TCONS_00026709 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026709
Unique NameTCONS_00026709
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026709 ID=TCONS_00026709|Name=TCONS_00026709|organism=Clytia hemisphaerica|type=transcript|length=1569bp
CTGGGTTACtgagaaaaaatcgaaaaaattcgTAAACAAATCAAGATGGC
TGCCAACATCGACCTTGACAAAATTAGTGGAGAAATTGAGAATGCTCTTA
CAACCGATATATCTGAAGAGAATAAATCAAAGCTTTCCAAAATAAAAGAC
TGGTTTAAAGAGAGAAGATCAGAGGTCAAACCATGGGGTGAATTTTTTAA
TACCAGGAAGTTTGTAAGACCAAGTAATGCTTCCGAGGCAACATCAAGAC
TCGTTTCAAATGTTCGAGTTTATCAAGCAAATTACATCATGATTTGCATG
TTAATGACGTTTTACTGTATATTAACTTCACCTCTTTTGTTGATTGGACT
TACTATGAGTGTTGGTGGATGTTTATACATTTCAACAAAAGGACAAGGAA
AAACTATTAAGCTTTTTGGAAAAGAGTTCAGCACAATACAACAATATGGA
CTAGTCTTTTTGATTTGCATGCCCTTATTCTTCTTTGCGTCAGCAGGGTC
CACAGTGTTTTGGATCATAGGTGCATCAATGGTTATTATTGGTGCTCACG
CAGTGATGCTCTCAGCCTCAACAACTCCAACTGCTCTGGATATGGAAATG
GAAGGAGTggaaacaatgaaataaatctTCACAATTTTATTAGCGTTTGT
CGCTTTATACTTGCACAGAATTATTCATACACAATCTTGGATCTAAGAAG
TTACAGAAATGTTTACCCAATTTCTTAAACCAactatttgttttgatttt
gtatttaaTCAGTTTTGTATACTAACATTTTCATTGTACTGGTAGTTTCA
TTCTAGATGATCTTTTTTTATAGTTGTATTGaggaatttatttatttgat
gaTGTCTGATATTTTATAGTTTTGAATCAGATGTTCGTATTTTATCTTCT
TTTGCTTACAGCTGACgtgatataatttttttaaattatgtttgGCTTGA
GACCAGGCTGCACACACCCCCTCttatatgttttgatatagggcgCTGCG
tgtatcgtgtatgaaattcctgtccgagagttacccccgtctttgtgttt
ttgagtttaaaaactTGATTAGCTTGTTTGTAAGTTTTATGTGATAGACc
gaatttcattaaattttaatCATAAATTTGAATGGCTAGAAGTTTATAAA
TCGTTGGATTTCTGaagctttttaagaaaattaaaaaataaagttacccc
aaatttgaagtaactctcggacgagaatttcatactcgatacgcatcccc
tatatcaaaatcaattctggATATGCACGCTGTCTAGCTTGAGTCCTTGA
GGCACGTACCATTTTCTTTAATGAATAACATACAGGTATTATAGATTTCA
CAGGCCTTGGAATGAGATCAATTCAATCAAGAAGTCgaggaatcttttca
aaatattctcatACATTCTTCATTTATTTTCCTAACTCTACACGCCATTA
TAATTAAAATACTTCTATCTTATAAATAATTGTTGTAATTACAAACATTT
ATTAACACCGTTATCAATATATTATACAATTATACTCCTTGAAAGAAAGA
ATTTTATGGTGTTCTGGAC
Run BLAST on NCBI

transcript from alignment at sc0000581:211067..216759-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026709 ID=TCONS_00026709|Name=TCONS_00026709|organism=Clytia hemisphaerica|type=transcript|length=5693bp|location=Sequence derived from alignment at sc0000581:211067..216759- (Clytia hemisphaerica)
CTGGGTTACTGAGAAAAAATCGAAAAAATTCGTAAACAAATCAAGATGGC
TGCCAACATCGACCTTGACAAAATTAGTGGAGAAATTGAGAATGCTCTTA
CAACCGATATATCTGAAGAGAATAAATCAAAGCTTTCCAAAATAAAAGAC
TGGTTTAAAGAGAGAAGATCAGAGGTCAAACCATGGGGTGAATTTTTTAA
TACCAGGAAGTTTGTAAGACCAAGTAATGCTTCCGAGGCAACATCAAGAC
TCGTTTCAAATGTTCGAGTTTATCAAGCAAATTACATCATGATTTGCATG
TTAATGACGTTTTACTGTATGTAAGTCTTTCTTTTCAATTTAATGGAATC
TTTTTTAACAATAATGCTATATTGCTGCTGTTTGAAATGGGCTCTCTTCC
AGTTAAAGTCTGTATATCCAGGCGTAGTTAATCGATATAATNNNNNNNNN
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GAGCCTGACCAAGGGCTATACACTTGCTTATAAAAAAAACAACATGTATC
CAGAATAAAGTCTGAGCCCCTCTGTTGCGATTTCGCGGGCAGCTGAGTAG
CGGAAATACTACGCCCTAACAAATCGCTTCTGGCACTAAAAGGATACACG
AAAAGTGTGTAGTCTGTTATCGGAAGTAATTTCCTGATTAACATACGGTG
GCGGAGCAGCACAAACTTGTCGAACAAAATTGGTTTATCAAACTGATCAA
ACCGCAACCCATTGATCAAACTTAATCAAACACTCACAATCTTTTAAAAA
ATCTTAGAGCTTTTTTTTTTGCTTTACAGTTTTTCTAATCTGTGTAATAT
TTACTGGGGAGATAAATTTTATTGCGATATAAATGAGGACATTTTATTAC
TTAACTTTTAGATTAACTTCACCTCTTTTGTTGATTGGACTTACTATGAG
TGTTGGTGGATGTTTATACATTTCAACAAAAGGACAAGGAAAAACTATTA
AGCTTTTTGGTAAGATCTCAATCTTTTAAGAACAATTAAAATTGTTATAT
TTGAATGAAAGTTTTGATTATCTCTATTGTTCCAAATATTTCTGATATAA
AAGTGATAATCTAGTTTGTTTGTGTAGTTATACTGGGTAACGTGGTTCTT
GCACTATTATATTCGTTTTGAATTTTTGCTGATTAGATTGGTCAGGCATT
TGTTGGCTATGCAAGTTTCCCTCCATTGATACAACTTACTGGACTTCACG
GTAATTGCTTGGAATGCAGATAATTTTAAAAGTTTAATGTGACTTGCCAC
AATTATCAGCCTTGCACTTGTGTTAGTTTTTGTATAATTTTTCAAACTTT
TTTTTGCAGGAAAAGAGTTCAGCACAATACAACAATATGGACTAGTCTTT
TTGATTTGCATGCCCTTATTCTTCTTTGCGTCAGCAGGGTCCACAGTGTT
TTGGATCATAGGTAAAGTGCTTTTCATAATTTTTATCCTATTTTACCTAC
AAGCTCTATTGTCTGCAAAGGTTAATGACTTTTAACAGCGTTTGAGTTTC
AACCCCTTTGGTTATTTGGTACAGGAGAAGTTGATATTTTGAAATTGTAT
TTTCATAGAGAGTTTTTTGAATAAAAAATCATTTAAAACTTTGTCTATGT
AAACTCCTTACCATTTAACTAATGGTTGAAAGCTGTGTATTTTTCTAATA
TTCAAACTTTGATTTTGATATACCAGGTCTGATACCTCTCTCAAATGATT
ATCATTTTCTACAAAGTATTTAGCTTTGATTAATAAATCTTTTTAAATCA
TATATTATCTCCAGGTGCATCAATGGTTATTATTGGTGCTCACGCAGTGA
TGCTCTCAGCCTCAACAACTCCAACTGCTCTGGATATGGAAATGGAAGGA
GTGGAAACAATGAAATAAATCTTCACAATTTTATTAGGTGATGGGTTAGT
TTTCAAATGGAATCAATGTCACTTGTCTCTTTTTGTACCAAGCATCTAGG
CAGGTGGATGGTAAACCCTATCATTCCAATCTAGTTGGTAAAAATATCTG
GTAGCTGTGGATTTTTTGGTTCCTGTTTCTCATGTTTGTTGTATTTGTAT
TTGTATCTTTTTGGCAAAAAGTTTCTTTTTCCATCTTTGAGGCACGCATG
AGACATATTGAACTTGGAGGGAAGGGCAGTACATTTTTGAAGACGGATGG
GATTGTGTTGGTGAGATCCAAAAAGGGACTTACGAAGAGAAGGGTGGAGA
AAGTACCCTCTTGCTTGCCTTAGTAGTAGTACCCAATCACAGGGTTATGG
GTGTCCGACAGTAGCTTTTAAAATTAAATGCAGTACAGCCTCTTTATCTC
GAAATGTTCTCGATTTTCCACTCGAAACAATTTGTGTACCCCATACTGCC
TCATACTGTATTGCTCTAATTTGAAATATGCTCTATCTTACATGTGTTCG
TAAATTATATCTCTAANAACAATTTGTGTACCCCATACTGCCTCATACTG
TATTGCTCTAATTTGAAATATGCTCTATCTTACATGTGTTCGTAAATTAT
ATCTCTAAGTTTGTAATAAAATATATTAGTCTTGTAATAGGAAGCTACAG
ATAAGTTTGTTCAGTTAAACAAACAATTAACTGAAAAGATTTATCAAATT
TATGTTATCTTTTGTAGCGTTTGTCGCTTTATACTTGCACAGAATTATTC
ATACACAATCTTGGATCTAAGAAGTTACAGAAATGTTTACCCAATTTCTT
AAACCAACTATTTGTTTTGATTTTGTATTTAATCAGTTTTGTATACTAAC
ATTTTCATTGTACTGGTAGTTTCATTCTAGATGATCTTTTTTTATAGTTG
TATTGAGGAATTTATTTATTTGATGATGTCTGATATTTTATAGTTTTGAA
TCAGATGTTCGTATTTTATCTTCTTTTGCTTACAGCTGACGTGATATAAT
TTTTTTAAATTATGTTTGGCTTGAGACCAGGCTGCACACACCCCCTCTTA
TATGTTTTGATATAGGGCGCTGCGTGTATCGTGTATGAAATTCCTGTCCG
AGAGTTACCCCCGTCTTTGTGTTTTTGAGTTTAAAAACTTGATTAGCTTG
TTTGTAAGTTTTATGTGATAGACCGAATTTCATTAAATTTTAATCATAAA
TTTGAATGGCTAGAAGTTTATAAATCGTTGGATTTCTGAAGCTTTTTAAG
AAAATTAAAAAATAAAGTTACCCCAAATTTGAAGTAACTCTCGGACGAGA
ATTTCATACTCGATACGCATCCCCTATATCAAAATCAATTCTGGATATGC
ACGCTGTCTAGCTTGAGTCCTTGAGGCACGTACCATTTTCTTTAATGAAT
AACATACAGGTATTATAGATTTCACAGGCCTTGGAATGAGATCAATTCAA
TCAAGAAGTCGAGGAATCTTTTCAAAATATTCTCATACATTCTTCATTTA
TTTTCCTAACTCTACACGCCATTATAATTAAAATACTTCTATCTTATAAA
TAATTGTTGTAATTACAAACATTTATTAACACCGTTATCAATATATTATA
CAATTATACTCCTTGAAAGAAAGAATTTTATGGTGTTCTGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015017XLOC_015017Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026709-exon-sc0000581-1575043694:216440..216759TCONS_00026709-exon-sc0000581-1575043694:216440..216759Clytia hemisphaericaexon
TCONS_00026709-exon-sc0000581-1575043694:213651..213748TCONS_00026709-exon-sc0000581-1575043694:213651..213748Clytia hemisphaericaexon
TCONS_00026709-exon-sc0000581-1575043694:213199..213300TCONS_00026709-exon-sc0000581-1575043694:213199..213300Clytia hemisphaericaexon
TCONS_00026709-exon-sc0000581-1575043694:212723..212845TCONS_00026709-exon-sc0000581-1575043694:212723..212845Clytia hemisphaericaexon
TCONS_00026709-exon-sc0000581-1575043694:211067..211992TCONS_00026709-exon-sc0000581-1575043694:211067..211992Clytia hemisphaericaexon
TCONS_00026709-exon-sc0000581-1510915933:216440..216759TCONS_00026709-exon-sc0000581-1510915933:216440..216759Clytia hemisphaericaexon
TCONS_00026709-exon-sc0000581-1510915933:213651..213748TCONS_00026709-exon-sc0000581-1510915933:213651..213748Clytia hemisphaericaexon
TCONS_00026709-exon-sc0000581-1510915933:213199..213300TCONS_00026709-exon-sc0000581-1510915933:213199..213300Clytia hemisphaericaexon
TCONS_00026709-exon-sc0000581-1510915933:212723..212845TCONS_00026709-exon-sc0000581-1510915933:212723..212845Clytia hemisphaericaexon
TCONS_00026709-exon-sc0000581-1510915933:211067..211992TCONS_00026709-exon-sc0000581-1510915933:211067..211992Clytia hemisphaericaexon
TCONS_00026709-exon-sc0000581-1491911889:216440..216759TCONS_00026709-exon-sc0000581-1491911889:216440..216759Clytia hemisphaericaexon
TCONS_00026709-exon-sc0000581-1491911889:213651..213748TCONS_00026709-exon-sc0000581-1491911889:213651..213748Clytia hemisphaericaexon
TCONS_00026709-exon-sc0000581-1491911889:213199..213300TCONS_00026709-exon-sc0000581-1491911889:213199..213300Clytia hemisphaericaexon
TCONS_00026709-exon-sc0000581-1491911889:212723..212845TCONS_00026709-exon-sc0000581-1491911889:212723..212845Clytia hemisphaericaexon
TCONS_00026709-exon-sc0000581-1491911889:211067..211992TCONS_00026709-exon-sc0000581-1491911889:211067..211992Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000581supercontigsc0000581:211067..216759 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.204216	0	0	0.502241	0.307575	0	0.566052	0	0	0	0	0	0	0	0	0	0	0	0	0	0.598119	0	0	0	0
Blast
[Close]
BLAST of TCONS_00026709 vs. Swiss-Prot (Human)
Match: PRAF1 (Prenylated Rab acceptor protein 1 OS=Homo sapiens GN=RABAC1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.778e-36
Identity = 58/155 (37.42%), Postives = 91/155 (58.71%), Query Frame = 1 
Query:  145 KDWFKERRSEVKPWGEFFNTRKFVRPSNASEATSRLVSNVRVYQANYIMICMLMTFYCILTSPLLLIGLTMSVGGCLYISTKGQGKTIKLFGKEFSTIQQYGLVFLICMPLFFFASAGSTVFWIIGASMVIIGAHAVMLSASTTPTALDMEMEGV 609
            ++W + RR+ ++PW  F + ++F RP N  E   RLV NV  YQ+NY+ + + +  YC++TSP+LL+ L +  G C  +  +     + LFG+E S   QY L   I  P F+ A AGS VFW++GA++V+IG+HA            +++ME V
Sbjct:   32 REWLERRRATIRPWSTFVDQQRFSRPRNLGELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLVLFGREVSPAHQYALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAV-DGEELQMEPV 185
The following BLAST results are available for this feature:
BLAST of TCONS_00026709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRAF14.778e-3637.42Prenylated Rab acceptor protein 1 OS=Homo sapiens ... [more]
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