TCONS_00026780 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026780
Unique NameTCONS_00026780
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1635

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026780 ID=TCONS_00026780|Name=TCONS_00026780|organism=Clytia hemisphaerica|type=transcript|length=1635bp
CAGCTACAAATTTTGTACAACCTTGACGTAAGATCACTATGTGTAATGGC
TCGTACAGGGCACGATATGAGTAACATTTGTCAAAGTGAAACGGTTTGGA
AGAAAATAATTCAACGGGACTTTGGTACCAAGTGCGAAGAATATTCACCA
AATGCTTATAAAAGATTAAAGAGAGAAGAAAGAAGAGCCAAAGAAGAAAT
GGAGAGACAAAGACGTGAGGCTGATGAGCTGAGAAACATGAGGCCAGAAT
TTATTCCCATGCGTGAAGATTCACCTGACTATCTACGTCTCGTCGCTCCC
AATTCTAGAATCCCTGGGATGATAGGTGGACGTTATGACTTGATACCTGG
ACAATTCCCGGACATTGGGGCACCACGGAACGACCCTCTACGTATCGGAC
AACCAAGACGTGGCGATGGTATTCCGGTTGGTCGTGGCATAGTCCCGGGT
GCCCGCTTTGACCCGTACGGCCCCATACCAGATGATGACGACTTTCCTGG
TGGTCCTCCTCTACAACCAGATGTTTTGCAACGCCCTCGCTTCGGGCGTG
GGAATGGATTCGGAGGTGGCGGCGCAAACTTTGGTGGTGGTAGTGGGTTT
ATTTAAGGTCAATGGAACCAAGATGAACTTTATACGTTAGAATGACAACA
TTCTGGGTTTCCAATTTCAACATTTCAGGACTTTGATCAAAATGACACGA
TTTGTATTTAAACAACAAAGAATCAAACTAGTTGTTGTTTGAAGGAATAT
TTAAATGCGATAAAACCAGTTGGTCGATCAACATACGTactttaaagatt
ttcaagaaAGGCAGCGACGAATTTTTTAAGAAGGATAAAATTATTCATTT
TGCTTTGGCAACGATTCTTGCAGTTCACACTTCCAAAGAAATCTACAATC
ACAAAATTGTCCTCATCTCTGGATTGGATCAtcagtgaggatttaaaaag
tACGCAGAAATTGGTGCGTCTTTTAACAACATTCCAAAGGAAACCAACAT
TGCAGCATATGAACAAAGAGCTTCACCACCGTTACATCAATACTACACCA
GTGAAATGAACCAATCAACGCAAAGCTCAACATCTACCAACAATGCTGTA
AAAAGCACATCTCTGTCTTCCAATAATGTTGGAATGTCTTCGATGAACGG
TAAACGAAATGTCGGTGGATTTGGAAATACGAAGACTGTTAAATCTTGTT
TTTCTTCAATGAACGCTTCAAGCTTTGGTAATAACAAGAAAGTGATTGGG
ATTAGAAAAGTTGTCGCTTTTAAATGAGAATTGGTTGAGGTTGATTCATT
TTATGGATCCATCCACAATAAAGAACAATCGTTTTGTATAAAGTCACTCA
CAGAGACAATGGATCAGGAAATTCTTATATCCAAATGTTGATATGCGATA
ACCCACTGCTTGCTCTAAAGGCGATAAACAAAACTTTAAAGAAGAGTAAA
AGACTAAGCTTCCTGCAAAAGACAGTTATTAATATGAAATTATTTCGTAA
ATTTGTACATTTTTTCAAGTGTGGTCCCtcttagaaaattttgagtctgg
tagtgtggtcgtgttacaaaagtacaggctgtttgtaggaaaaaaataat
atatagctgaaactttctccagaccttctctatag
Run BLAST on NCBI

transcript from alignment at sc0000587:3962..11080-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026780 ID=TCONS_00026780|Name=TCONS_00026780|organism=Clytia hemisphaerica|type=transcript|length=7119bp|location=Sequence derived from alignment at sc0000587:3962..11080- (Clytia hemisphaerica)
CAGCTACAAATTTTGTACAACCTTGACGTAAGATCACTATGTGTAATGGC
TCGTACAGGGCACGATATGAGTAACATTTGTCAAAGTGAAACGGTTTGGA
AGAAAATAATTCAACGGGACTTTGGTAAGCTCGATATTATTATTAAAATC
ATATATTTCTATGACAATATACTCTTAGGTTCCAAATAAACGGGGGGGGG
GGAGGTTGGAAAGTTTTCGAGGTTTCAATAAACTGTACTTCTGAAAACCC
AAAAAGGTAAATATAGGCTAAATTGGTCTTCTCCTTTCTCGGATTTTCTT
CAGAAATGAGATTTGTCGTAGAAAGTGCTATTTTCGGACCTACCTCCGGG
TACCCCGGTGGAGGTCCCATAAATTAACCCCTGTCCGTCCGTTCGTCCGT
TTGTCCGTCCGTCTGTTACCAGCTTTTCTCAAGATTGGCTCATTAGTTTT
TTCTGATTTTTTGCACAATGATACAAAATGGCAATGCCCAGAACGTGACG
GAGCCCGATTTTCGAGAAAAAATTCATTTGGGCAAATTTGGGCCAAAAAG
TACCTAAAAATAGGGTTTTTTGGACGTTGCAAAATCCTGTCATTACTTTT
TTCTGATTTTTTGTAAAAAGATGGAGGGCAAGATTCTCTAAAGAATGGCT
TTTCTTATAATCGGTTGTATTTTCATTCAAAAACATTATTGATAGCAATG
CCCACCATCAAGCATGTTTCAATTTTCAAAAAAATTGATTTTTGAAGCCG
GAACTATTAAAAATTCGCCGGAACAACCTATTTTCGCCGGAAAGATAGTA
TTTCTTGAATTTCTTAAGCTATACTTTATATTTTTTTATGAAATTTTGCA
CACTGATGTAAAATGATAATACCTAAAATGTGACGGAACCCGATTTTTGA
AAAACATTTTTTTCCGGCCGAAAATGCCGGAAACATGTATGCCGGAAAAA
CCTGATTTTTGCAGATGCGTATTCGCAATGCTTAAAACATAGCAGAGTTC
GATTTTTGAGAAAAAAAATTTTCCGGTTGAAAATGCCGGAAATCGCGGTT
TTTGCAGATTTTCATTTGACTTTTTCCTTATTTCTTTGTTGTTTTTTTCA
CACAAAAACATTATTGATAACAATGCCCACCATTAAGCATGATTGTCAAT
AAAACAGATTTTTGCAACCGGAACTTTCTATTTCTATTTTCCCTACTCCC
CTTCCCTCATCCCCCATCAACAATCAATGATAAAATTAAATGCGTTATGC
ATTTTCGCAAAACACTATATTGTCTGACTGATTGTTTTCATTTTTCTCCT
TATTTCTATCTAGCTTTCATCATCAGGTATTATTATCCATACAGCGGTCA
TTAAGTAAACCGTTAAAGGTTCAATCGGCGGGCGGTATTGAAAGGTTTTG
TGACTCAAATTGTCATACCCGCGCTGAGGAAATTAAAGCGCCAGGCTTCA
GAGGGCTAAAATATCATTAACGGCCCGGGTATAGGGCAATAACGTCATTT
GCGGCCCGCTCGGAATGGGATTGAAGTCGTTGCATTGAAGCGAAGAGACT
AAACTAACGTCAGAAAAAAACACTTTTCGGTCATTTGCGGCCCGCTCGCA
AGGTGCTAAAAATTTGTTGAAGACATTGCATTGAAGCGTAAAGAATTGGT
TGACGCTAGAAAAAAACGTTGTTTGAATGTGCGATATGGATGATAATAGT
AATAGCGTTAAGTTTTCGTTCGTTGATGTCATTAATTCTGCCCTTGCAAT
TTGATTATTAGCCCTCTAGTGCCATTTGCGCCCTCCGCTTCGCGTCGGGA
CCAAATGACACTATCGGGCGAATAATCAAACTACGCGGGCAGAAAATGAC
AACAACGACCTCAAACTGAACGCTATTGTTATAGGTCCATTCAGCATGTT
GCTTGTTTAATCTATTATAATTAAATATTATTTTTAACAGGTACCAAGTG
CGAAGAATATTCACCAAATGTAAGTCCGTCTATAATGAAATAGGTAAACA
TTTTAAACAGGAGGATATTATTTTCAAGATTTGAATTTTTCCAAACAGTA
TTCCGAAAACTATTTTTAAAATATTTTATGTTGTCTTTTTTGGATGGTGG
AAGCCCTATCCATTACACTGAACTAAGTGATGGGGTGGTGATCTTTTTGA
AAGCGAGCGAAAATCAGTTAGTGCTCATTATGATTTGGAGTAACCCACCT
TCTCCGGTCCTTTGGGAGTTTTTCTAAAATTGTTGTCATTTTTCCTAGGC
TTATAAAAGATTAAAGAGAGAAGAAAGAAGAGCCAAAGAAGAAATGGAGA
GACAAAGACGTGAGGCTGATGAGCTGAGAAACATGAGGCCAGAATTTATT
CCCATGCGTGAAGATTCACCTGACTATCTACGTCTCGTCGCTCCCAATTC
TAGAATCCCTGGGATGATAGGTAAAATTGTAACAAATATCAGTATTATGC
CTTTTACACTTTTTCTTATTAAGAACAAACTATATAAGAACAGGGGAGAA
AAAATTGATTCAACAAGTGATTCAGCTCATCCTATCTATTTTCTTATCAC
TGAACAAGAGTGACATGTTAAATATTTTCGAGATCCGTGGTTAACTCGGG
TTTTTTTAACTCGGGTTTTCCGGGTCTCGTTAAATAAGGGTATGCCGAAG
TTAGACCAATTTGCAATAACTAGCAAGCTTGAAGTGTAAGGATTTGAGTG
TGGCTGAAAATCTATTATGCAATTTTTCCGGACAAAGTTGGGCAGAAAGT
ATATGCATGGATGAAAATCAAAATCACAATTTTATGCAATTTATTTTATT
TTGATTATTCAATGGCATTTTCCAAATATCCATTTTAATTACCTCGACAA
TTGATTATTTGAAAGTCCATAACTCAACTATCTTTTGACGATTTTACTTT
ATCAAAAACCCGTTCCGCTTTTTCTCGGGCACGCTCGAGATATTGTAGGC
TGCACACCTCCCCTCTGATCTGTTTTGATATAGGTGATGCTGATTGTGTA
TAAAATTCCTGTCCGTCAGTTACCCGAAATTTGGCCAACCTGTTTTAATT
TTCTTTAAAATGTTCCAAAAGTCCAATGATTGTATTAACCTTTAGCCATT
AAAATTTCTAATTCAAATTTAATAAAACTTAAAGATCTCTCATATAAAAC
TTACTAATCAAGCAAATCAAGTTTCTAAAACTCAAAAACAGAAAGACGGG
GGTAACTCTCGGACGGGAATTTTATTCACGATACCTATCCCCTATATCAA
AACATATGAGGGGGAGATGTCAGCCTAAATATTTTACTGGTTTAATTTCA
GGTGGACGTTATGACTTGATACCTGGACAATTCCCGGACATTGGGGCACC
ACGGAACGACCCTCTACGTATCGGACAACCAAGACGTGGCGGCAGTAAGA
TGATTTTTATTTTGGAAGGAGATTCCATACATGTTTCTTATGTCTTTTCA
AATTAGTAAATTGATTACGCACTTTTTCTTTCNTACATGTTTCTTATGTC
TTTTCAAATTAGTAAATTGATTACGCACTTTTTCTTTCATAAGAACAATT
TTATAAGAACAATGAGGATTAAAGTCGCCAAAAAAGAAGATCAATTTAAG
TAAAATGTGAGCCTGAATTTATTCAATTTCAAGCAATTTGGGGGGAGTAG
TAAAAATTGGGTAATTTCACCTTATAAATAAGAACAGGATGAGAACAATT
TGAGGCTCAAAGTACCAAAAAATAAGAACATCCGAGCCTCATCAAAAATT
TACTGGTTCTTATAAAAAAATAAAAGAGTATTGTAATAATTTTATACATC
TGACTTGGCTGCAAAACATTCAGTGTTATAAGAAAGATAATATCGAAATC
AAAAATCAAAACATCGGTGTTAAGGCCAATCGAAGCAAATCAAAATCACA
AAAATGAGAACAAAACTTTTGGTTGATTTTCTAGCCGGTCAATTTTCCTC
ATAAAATTGAATGCCGAGTAATCTAGTTACTCATGAAGTATTTTTTCTTA
TTTATCGTCTGATCAAGTAAGAAGCCACATTGTAAAGTTTTGTTAATGTT
CCTATTCATCAACAACTATCTTTACCTTTTTCTGACAGATGGTATTCCGG
TTGGTCGTGGCATAGTCCCGGGTGCCCGCTTTGACCCGTACGGCCCCATA
CCAGATGATGACGACTTTCCTGGTGGTCCTCCTCTACAACCAGATGTTTT
GCAACGCCCTCGCTTCGGGCGTGGGAATGGATTCGGAGGTGGCGGCGCAA
ACTTTGGTGGTGGTAGTGGGTTTATTTAAGGTTAGTTTTTTGCTCTCTTT
TTAAAACCCTTTGAAAAGTCTACACGCCATTCCAAAGGTTTTTTTTATTT
TATCCCTATTTTGCTCTCAAAATGAGTCAATTTGCTTTAAGTGTGTCCTG
TTTGTTGCTCCCATAAGCAAACGGCTCTCAAGGTTTAATTACACTGACGA
TATTTCCACGTGATAGAAAGAAAGATAGAGTGAACGTTTAAAAGCGATTG
GAATTTATATAAAGGCTGATTGTCAATTTCAAGATAAAATTTGATAGATT
GATTTTTAACGTTTTCGAGCACTTTCTGAAAGTAACTTTTTTATTCAATT
GGATATAACTTTCGGTCGAATGAACTAGATTTAATAAATGACCCATCAAA
ATTAAGTTTATCTTTATTCTTTCCAATGAAAAAGAATTGGTTCTTTAAAA
TTCTTAGATTTCGAGAAAATTCACTTTAAAGAGGGAAACTTTTTTGTGGC
GCACCCTGTATTTTATCACAGAATATGTCCGAATATATTTTGCGTCATTA
AACATCGTTTTTGTTCATTTCATTGCATAAAAGATTGTAACACGAAAACT
TTTTTGATATTTGCAACCAAGAAATTATTATGATTTATAGACAGGTCTCG
AATTTCGCGTTCTATATCTGTGTTTGTGTCCTGTTTGTTGCTCCCATAAG
TAAAATGCTCTCATGGTTTAATTACACTGACATGTTTGTTCGATATCTGT
ATACTTTTGATCAAATATTAATCGTAGCAATCGCTTTTGCTTTTGGTGAG
AGGTCAACACTGTCTTAAAAAAGTACACGCTTCTTTTTTATAAGAATGGT
GTTTTTCCATTTCATCATGGATATTCTTAAAACTTTTTGGGAAAAATCAT
CCTGAAATATTCTGACAGTATTCTTAGGCTAGGTCGCAAACCCAGCCTAA
ATCTAACATGCAATATATACCTCAAGCAAGAATTCGGCTTTTTTTGTAAA
ACTTCTTAGCGTTGCTAATGGAATAATTGGCAATTTACAGGTAAAAGGCT
ACATATTTTATATTCTTATAAAAGAAAAAGCTTGTATAGTTAACGATAGC
AACTAAACAAAACAAATATCAAAGTCCGCAAAAATCACGATTTTCATTTG
CGTATTTGAAGTAAACCACGTTTATGTGCACGTGTTACTGGTTTGAGAAT
TCAGGCTCAGATTAGTGACCAAAAGCTTGTCATAACTGATGTGGTTAATT
TTTATTTTTATTTGTTCTTTATTTAACGTTGGTAATAAAAAATAGTGGTT
GAAGTTGATTATTTCTAGGCTACCTGAGGGGTAGTAGGTTCGCGGGGGTG
ACAGGTATGTCCAAAGCCATAAATTGAAAAAATTACCAATTGAGGTTTTC
CCAAAATTTTGACGGTTTTTCAAAAGAAAATTTTCGATTTCAGAGAGTGG
GTTGGTTTTTCTAACCCTTAGAGAGATTTTCAAGGCATTCGTTTCTGCCC
TGGCATAATAGGTACCTATTTTGTTTAATAACCTTTGGGAGGTTACTTAG
TGTTTCCTAATCTTTTTATACAACTAAGACATATATCTGGTATGAAATTT
TATTTGACAAATGATTTGAAGAGATCAACTTTCATCGAATCAAATTCAGA
CAAATGACACCTTGAAGTTATTAATAATGTAATAACTTTCGAAAGAGCAG
ATTTAAAATTCTAGATTCATCGTTTGTCTTCCAAAGTATTGCGTAGGCTT
TCTTTCCAGACTGCAATCTCTTACACATTTAGACAGCTTCAAGTCCCTTA
AGATACAAACCTATAACTAACATAGTTTTTATATTATTCAGGTCAATGGA
ACCAAGATGAACTTTATACGTTAGAATGACAACATTCTGGGTTTCCAATT
TCAACATTTCAGGACTTTGATCAAAATGACACGATTTGTATTTAAACAAC
AAAGAATCAAACTAGTTGTTGTTTGAAGGAATATTTAAATGCGATAAAAC
CAGTTGGTCGATCAACATACGTACTTTAAAGATTTTCAAGAAAGGCAGCG
ACGAATTTTTTAAGAAGGATAAAATTATTCATTTTGCTTTGGCAACGATT
CTTGCAGTTCACACTTCCAAAGAAATCTACAATCACAAAATTGTCCTCAT
CTCTGGATTGGATCATCAGTGAGGATTTAAAAAGTACGCAGAAATTGGTG
CGTCTTTTAACAACATTCCAAAGGAAACCAACATTGCAGCATATGAACAA
AGAGCTTCACCACCGTTACATCAATACTACACCAGTGAAATGAACCAATC
AACGCAAAGCTCAACATCTACCAACAATGCTGTAAAAAGCACATCTCTGT
CTTCCAATAATGTTGGAATGTCTTCGATGAACGGTAAACGAAATGTCGGT
GGATTTGGAAATACGAAGACTGTTAAATCTTGTTTTTCTTCAATGAACGC
TTCAAGCTTTGGTAATAACAAGAAAGTGATTGGGATTAGAAAAGTTGTCG
CTTTTAAATGAGAATTGGTTGAGGTTGATTCATTTTATGGATCCATCCAC
AATAAAGAACAATCGTTTTGTATAAAGTCACTCACAGAGACAATGGATCA
GGAAATTCTTATATCCAAATGTTGATATGCGATAACCCACTGCTTGCTCT
AAAGGCGATAAACAAAACTTTAAAGAAGAGTAAAAGACTAAGCTTCCTGC
AAAAGACAGTTATTAATATGAAATTATTTCGTAAATTTGTACATTTTTTC
AAGTGTGGTCCCTCTTAGAAAATTTTGAGTCTGGTAGTGTGGTCGTGTTA
CAAAAGTACAGGCTGTTTGTAGGAAAAAAATAATATATAGCTGAAACTTT
CTCCAGACCTTCTCTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015044XLOC_015044Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026780-exon-sc0000587-1575043694:10957..11080TCONS_00026780-exon-sc0000587-1575043694:10957..11080Clytia hemisphaericaexon
TCONS_00026780-exon-sc0000587-1575043694:9112..9140TCONS_00026780-exon-sc0000587-1575043694:9112..9140Clytia hemisphaericaexon
TCONS_00026780-exon-sc0000587-1575043694:8661..8832TCONS_00026780-exon-sc0000587-1575043694:8661..8832Clytia hemisphaericaexon
TCONS_00026780-exon-sc0000587-1575043694:7690..7779TCONS_00026780-exon-sc0000587-1575043694:7690..7779Clytia hemisphaericaexon
TCONS_00026780-exon-sc0000587-1575043694:6801..6992TCONS_00026780-exon-sc0000587-1575043694:6801..6992Clytia hemisphaericaexon
TCONS_00026780-exon-sc0000587-1575043694:3962..4989TCONS_00026780-exon-sc0000587-1575043694:3962..4989Clytia hemisphaericaexon
TCONS_00026780-exon-sc0000587-1510915933:10957..11080TCONS_00026780-exon-sc0000587-1510915933:10957..11080Clytia hemisphaericaexon
TCONS_00026780-exon-sc0000587-1510915933:9112..9140TCONS_00026780-exon-sc0000587-1510915933:9112..9140Clytia hemisphaericaexon
TCONS_00026780-exon-sc0000587-1510915933:8661..8832TCONS_00026780-exon-sc0000587-1510915933:8661..8832Clytia hemisphaericaexon
TCONS_00026780-exon-sc0000587-1510915933:7690..7779TCONS_00026780-exon-sc0000587-1510915933:7690..7779Clytia hemisphaericaexon
TCONS_00026780-exon-sc0000587-1510915933:6801..6992TCONS_00026780-exon-sc0000587-1510915933:6801..6992Clytia hemisphaericaexon
TCONS_00026780-exon-sc0000587-1510915933:3962..4989TCONS_00026780-exon-sc0000587-1510915933:3962..4989Clytia hemisphaericaexon
TCONS_00026780-exon-sc0000587-1491911889:10957..11080TCONS_00026780-exon-sc0000587-1491911889:10957..11080Clytia hemisphaericaexon
TCONS_00026780-exon-sc0000587-1491911889:9112..9140TCONS_00026780-exon-sc0000587-1491911889:9112..9140Clytia hemisphaericaexon
TCONS_00026780-exon-sc0000587-1491911889:8661..8832TCONS_00026780-exon-sc0000587-1491911889:8661..8832Clytia hemisphaericaexon
TCONS_00026780-exon-sc0000587-1491911889:7690..7779TCONS_00026780-exon-sc0000587-1491911889:7690..7779Clytia hemisphaericaexon
TCONS_00026780-exon-sc0000587-1491911889:6801..6992TCONS_00026780-exon-sc0000587-1491911889:6801..6992Clytia hemisphaericaexon
TCONS_00026780-exon-sc0000587-1491911889:3962..4989TCONS_00026780-exon-sc0000587-1491911889:3962..4989Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000587supercontigsc0000587:3962..11080 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.68709	8.69765	8.08797	6.10672	4.23369e-05	0	0	1.15369	9.97101e-08	2.78301e-05	0	0	0.000463679	4.55131e-05	8.92615	14.0436	5.05575	7.12375	5.50241	8.10787	6.98129	6.67021	10.6621	8.5661	0	0.781863	3.93564	3.58023	7.84786	8.13949
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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