TCONS_00026648 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026648
Unique NameTCONS_00026648
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1140

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026648 ID=TCONS_00026648|Name=TCONS_00026648|organism=Clytia hemisphaerica|type=transcript|length=1140bp
CTTCATATATTGTTCTTTAGGAAGGTAATTCAATTTCTAGGCAATAAAGT
ACCAATCAGAGATATCTAAACAAAGTTCAAAAGTATCAATATCGTCAAAG
TCATTTTAAATTTGAGCATACCAATATGAATCTCAATCATCTTTATATCC
TCCTCATCAATTTGATGACATTGCATCTTGCATCGACCGTTTTCGTATCT
ACTTTTCGATCGAAGCCCGACGCTTGCCGATCAATGGTTTGCCCGATCGG
GCATAAATGCGTAAGCTCGGGAGAAGTTGCCGATTGCGTTTGCGATCATC
AATGTTCCCAAACAAAAGACACTGGTCCAGTTTGTGCTGATGGAAAAACG
TATAAGAATTTGTGTCAATTGAATATGAAAGTTTGTcaagaacaaagaaa
tatatTGGTTCAACATTATGGGAAATGTAGACAATGCGCAGACGCCGAGC
GTGAATCAAAAAATGGCTTGTGTAAAATGTGGCAGAAGATGAGATTGTGT
GAAATCAGACCAAAAATTATGAGCATTTACTGCAAGAAGACTTGTGGATA
TTGTAAATTGGATGCACCAGCACGTCACAGATGCGGACGACAAGTTCTTT
CTTCATTTGGATGCAGTAAAAAATGTCACGACCTTCGTTTCTGTAAACAT
TTCGCAAATTCATGTGGTGATGTTTTGAATCAAGGAATTATGAAATTACA
TTGTCCTCAAAGGTGTGGATATTGTGTGACACAAATTCTTCCCACATTCA
ACGTACCCTACAAACAGTAAAGAAAATCGGACTAATGCTGAAACTTCGAT
AATTCAAAATGGTGAAAGGAGACCTGAAACAGATGGAAAAGCACATGGTT
GTGAGACTAATCACAATAGCAACAAAATTGTTGCCGGGGGTAACGGTGAC
GTTGCTGAAAGTCGGTTTCCCGCCAATTGTTGGGAATCATCATTAATATT
TTGAACAATTACCTGCagaaaggagaaaaacaatGTAAATACTGAATTTA
ATAAGACGGTGAAAATGATGTTGGATATATGCAAACCTCTTAAACACCAC
AATGTCTATACTGCTGCGAATTAGAATATCAGACAATATCAAACATTTCT
TCGGGACACCGTGTCTAGTTGAACTGAATATATACTACAT
Run BLAST on NCBI

transcript from alignment at sc0000580:160146..167701-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026648 ID=TCONS_00026648|Name=TCONS_00026648|organism=Clytia hemisphaerica|type=transcript|length=7556bp|location=Sequence derived from alignment at sc0000580:160146..167701- (Clytia hemisphaerica)
CTTCATATATTGTTCTTTAGGAAGGTAATTCAATTTCTAGGCAATAAAGT
ACCAATCAGAGATATCTAAACAAAGTTCAAAAGTATCAATATCGTCAAAG
TCATTTTAAATTTGAGCATACCAATATGAATCTCAATCATCTTTATATCC
TCCTCATCAATTTGATGACATTGCATCTTGCATCGACCGTTTTCGTATCT
ACTTTTCGATCGAAGCCCGACGCTTGCCGATCAATGGTTTGCCCGATCGG
GCATAAATGCGTAAGCTCGGGAGAAGTTGCCGATTGCGTTTGCGATCATC
AATGTTCCCAAACAAAAGACACTGGTCCAGTTTGTGCTGATGGAAAAACG
TATAAGAATTTGTGTCAATTGAATATGAAAGTTTGTCAAGAACAAAGAAA
TATATTGGTTCAACATTATGGGAAATGTAGTAAGTAAATTTCTCAAACTC
GAATACAGTCCCTTTACCACGGGGGTACTAGGGTTGTGAGCTGACGGGGA
GGGGGGTCTTTTGATCATCGGACCCTTACCGGAACTAAAAAGGAGAAAAC
AAAGGAAAATTTTGTGAATTTTACGACGAGTTTTACGACCCTTACCGGGA
CAAATTTGACCAAATTTCGATCTTTCTTGGGGTAAAAAGTTGAAATTTTC
CTATTTCTCCTACCCTTAGTGGGACTGAAATTTGATTTTCTGATTTTTCC
GACCCTTAGCGGAACTTCAATCCAAAAAATGTACCCTTAAGGGCGGCACA
TACCGTACCCTCCATTTGCCTTAGTACCTTCGGGCCCTTTACTCACTTTT
CGGATAGCTTACGAAAGATTGTATCACGTCTATCAGTAAAATCAAAAAGT
GATGCAAGTGACTCTTGGTACGAGATTGTAAATTCTAACTTAGCCTGCAC
CAAATTTTCCTTTACAGAAACGAAAGACACAGTTCAGGCTGTTAAGATAT
CTGAATGCTTCAAAAATTTTGGATGTTCTCATAAAAAACGTGTACCTTTG
AGACGTATCTAATCCCAGGGAAGACATTGCATAGATACCTGAAAAATAAA
AATTATGGTATTTCTTCTTCTTCTTGGAATGAAAAACTAACTTCGACTTT
TCAATTATAACAGGACAATGCGCAGACGCCGAGCGTGAATCAAAAAATGG
CTTGTGTAAAATGTGGCAGAAGATGAGATTGTGTGAAATCAGACCAAAAA
TTATGAGCATTTACTGCAAGAAGACTTGTGGATATTGTAGTAAGTTATTA
TTATGTTGTTGACGGCAAGAGGTTCTAGATCCATTTGTGTTCTAAAATTC
TTGCTCCGAGGTACATTTTGTACTAGAATTGATACAGCAACTTTGAAAAA
TCCCAACAAAATCAAAGCTACTACAAGCTTGTTAGGCCTGTAGATTTATA
AAAGACATGGTTATCGAACTTCTAATCACAACATTGTCCGACGGGACGAG
GTCTAGTTAGGATCTGAACTCTTGAGTCAATGTCATAGAAACTCAAACAC
AGACTCATATTCATTCATATTATGATTTGATTTTAAGCTTAAAATTTCAA
GATGAAATTTTTTCTCTTCCCTCCTCTTAGCAACAAAGTTGTGGTTCCTA
AAAGTTAGAAAAAAACATGATTCGAAATGTAACAATTCCCACCGTAATAT
TTGGCGCAAAAGGGGAATTCTCTCAAAATTTGAAAACCGCAAGTGCTTTA
AAGTACGGTTGAGTTTTAGCTCTGAGTTTTTAACATGAGATTTAATTTAG
AAATTAGGATCTCAGGATCTAAAAGCTCAAAAATGTTCCAATAAGGCTGA
GAATATAGCCTTGAAGCCAAAAACCGAATGAAACAAAGTGGAAGTACTAA
AATCGAAATTCTCGTCCGAGCTTTAAATTCTGACAAATATTAAAACACTC
AAAAATGTCAATACATGTCAGTGTTGATTGAATGCATGCTGAGTATTTAG
GCTGACATGAACAAATATTGGAATTTCGTTTCTTCTTCTCTCGTTTAGAA
TTGGATGCACCAGCACGTCACAGATGCGGACGACAAGTTCTTTCTTCATT
TGGATGCAGTAAAAGTAAGAACATTTATTCTCAAGAAGTAACAAACCATA
TAAGAATATGAGACTTGGCAAAATATTAAGAACAAGTTAGTAAAATATTT
AGGATTTTTAGATTCTAAAACCCCAATTTCTTAAGAAATTGCACAAAAAT
ACTCAGAAAAAGGTGAAAATAAGAATATCTCCATAACATTTTCAGGCTGA
AAACTCAAAAAGGATGTCCTTATAAAAAACTGTAAATGTATTTTAACATC
CAATTTTTGTTCCACATTTTTAGAATGTCACGACCTTCGTTTCTGTAAAC
ATTTCGCAAATTCATGTGGTGATGTTTTGAATCAAGGAATTATGAAATTA
CATTGTCCTCAAAGGTGTGGATATTGTGGTAAGTTGCGTTTGAACGTAGT
TTGAGCCTCTTCTTTTACGTCAGATTTTACTCCCCGGACTAAGGATCGAA
AGACATTTTTAAGATTCTACATTCTAGACTAAGGGTCCAAAAACCTTTCT
AATATTTCACTCTCCGTGCGAAGGCTCCAAAGACCTTTGTAATATTCCAC
TTACCTGGCGATGGTTCCAATGATTTTCCGAAAAAGATTCCTATCCCGGA
CTTAGCTTTCAAGGACTTTTCTGGGGATAACAATATTTTAAAAGAGCCCT
TCACGGGGGGGGGGGGAGGTTCTAGGGGTACCCGATTCCACAATTCCGTC
AATCTTTTGTCCAATGACCGTCACACCGTGAAAATAAAGACTGAATTTCA
ATCAATGAAAATTTCTCTGAAATTGAAAATTCCGGAATTTTGACTTTTTG
GTGTCAATTCCAAAATTCCAGCCCATTTTCCGTCTCCGGCAGCGGACCTA
AATTCCGCAAATCCGTCCAAACTTTTGACGTATTCCGCGATTCCATACGA
AAAGAAAGAACATTTCCACCACTTCGTTAACCTTGATAACCCTCCCTTCA
AATTTTTGTTTAGATAATCTAACCCAAGCAAACGAAAGCCCTTCACCAAA
TAAGCATATATAGTATAATGTCAGTAGTTGTCAAAGCAAATCTTTCAAAA
AATGAGCAATAATGCTAAACCCCAGAACTGATCTGAAAATCTGAGTTAAT
AAAAAAAATTGTATTCTTTTCTTTTACAGTGACACAAATTCTTCCCACAT
TCAACGTACCCTACAAACAGTAAAGAAACTCTGACTAATGCTGAAGCTTG
AAAAAAAAACACAAAAATTCAAAATGGTAAAAGGAGACCTGAAACAGATG
GAAAAGCACATGGTTGTGCGTGATACTAATCACAATAGCAATAAAATTGT
TGCCGGGGGTAACGGTGACGTTGCTGAAAGTCGTTTTTCCCGCCAATTGT
TGGGAATCATCATTTATATTTTGAACAATTACCTGCAGAAAGGAGAAACA
ATGTAAATATTGAATTTAGAAAGGCGGTGAAAATGATGTTGGATATATGC
AAACCTCTTAAACACCACAATGTCTATACTGCTGCGAATTAGAATATCAG
ACAATATCAAACATTTCTTCGGGACACCGTGTCTAGTTGAACTGAATATA
TACTAGCTGGCACATAACGTCACACACCCTTCTCACAGACCCGGTACCCA
GTGGATCTGTGAGAGGGGGTGTATTGTCTAATGTTCACAACGTCCATAAA
ACGTTAGATGAACATTGAAACAACGTTGTGTGTTAGGTGGGCTCAAACTT
TTGAATGTATGTTTAATATCATACATCAGTTTTTTAAAGGACTAGGATCT
AGTTGTGTTCGTCAAAATAATATGTTTCAAAAACAACTTACCTCAATGAA
GTAAATCATTTCTTAGGTTTTATTCGTTTGAAATATTTTCAGTTTTTTTC
CGGACAAACTGCATAGCCCGCGAAGAAAAAATGTTTCATTGACACAACTA
AAACCTAGACCTAGAAATGTGAAACGCATTCTCTACTTTCAAAATGTTAA
TTCTACTAGTTTTAGATATTTTTTACTTATTTAACGAAACCATTTTATAT
ATCATATACATAAAGTCGTGTAAAACTAAAATTAAATTTTGTAAATATAT
TATGAAAATAAAACTCTCTTGAATATAGTTCTGATAATTGAAATTTTAAT
TTTTCCTTCCCAGGCCTTTTCCTTTGTCTTGGATACACGCAAAAGTAGTT
TGTACACAGACTCGATTTCTTCGGCTAATTTTAAAATTCATTGTCGTAGA
GGTACTACCAACGATATACGTGAGTGAGATCTCTGGTACAGACTACACGC
TTTTTATATTTATAAGAATGGTGTAAATCCATTTCATCATGGATATTCTT
AACTTTTTTGGGAAAATCATCCTAAAATATTCTTACAGCATTCTTACGTT
AAGATCCTAATTGACAATTTATAATTTAAAATTGTCTAAAAATAGCATTC
TTAGCTTGAGTAGCAAAATTCTATGATGTGATATTCTTAGCATATTCTTA
ATTGTTGGCCATTTTCATCATGGACATTCTTATAAAGTGTATTCTTATAA
AAAATAGCATTAGTCAGGAGGAGACACTGAAGAGAATATGGGTGCGGAAT
AGCCTGGAAATATAAGCCAGTTTGATTGAGCCATTAGGATAAATCTAATG
GTCATATACCTTATCGGCCCTTTTTTTCGCCGGCCCTTATTGGCGTTATT
TTTAGGCTCGTGGCGTAATAAGAGCCGGTGTTAAAAGGGCCGGACCCATA
TTCATTCATATTATGATTTGATTTTAAGCTTTCAAATTTCAAGATGAAAA
GTTTTCTCTTCCCTCGAAATGGAACAATGCCCACCGTAATATTTGGCGCA
AAAAGGGAATTCTCTAAAAATCTGAAAACCGCAAGTGCTTTAAAGTACGG
TCGAGTTTTAACTCTGAGTTTTTAACATGAGATTTAATTTAAACATTAGG
ATCTCAGGATTTAAAAGCTCAAAAATGTTCCAATAAGGCTGAGAATATAG
CCTTGAAGCCACTTAAAGAAAAACCGAACGAAACAAAGTGGAAGTACTAA
AATCGAAATTTTTGTCCGAGCTTTAAATTCTGACAAATATTAAAATTACT
CGAAAGTGTCAATACATGTCAGTGTTGATTGAATGTATGCTGAGTATTTT
GGCTGACATGAAGAAATAGTGGAATTTAATTTCTTCTCTCGTTTAGAATT
GGATGCACCAGCACGTCACAGATGCGGACGNGGCTGACATGAACAAATAT
TGGAATTTCGTTTCTTCTTCTCTCGTTTAGAATTGGATGCACCAGCACGT
CACAGATGCGGACGACAAGTTCTTTCTTCATTTGGATGCAGTAAAAGTAA
GAACATTTATTCTCAAGAAATGACCAAATGATATTTCTATTATATGGAAC
CCCTTTACACGTCTTTTATAAGAACAAACTATAGAAGAACATAAGGCTTT
CGTTGCCAAATTATTAAGAGGTAAAAACATATTAAGGATTTGCGCACTCT
AAAACCCGCCAATTTCTTAGGAAATTGCACAAAAATACTCAGAAAAAGGT
GGAAATAAGAACATTTCCATAACATTTTCAGGCTGAAAACTCAAAAAGGA
TATCCTTATAAAAAACTGTAAATGTATTTTAACATCCAATTTTTGTTCCA
CATTTTTAGAATGTCACGACCTTCGTTTCTGTAAACATTTCGCAAATTCA
TGTGGTGATGTTTTGAATCAAGGAATTATGAAATTACATTGTCCTCAAAG
GTGTGGATATTGTGGTAAGTTGCGTTTGAACGTATTTTGAACCTCTTCTT
TTACGTCCGATTTTACTCCCCGGACTAAGGATCGAAAGACCTNCTTTGTC
TTGGATACACGCAAAAGTAGTTTGTACACAGACTCGATTTCTTCGGCTAA
TTTTAAAATTCATTGTCGTAGAGGTACTACGAACGATATACGTGAGTGAG
ATCTCTGGTACAGACTACACGCTTTTTTTATGAGAATGGTGTAAATCCAT
TTCATCATGGATATTCTTAACTTTTTTGGGAAAATCATCCTAAAATATTC
TTACAGCATTCTTACGTTAAGATCCTTATTGACAATTTATAATTTAAAAT
GGTCTAAAAATAGCATTCTTAGCTTGAGTAGCAAAATTCTATGATGTGAT
ATTCTTAGCATATTCTTAATTGTTGGCCATTTTCATCATGGACATTCTTA
TAAAGTGTATTCTTATAAAAAAAAAGCATGTAGTCAGGAGGAGACACTGN
GGGGTACCCGATTCCGCGATTCCGTCAATCTTTTGTCCAATGACCGTCAC
ACCGTGAAAATAAAGACTGAATTTCAATCAATGAAAATTTCTCTGAAATT
AACCTAAATTGATTGCGGACCTAAATTCCACAAATCCGTCCAAACTTTTG
ACGTATTCCGCGATTCCATACGAAAAAAGAGCACATTTCCGCCAATCCGA
TAACCTCCGATAACTATCTCGTAAATTTAATTTCTGTTTAGTTGATCTAA
CCAAAGCAAACGAAAGCCCTTCACTAGTCTAGCAAGCTAGACGACTAATT
TATACATAGTAGAAATAAAGCAAAAAGTAATGAATGGAACAATTTTAGTC
GTCTAGAAACCTTTGTGCACTANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGTTTCTGCGTAGCTAGCCCCTGTA
TCTATAAGGCTGGAACACCGGATTCTTCCAGTCGTTTATACAAACTAAAT
CCCGTATTATTATTATTAGTATTACACGCGTTATAAACGACTCCAGTCTA
GCCCTTCACCAAATAAGCATATATAGTATAATGTCAGGAATTGTCAAAGC
AAATCTTTCAAAAAATGAGCTAGAATGCTAAACCCCAGAACTGATCTGAA
AATCTAAGTTAATAAAAAAAATTGTATTCTTTTCTTTTACAGTGACACAA
ATTCTTCCCACATTCAACGTACCCTACAAACAGTAAAGAAAATCGGACTA
ATGCTGAAACTTCGATAATTCAAAATGGTGAAAGGAGACCTGAAACAGAT
GGAAAAGCACATGGTTGTGAGACTAATCACAATAGCAACAAAATTGTTGC
CGGGGGTAACGGTGACGTTGCTGAAAGTCGGTTTCCCGCCAATTGTTGGG
AATCATCATTAATATTTTGAACAATTACCTGCAGAAAGGAGAAAAACAAT
GTAAATACTGAATTTAATAAGACGGTGAAAATGATGTTGGATATATGCAA
ACCTCTTAAACACCACAATGTCTATACTGCTGCGAATTAGAATATCAGAC
AATATCAAACATTTCTTCGGGACACCGTGTCTAGTTGAACTGAATATATA
CTACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014998XLOC_014998Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026648-exon-sc0000580-1575043694:167273..167701TCONS_00026648-exon-sc0000580-1575043694:167273..167701Clytia hemisphaericaexon
TCONS_00026648-exon-sc0000580-1575043694:166463..166588TCONS_00026648-exon-sc0000580-1575043694:166463..166588Clytia hemisphaericaexon
TCONS_00026648-exon-sc0000580-1575043694:165638..165703TCONS_00026648-exon-sc0000580-1575043694:165638..165703Clytia hemisphaericaexon
TCONS_00026648-exon-sc0000580-1575043694:161938..162042TCONS_00026648-exon-sc0000580-1575043694:161938..162042Clytia hemisphaericaexon
TCONS_00026648-exon-sc0000580-1575043694:160146..160559TCONS_00026648-exon-sc0000580-1575043694:160146..160559Clytia hemisphaericaexon
TCONS_00026648-exon-sc0000580-1510915933:167273..167701TCONS_00026648-exon-sc0000580-1510915933:167273..167701Clytia hemisphaericaexon
TCONS_00026648-exon-sc0000580-1510915933:166463..166588TCONS_00026648-exon-sc0000580-1510915933:166463..166588Clytia hemisphaericaexon
TCONS_00026648-exon-sc0000580-1510915933:165638..165703TCONS_00026648-exon-sc0000580-1510915933:165638..165703Clytia hemisphaericaexon
TCONS_00026648-exon-sc0000580-1510915933:161938..162042TCONS_00026648-exon-sc0000580-1510915933:161938..162042Clytia hemisphaericaexon
TCONS_00026648-exon-sc0000580-1510915933:160146..160559TCONS_00026648-exon-sc0000580-1510915933:160146..160559Clytia hemisphaericaexon
TCONS_00026648-exon-sc0000580-1491911889:167273..167701TCONS_00026648-exon-sc0000580-1491911889:167273..167701Clytia hemisphaericaexon
TCONS_00026648-exon-sc0000580-1491911889:166463..166588TCONS_00026648-exon-sc0000580-1491911889:166463..166588Clytia hemisphaericaexon
TCONS_00026648-exon-sc0000580-1491911889:165638..165703TCONS_00026648-exon-sc0000580-1491911889:165638..165703Clytia hemisphaericaexon
TCONS_00026648-exon-sc0000580-1491911889:161938..162042TCONS_00026648-exon-sc0000580-1491911889:161938..162042Clytia hemisphaericaexon
TCONS_00026648-exon-sc0000580-1491911889:160146..160559TCONS_00026648-exon-sc0000580-1491911889:160146..160559Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000580supercontigsc0000580:160146..167701 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.00588574	0.714922	6.10982e-07	0.272159	0	0.162521	0.306938	0.433532	0.189605	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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