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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026793 ID=TCONS_00026793|Name=TCONS_00026793|organism=Clytia hemisphaerica|type=transcript|length=818bp
CAACAGTCCAACTTCAAGAATTATTGGTGGACAGGACTCATCTGTGGGGA
GATGGCCCTGGCAAGTCGCTGTTAAAGAGGAAAATGCAGGACCTGGCCGA
GGTTCATTTTGTGGTGGCACCTTGATTAGTCCAAAATGGGTACTCACTGC
AGCCCATTGTTTCAAAACACGCACGACTGCCTCAGTTGTTTTAGGTGAAG
TAGATTTCCGGATTTTGGAGCCCTCAGAACAGCGAAGAAATGTTGAAGAA
ATTCACAAACATCCTTTGTACAATCCTGATGTGAGTCAAGACTATGATTA
TGCTTTGCTTGAGCTAGAAGAAGCCGTTGTAATAACTAGAAACGTACGGC
CAATCTGCTTACCAAGAGCCCGTAGGTTTAGAGACACGACGTTCGATGGA
AAAACATGTACGATTACCGGTTGGGGAGCTGTAGACGTTACGCCGCCTGA
CAGTCCAGACGGTGAACCAACGATTGAAGGAACACCGACTCTCCAGGAGG
CTGAGGTTGAGGTCATCACACGTGAGCAATGCAGTCAATCATGGAACCTA
TCACCCCGAATGGTTTGTGCTGGTCCCACACGTGATGTCGGAACCTGTTT
CGGCGATTCGGGCGGTCCTTTACAATGTCGAGATGGGCGTATATGGTATC
TTTGGGGCGTTACTTCATTCGGATCAGAATTTTGTAGAGAAAAACCAGGT
GTTTTTGCATCTCTCAAGAATTCTGGTGAAGATCGAAATGAAATTCTGAG
TTGGATTGATGAGGAGATTAATGGAAGTGGACCAGTTTTACCTGGAAAAT
AGTTTGTCCTGAAGAAAA Run BLAST on NCBI transcript from alignment at sc0000587:156437..160087- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026793 ID=TCONS_00026793|Name=TCONS_00026793|organism=Clytia hemisphaerica|type=transcript|length=3651bp|location=Sequence derived from alignment at sc0000587:156437..160087- (Clytia hemisphaerica)
CAACAGTCCAACTTCAAGAATTATTGGTGGACAGGACTCATCTGTGGGGA
GATGGCCCTGGCAAGTCGCTGTTAAAGAGGAAAATGCAGGACCTGGCCGA
GGTTCATTTTGTGGTGGCACCTTGATTAGTCCAAAATGGGTACTCACTGC
AGCCCATTGTTTCAAAACACGCACGACTGCCTCAGTTGTTTTAGGTAAGC
AACATTCTTATTCAATATCTGCTCTCCTAAAACAAATTCCTACATGATGC
AAACAAATTTTGTTCGAGTAGAAAAAAAAAGTGTAAAATCTTTGCCTTGT
CCGGGTGGGGATGGTTAATTTCGTTCAATCAGTGTTACTAGTCGCTATTA
TTTGACAAATTAACCTTCAGGAACAAATTTCAGTTAAATCGAATGAGTCA
ATCAGTCAATACAAAAATTTTTTAAATCATCTTCAATTTCGGAATACCAC
TGGTCAAAGTTTCAAGGTCATACCACTTCTCAATCTTACCGTAAAATCCA
CGTAATAAAGTCTCAGTAATCAATTCAGTCTTAATAAGTCAATAGTCAAT
AATGTCAATGCCATTTAACAATAACCCTCCGCTTCATTTCACTCCTTCAC
GCATTTATCAGCGTCATTTTACATGTATTCTTCAGTGCCAAACAATAAAT
CTCCCCAAATAGGGAGAACCAACCTCGATCAGAGGCAGTTTGAAAGACCC
TTTTCGTTTCTCTGTTTTTCATATTTCGTTCAGTAATGCACAACATGTGC
CTAGTGGCTTTCTACAGTTGATCACGTGATATTTATCTTGAAATAATTAC
AGGTGAAGTAGATTTCCGGATTTTGGAGCCCTCAGAACAGCGAAGAAATG
TTGAAGAAATTCACAAACATCCTTTGTACAATCCTGATGTGAGTCAAGAC
TATGATTATGCTTTGCTTGAGCTAGAAGAAGCCGTTGTAATAACTAGAAA
CGTACGGCCAATCTGCTTACCAAGAGCCCGTAGGTTTAGAGACACGACGT
TCGATGGAAAAACATGTACGATTACCGGTTGGGGAGCTGTAGACGTTACG
CCGCCTGACAGTCCAGACGGTGAACCAACGATTGAAGGAACACCGGTAAA
TTTATTTTGGTATCGGGTACAGCCGACTTTCTCTAATTCGATCTTCAAGG
GCGGATAAAGAATAAAGATTTTGATTAGAACATTTTACATCTTTTTCAAG
CTGAGGAACTACCACAATATTTTAGATCGAATTACAATAGACGATATCGG
CTTTCCAAATTCTCCCCGAATGATTACCCATGATGCATTGCGCAAATAAA
TTCACAGACGATATCGACTTTCCGCGAATTTTTTCCGATATCGTCTGTTG
GTAGAACACTTTATTGTTGTTGACAATTATTTTCAACTTATTTGATAGAT
CGAATTACAGAGAGATTCGAATAATAGAGGCTCAAATTACAGAGAGCTGA
CTGTAATCCTTTGTTTGGAGAATTCTCTAAGAAAACAGAAAACCAACTAC
CAATTAACCATTTAAGTGCCACTGTGACATCATATTAGATCACCGGCACC
CGGTAGGTCTGGATCTAGAGGAGCTCCATGACCCATGTTTCCCTGTTTTT
TGACCCTACCCAAAAATAAAAATACTTAGTCGAAATTGGCGTTTTTTTTA
AAGAAAATCCAGTCAATGATCTTCATCCGAAAACTTTTATTTTTGAACCC
CTGAGAACCCGGTATACTCCCTCCCTTATAAAGCATTAGCCTCATTCGGT
CATTGGACAATTAAGTCTTATAATCTTTCCCATACCTTCNTCGAGTAGAA
AAAAAAAGTGTAAAATCTTTGCCTTGTCCGGGTGGGGATGGTTAATTTCG
TTCAATCAGTGTTACTAGTCGCTATTATTTGACAAATTAACCTTCAGGAA
CAAATTTCAGTTAAATCGAATGAGTCAATCAGTCAATACAAAAATTTTTT
AAATCATCTTCAATTTCGGAATACCACTGGTCAAAGTTTCAAGGTCATAC
CACTTCTCAATCTTACCGTAAAATCCACGTAATAAAGTCTCAGTAATCAA
TTCAGTCTTAATAAGTCAATAGTCAATAATGTCAATGCCATTTAACAATA
ACCCTCCGCTTCATTTCACTCCTTCACGCATTTATCAGCGTCATTTTACA
TGTATTCTTCAGTGCCAAACAATAAATCTCCCCAAATAGGGAGAACCAAC
CTCGATCAGAGGCAGTTTGAAAGACCCTTTTCGTTTCTCTGTTTTTCATA
TTTCGTTCAGTAATGCACAACATGTGCCTAGTGGCTTTCTACAGTTGATC
ACGTGATATTTATCTTGAAATAATTACAGGTGAAGTAGATTTCCGGATTT
TGGAGCCCTCAGAACAGCGAAGAAATGTTGAAGAAATTCACAAACATCCT
TTGTACAATCCTGATGTGAGTCAAGACTATGATTATGCTTTGCTTGAGCT
AGAAGAAGCCGTTGTAATAACTAGAAACGTACGGCCAATCTGCTTACCAA
GAGCCCGTAGGTTTAGAGACACGACGTTCGATGGAAAAACATGTACGATT
ACCGGTTGGGGAGCTGTAGACGTTACGCCGCCTGACAGTCCAGACGGTGA
ACCAACGATTGAAGGAACACCGGTAAATTTATTTTGGTATCGGGTACAGC
CGACTTTCTCTAATTCGATCTTCAAGGGCGGATAAAGAATAAAGATTTTG
ATTAGAACATTTTACATCTTTTTCAAGCTGAGGAACTACCACAATATTTT
AGATCGAATTACAATAGACGATATCGGCTTTCCAAATTCTCCCCGAATGA
TTACCCATGATGCATTGCGCAAATAAATTCACAGACGATATCGACTTTCC
GCGAATTTTTTCCGATATCGTCTGTTGGTAGAACACTTTATTGTTGTTGA
CAATTATTTTCAACTTATTTGATAGATCGAATTACAGAGAGATTCGAATA
ATAGAGGCTCAAATTACAGAGAGCTGACTGTAATCCTTTGTTTGGAGAAT
TCTCTAAGAAAACAGAAAACCAACTACCAATTAACCATTTAAGTGCCACT
GTGACATCATATTAGATCACCGGCACCCGGTAGGTCTGGATCTAGAGGAG
CTCCATGACCCATGTTTCCCTGTTTTTTGACCCTACCCAAAAATAAAAAT
ACTTAGTCGAAATTGGCGTTTTTTTTAAAGAAAATCCAGTCAATGATCTT
CATCCGAAAACTTTTATTTTTGAACCCCTGAGAACCCGGTATACTCCCTC
CCTTATAAAGCATTAGCCTCATTCGGTCATTGGACAATTAAGTCTTATAA
TCTTTCCCATACCTTCTTAGACTCTCCAGGAGGCTGAGGTTGAGGTCATC
ACACGTGAGCAATGCAGTCAATCATGGAACCTATCACCCCGAATGGTTTG
TGCTGGTCCCACACGTGATGTCGGAACCTGTTTCGGCGATTCGGGCGGTC
CTTTACAATGTCGAGATGGGCGTATATGGTATCTTTGGGGCGTTACTTCA
TTCGGATCAGAATTTTGTAGAGAAAAACCAGGTGTTTTTGCATCTCTCAA
GAATTCTGGTGAAGATCGAAATGAAATTCTGAGTTGGATTGATGAGGAGA
TTAATGGAAGTGGACCAGTTTTACCTGGAAAATAGTTTGTCCTGAAGAAA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026793-exon-sc0000587-1575043694:159894..160087 | TCONS_00026793-exon-sc0000587-1575043694:159894..160087 | Clytia hemisphaerica | exon |
| TCONS_00026793-exon-sc0000587-1575043694:157466..157758 | TCONS_00026793-exon-sc0000587-1575043694:157466..157758 | Clytia hemisphaerica | exon |
| TCONS_00026793-exon-sc0000587-1575043694:156437..156767 | TCONS_00026793-exon-sc0000587-1575043694:156437..156767 | Clytia hemisphaerica | exon |
| TCONS_00026793-exon-sc0000587-1510915933:159894..160087 | TCONS_00026793-exon-sc0000587-1510915933:159894..160087 | Clytia hemisphaerica | exon |
| TCONS_00026793-exon-sc0000587-1510915933:157466..157758 | TCONS_00026793-exon-sc0000587-1510915933:157466..157758 | Clytia hemisphaerica | exon |
| TCONS_00026793-exon-sc0000587-1510915933:156437..156767 | TCONS_00026793-exon-sc0000587-1510915933:156437..156767 | Clytia hemisphaerica | exon |
| TCONS_00026793-exon-sc0000587-1491911889:159894..160087 | TCONS_00026793-exon-sc0000587-1491911889:159894..160087 | Clytia hemisphaerica | exon |
| TCONS_00026793-exon-sc0000587-1491911889:157466..157758 | TCONS_00026793-exon-sc0000587-1491911889:157466..157758 | Clytia hemisphaerica | exon |
| TCONS_00026793-exon-sc0000587-1491911889:156437..156767 | TCONS_00026793-exon-sc0000587-1491911889:156437..156767 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000587 | supercontig | sc0000587:156437..160087 - |
Blast
BLAST of TCONS_00026793 vs. Swiss-Prot (Human)
Match: CTRB1 (Chymotrypsinogen B OS=Homo sapiens GN=CTRB1 PE=2 SV=2) HSP 1 Score: 139.813 bits (351), Expect = 3.741e-39 Identity = 86/238 (36.13%), Postives = 129/238 (54.20%), Query Frame = 2
Query: 5 SPTSRIIGGQDSSVGRWPWQVAVKEENAGPGRGSFCGGTLISPKWVLTAAHCFKTRTTASVVLGEVDFRILEPSEQRRNVEEIHKHPLYNPDVSQDYDYALLELEEAVVITRNVRPICLPRARRFRDTTFDGKTCTITGWGAVDVTPPDSPDGEPTIEGTPTLQEAEVEVITREQCSQSWN--LSPRMVCAGPTRDVGTCFGDSGGPLQCRDGRIWYLWGVTSFGSEFCR-EKPGVFA 709
S SRI+ G+D+ G WPWQV+++++ FCGG+LIS WV+TAAHC RT+ VV GE D E + Q + ++ K+P ++ ++ + D LL+L ++ V +CLP A D G C TGWG +PD LQ+A + +++ +C +SW ++ M+CAG + V +C GDSGGPL C+ W L G+ S+GS+ C PGV+A
Sbjct: 29 SGLSRIVNGEDAVPGSWPWQVSLQDKTGF----HFCGGSLISEDWVVTAAHC-GVRTSDVVVAGEFDQGSDEENIQVLKIAKVFKNPKFSI-LTVNNDITLLKLATPARFSQTVSAVCLPSAD---DDFPAGTLCATTGWGKTKYNANKTPD---------KLQQAALPLLSNAECKKSWGRRITDVMICAGAS-GVSSCMGDSGGPLVCQKDGAWTLVGIVSWGSDTCSTSSPGVYA 247
The following BLAST results are available for this feature:
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