026406-protein|organism=Clytia hemisphaerica|type=polypeptide|length=512bp MFRNMAAETLKNYRKLDIFAKHKIPPTLLNEVVESAKDWAISHGLVMKFKRun BLAST on NCBI transcript from alignment at sc0000571:10065..53780+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026406 ID=TCONS_00026406|Name=TCONS_00026406|organism=Clytia hemisphaerica|type=transcript|length=43716bp|location=Sequence derived from alignment at sc0000571:10065..53780+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000571:10065..53780+ >TCONS_00026406 ID=TCONS_00026406|Name=TCONS_00026406|organism=Clytia hemisphaerica|type=CDS|length=23085bp|location=Sequence derived from alignment at sc0000571:10065..53780+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026406 vs. Swiss-Prot (Human)
Match: GSHB (Glutathione synthetase OS=Homo sapiens GN=GSS PE=1 SV=1) HSP 1 Score: 332.798 bits (852), Expect = 2.366e-105 Identity = 196/462 (42.42%), Postives = 281/462 (60.82%), Query Frame = 1
Query: 232 LNEVVESAKDWAISHGLVMKFKENPTLSK---HAPFVLFPSPFPTYLYNEAFQVQKDFQTLFHRASLDHEFIKDSLKSVIIHDEFTKLQYDLYEIVRQEGIKPKIYFDIARSDYMIDQVKTEYDSSKPLTEERPYEIKQIEMNMIAAXXXXXXXXXXXLHRYIASELEEHSPFNKEKVSMRVPINGLGEGMAQAFELYGNENAVVLFIIETIDLNRFDQKQLTYAFHEGCQKLGLKKRVRCLFRTFEQVAQNGKLDGDRRLILENKEVAITYFRTGYTPCGLSTEERIGCRLMMERSRSIKCPTIAMQLINTKKVQQVLAKPGMVEKFIHDE-NAVQRIRKTFAGLYSLDEGLEGDQIIEDALKAPSNFVLKPQREGGGNNLYDQEMVDELRRISNDPEERSQYILMERIRPPVVHSYIVRPESLNPMESEIVSELGILGVIMSDGDDIIQNESCGHLLKSK 1605
L E+ A D A++ G++++ + PT S+ +APF LFPS P+ L +A+ VQ DF L S + F++ +L S I D+FT +D+++ V +EGI ++ + RSDYM + D S L KQIE+N I+ASF GL+S P++HR++ S L + K+ P GL G+A+A+ELYG+ NA+VL I + + N FDQ+ + L + + + RTFE +++ G LD DRRL ++ +E+A+ YFR GY P S + RL++ERS + KCP IA QL TKKVQQ L++PGM+E + + AV R+R TFAGLYSLD G EGDQ I +AL APS FVLKPQREGGGNNLY +EMV L+++ D EER+ YILME+I P + ++RP S + + +SELGI GV + ++ N+ GHLL++K
Sbjct: 15 LEELARQAVDRALAEGVLLRTSQEPTSSEVVSYAPFTLFPSLVPSALLEQAYAVQMDFNLLVDAVSQNAAFLEQTLSSTIKQDDFTARLFDIHKQVLKEGIAQTVFLGLNRSDYMFQR---SADGSPAL--------KQIEINTISASFGGLASRTPAVHRHVLSVLSKTK--EAGKILSNNPSKGLALGIAKAWELYGSPNALVLLIAQEKERNIFDQRAIENEL--------LARNIHVIRRTFEDISEKGSLDQDRRLFVDGQEIAVVYFRDGYMPRQYSLQN-WEARLLLERSHAAKCPDIATQLAGTKKVQQELSRPGMLEMLLPGQPEAVARLRATFAGLYSLDVGEEGDQAIAEALAAPSRFVLKPQREGGGNNLYGEEMVQALKQL-KDSEERASYILMEKIEPEPFENCLLRPGSPARV-VQCISELGIFGVYVRQEKTLVMNKHVGHLLRTK 452 The following BLAST results are available for this feature:
BLAST of TCONS_00026406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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