TCONS_00026799 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026799
Unique NameTCONS_00026799
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length810

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026799 ID=TCONS_00026799|Name=TCONS_00026799|organism=Clytia hemisphaerica|type=transcript|length=810bp
AATATagctatatatatatattcgATTTGggtcattttcaaaagattttg
gtgCACAGAAGACTAATGGCAGCGATCAATAAGTTGAATTTAGAGAACAA
GACAAAAGAAGAATTATTTGaagCAATATGGTTTAACCAAATTTATCCGA
CGATCAAGCCAAAAATATTAGGTAAAGTGTATGCCCAACGTAGAAAGAAA
CTTGgcaatatcaaaatcaaacaaCTGTGCATTATTGGAAAAAggttttt
aagaaacaaaacgAATCATCAGCCCGAACAAGTTGAAGTTATGCAAATTT
CTGTTCGACAGAGCCGACCGATAATAATCGATTTATATGCAGTTCTATCA
AAAATTGTcCTTCTGGGATCCGAAAGAAATCCGGTTGGCTTTATGTGCTG
GTACTAACAAACTGTATATGTGGTCGTTAGCTGGTTGTTTGGTTGTTGAG
GTGCCTGGTGAAGGGATTCAATGCTCGAAAAGCTTCAAAACCTAGAATTC
TGGAGTTTTTTAATTCGAAACAATCTTAATGGCAAAAGTGGATGTAATAT
CATTAATTTGATAGTTCGAGTATTTAATCTTAGCTTAAAGCtatgatttt
gagagaaaacaTAAACTTTCTTGGGTTGAGCTGCGATATCTGTTGTTGAT
AAATTAAACTAATAGATTGTAGTACGCATTGTTTGTGAtggaatattttc
atttttacgaCAAATTCTCATCTTTACGGCTTTCTTTCTTCGAATTTGTT
ATTATAGCCGTCGAGTATATAGAGTACAATCTTATAATGTCTTATTTCAT
CGAATTCggt
Run BLAST on NCBI

transcript from alignment at sc0000587:188374..196065-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026799 ID=TCONS_00026799|Name=TCONS_00026799|organism=Clytia hemisphaerica|type=transcript|length=7692bp|location=Sequence derived from alignment at sc0000587:188374..196065- (Clytia hemisphaerica)
AATATAGCTATATATATATATTCGATTTGGGTCATTTTCAAAAGATTTTG
GTGCACAGAAGACTAATGGCAGCGATCAATAAGTTGAATTTAGAGAACAA
GACAAAAGAAGAATTATTTGAAGGTTTGAATTTTTTATATTAAGTTTAGA
GTTATATATATAACATAACTGTCACTCCCCATTCTTTGGAAAGAAGCTCT
TACAGTAACTTGCTTTGAAACATTCATAGTGTCCTCCTGGGTTGGTTCCC
CCCACTAAAAATCAAAATTTTTCTCCATTCCCCCCTCTTTTATTTCCCCC
ACCATATTTCAAAATTTTTCGGTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGGGGGGGGGGAGGACACTATGACATTTCAAACAAACTTTATTTTATATG
ATGATTTTTTGCAAATTCAGGATGTGTTTTATTTACAATTTAATGTATTT
CATTCTCAGTTTAACCTCAGACTCAAATGGCATGCAGATTAATTTGGGCG
ATTATATCTCTTATTTACATTTAAAGATTTTTGTGAACTGAAGCTACATA
TGTTTTGGGGCAATATTTTGCCTCTTGCAGTGGACTGTTTAAAGTTGATT
ATTCTTAAATAATGATAAGTGTATTGGTTTATATGTGTGACATGATATTT
TACTAGGTAGTGAAATTAAAATTTGTGGATTTTGTAAGTTTAAGTCTGTT
TTGCTTATACATTTTTCAATAATGACCCAGAATGGCCAGAATTGTTTAGG
TTCGGAGGAAATAGTTGTTACCCAGAATTTATAATAACACCCTTCCTATC
TTTCGTTTTCTTATCTCTGAAAATAATATACTTTCATTTGCTTTTCCCCA
GAGTATTTAAAATTGTCATCATTACATCCTGTTTCAAAACCTTAGCATTA
TGAAGCCCTGTTCAAATTGATACGTTAATAATGGTTAGTCCCCTGTCTTA
ATTTTTTGAATAAGACTTAATCTTTTTAAATTATTCTTTGTTCAATCTTT
GATTTGTATGACAAAGAGCCCAAGTTTGGGGTTCTAAATACGAAGTTATG
CATTACGTACGATTCTATTGACAGTAAAACTAAAATGGACGTACAAGAAA
TTAAATCAGTACTGATGGTGTTATTCAATGTTGGGTAAAATGCAAAATAT
CAAGCAAAATTTGATGTTTAAATTTGTGAAAGGTTTGGTTATTATCATTT
GGTAGTGAAAAGTATCTACTGTAAAATTGTCTATCATTTGCACTCCTGTT
CAAAAAATAGGAGATAAAAAAATTAGCAGGGAAACAAACTCAAACTGTTC
TAGTTCACTTTCATATTCTTTTACTGTCCAAGGATGTGTATAATACAATT
CAACATGTTCCGGAAGAGTGTTATTTATATACAATCACCACTTATACAAA
ACAAAACACCGACGGAGAATGTTATTCAAAAAATGTAAAAACTTGTTTAC
CTCAACACAACAAAATGATTTGGAACTATTGCCTATTGAAAGAAGGGTTC
ATAATTCCTTTGCCATTCTTTTAAAAAGTAATTTCCCGTTCCCTTTAAAA
AAGCTAAGCTACACCTTGTGATGTACCTGATTTACTTTAAAAGCCTACTC
AGAAGGTATTCTTTTCCAATTTAGCAATATGGTTTAACCAAATTTATCCG
ACGATCAAGCCAAAAATATTAGGTAAAGTGTATGCCCAACGTAGAAAGAA
ACTTGGCAATATCAAAATCAAACAACTGGTAAGTTTTAAACGTGCAAATC
ATTTTCGGAATTTTTAGAAAGTTGGGAAAATGTTAATTGTGAGTGCTTCG
TCAGTGTTTATTAATTTGCAATACAACATAATATCTCTTAAATAATAATG
AAGGAATGAAAATTTATCTGGGCCATCGTTTTCCAATGACTTACTTACCT
GTTTTGTTAAAAAGTCTATTCGCTTTCTTTAATTAGGTCTTGTTTTTTTT
TTAATTAGAAAAAATTTAAAACACTCATTGATGAAAGCTCTAACGTCGAT
ATTGCTTTAAAAGCACTTGGAGAAGATTTATCAAATCGATTCAAGGTCAA
TTGTTATTCTTCAAGTTGCCTAAGTTTGTCAGAATTTGCTTAAAAAGTTC
ATAATTTTTATTTCTGCAACAAACAAAAAAAACATGACGATTTCAACAAA
TTAAAATCTCGTGTTTCCGATACCGTCGTTGAAAAAAATTTTCCTTTTAA
ATTTATTACCAGTCTCCTTAAAAGTTGACCACATCGCTAAAGGTTGATAG
CTACATTGTTACTTTTTCGAAGCGGGCTACGCGGCTTTTTGCGCAATGCA
ATTGGTTCTTTTCGCATGACGACGGGCTTACACTGGCCAGAGTTGCCCGT
CGTTAGGAAAATTCATTGTAACGTCAAGGAAAATGAATAATGCGTTGACA
TAATTTCTCTCATTTTTTATTTCTGACGTCAGAAATTATAACAATTTTTT
ATCTCTTTTCGCTTGATTTTCGCTTTATTTCGCTATTTTTCTGATTAAAG
CGCTAAAAAATCAATAGAAACTGAAGGAAACGGTTAACAAATACAATAAT
GACCGGTTAGTGAGGGCTGTACTGAGAAATATTACCCGAGGTCAAGTAAC
GACCAAGCTAAGTGAATTTTTTAATATTCTTTATTATAGGTTACTTTAAC
TTTAGAAGTGGATAAACTTGATTTAACTAAAGATGCAAACCAGAAGGTAC
ACAGGAACAATGTTCATTCTAGAATACTTTTATTCTTACCCATTCATTTG
CAATTTTTCAATTAAAAATCCTAAAAAGATTTAAATAATTTTTAATAAAT
TTGAAAGAATTTAATAGAAAATTTTCACATCTACAACATTTTACTGCCAT
AAAATTCACCTTAAAAAGTAATACTTCAGCTTGGAAAATCTTCTTTGTCC
TTTTAAGTCGACTGACCACCAAATAAGTGAGGATAACACAAGTGAGACTG
ACGCAGAAGATTCAATAGACAAAGAAAACGAAGAAACAAAGGTTTTCAGT
ATTCTTAAAGCTCTTGTTAGCTCGGCAAGGGCTATCATATAGAAGCAATT
TTTTTTATTTTTGATGACTTTCAAAAGGTATTCTACAGTAATAAAGACAG
CAGAGTAGTATACAGTACATAATACGATATTCATAAAAGATTGATCTTTT
ATCTTTTCCATCCTTTTAAGACGACTGAGCACCAAATAAGTGACGATAAT
GCAAGTGAANATTTTTTCATTTTTGATGACTTTCAAAAGGTAATAAAGAC
AGTAGAGTAGTATACAGTACATAATACGATATTCATAAAAGATTGATCTT
TTATCTTTTCCATCCTTTTAAGACGACTGAGCACCAAATAAGTGACGATA
ATGCAAGTGAAATATACGCAGAAGATTCAAGTGAAGAAATAGAAAAGACA
GAGGTTTTTACTCAAATTATAATGATTTCCTTTCTTTCTTTTTAATTTCA
ATAATCCTTATAAAAACTCAAAAACCCACTAAAAACAAAAAACAAGAGTG
CAAGATTTGCAATACAATCCGAACAGTATCTCAAACTTAATTCCTTTTGA
AATTTTATTAGACTGGGACTCGAAAAAGATTCAAATTCACATTGAAGGAA
GAAACGCCAATAGACACCAAAGTCAGGCGGATAGAACGACTAAAAAGAAT
AAATGGACAGCAAGCGAATACAATTGAGCAACTGAAAGAGAAAAATGCAT
CTCTAACCCTTCGAAACGCTGCCTTCACCCGTTTGAAGATAATAGAACAG
CTAGGAGAAAGGCGCTCTACTTTAATGGTAGACGCCTCACTTTTTTCTAA
TACTTTCCATGCTGGTGATGCCATATTACAACAAGAAGATTCCGATTTGC
TCGACCCCTCCACTTTTGAAGGGTTGGAAGGAAAGATGTTGATTCCTGGT
CTGTTTTGCTTTGCCAAAAAAGTCACTCTCTCCAACGGAGAATCTGTTGT
GCTGAAAACACATAAGCCAGAGAGTTTCGGTCTTCAGAGCTTAGCCGTCC
TAAGTCACGAACATCGTCTCCTAAAGTTTGTTGGAAGCCACGCAAATTTG
GTTTCGACAGTTGGTTTGGTCCCCACAAACGGGATATTTGCTCATGTCAT
GAAATTTGAGTATGGCATGAGTCTCTTTGAAATGTCACAAAAATCTATTT
CCATAATTTCTATCTCAAATTTCAAATCCATCATCGAGGGAGTCGCTGAT
GGACTAAATTTTTTGTTTGATAAAGGGGTCATCCATAACCATCTTATTAC
TGACAACGTTATTGTTAGAGATGGTTCCCCTAGAATTGTTGGGTTTACGT
TTTCATGCAGGGTGTATTCCACCAAAAACAATGTACAAGAAGTCTTAAAA
AAGTTCCAGGGTTCAAATCATTTGGCTCCCGAACTATACAACGGGTCTTG
TGCTAGTTATTCGACTGATGTTTATGCGTTTGGTGTGCTAGTACAAAGCA
TCTTAAAAATGAGATTCGGCTTTACAATGAACACAACCTTCAAGTCAAGA
GTTGACTGTTATGCTGACAGCTGTCTGTATACGGCAGACCTAAGGCCACC
GCACAAGTTTCTGGCTTCGAAAACAAAACGAATGCTATATTACAAAATTT
AATATTAGATATGTATTTTCCTGATTCCTTCTTAAGGCTATAAGTAGTAA
TTCATCATTCCTGCATAACTCGAAAATTTTCTTGAGAAAATGTTGCTACC
TTTTTTAGATCCCTGCTGTTTCATGTTCTATTATTAGAAACAATGCAGAT
TTATAAAAGATGAACAATTAATGTTTCAAATAGTAATAGTTATGGTACAT
GATGTATTTTTCGAGTTTAGATTTTCGTCATATTTTCCGAGCCTTTAAGA
AAGTTTTGGCGCGTTTTTAGCCAATCAAATTGCTAATTGGCGATAAATTG
AGGTAGTTAGTCTGATTCAGTTCATAGGGAACAATAGTTTCTCATTTTCT
TCGAAATTTTCAGGCCTAAATGCTCCTTTTTTTAGGCAATAATGACAAGT
ACCATAACGACCATAGTACTTTTTGAAATTCAAGCTTAAAATTTATATGC
TTCGAGGAAATTTATCATGTACTTTTATAATTTTGTTTCTGCTCCGTTGA
AGATAAACTGTTTCATTTTAACGATAATGAGGGTTTCTGACTAATACCTA
GATTTTTGAACTTGGAAGACCTTTTTAGGGTTTCGACTCTACTTTTGTTC
GTATTTTTTGACGAGATTTGATTATTCAAATCTTTTTAATTTAGTGGATT
TTTTTGTGCTACGTTTCTCTTCATCTGAAAATATTCTATAAATATGATAA
TTATTCCTATTTGGACCATTTGAAGTGAACTTTTCGTAATGAAAAAATTG
GAAAAGATTTTCTCAAAAATTTAAGTGACTGCAAAACCTGTGATGAAATC
TTTAATTTTTAAAATCCTCTATTTTTAGTGCATTATTGGAAAAAGGTTTT
TAAGAAACAAAACGAATCATCAGCCCGAACAAGTTGAAGTTATGCAAATT
TCTGTTCGACAGAGCCGACCGATAATAATCGATTTATATGCAGTTCTATC
AAAAATTGTGTAAGTTGAATTACTTGGGACTCTATTGGCATTATTTTCTC
TATTTTCATATAATATCCTAATTTTAAGGACATCATGCTAAAAGATTCTA
AACAACAATATAATTCGATAGTAGAAAATTAATTTGGATATTTTCTTTCT
ATAGGTGATTGCTAATTAAAAACAACCAGTTGTATTTTCATTTCTTCAGC
CTTCTGGGATCCGAAAGAAATCCGGTTGGCTTTATGTGCTGGTACTAACA
AACTGTATATGTGGTCGTTAGCTGGTTGTTTGGTTGTTGAGGTGCCTGGT
GAAGGTCAGTGTGCTTGTATTAATTATATTAAGAGATCCCGTCCCATTAC
CAAGGTCATCTGCTAATATCATTATAATATATTGAAACATCCTTTGTAAC
ATATAGTCAACAATTACTGTCAAAATCTGAAGTTACTCGGTTTGATTCAA
GGTAACGTGGGTTTTACGCCGGCCCTTATTACGCTATCGACGAAAAAATG
CGAATTTCCTCAGGATTTTATCAGGAGGCTAGGGTCCATCTTTGTTTTTA
ACATAGATAATTGCTTCCTTGGCACTCGATGAATATGGATATACCTTANA
ATAGATGGATCCATCTTTGTTTTTAACATGAATAATTGCTTCCTTGGCAC
TCGATGAATATGGATATACCTGAGTACCCAGTATATTTTCAAGTTCAGCT
CATTTAGAGGTGAGAAGGTTTGTGAAGGGTGCTTTTTGGCTTTTTCTTCT
CCGCAAAATCTAGCATTAATTATTTCCATTCTCGTTCTTTCTTAGGGATT
CAATGCTCGAAAAGCTTCAAAACCTAGAATTCTGGAGTTTTTTAATTCGA
AACAATCTTAATGGCAAAAGTGGATGTAATATCATTAATTTGATAGTTCG
AGTATTTAATCTTAGCTTAAAGCTATGATTTTGAGAGAAAACATAAACTT
TCTTGGGTTGAGCTGCGATATCTGTTGTTGATAAATTAAACTAATAGATT
GTAGTACGCATTGTTTGTGATGGAATATTTTCATTTTTACGACAAATTCT
CATCTTTACGGCTTTCTTTCTTCGAATTTGTTATTATAGCCGTCGAGTAT
ATAGAGTACAATCTTATAATGTCTTATTTCATCGAATTCGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015052XLOC_015052Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026799-exon-sc0000587-1575043694:195943..196065TCONS_00026799-exon-sc0000587-1575043694:195943..196065Clytia hemisphaericaexon
TCONS_00026799-exon-sc0000587-1575043694:193338..193441TCONS_00026799-exon-sc0000587-1575043694:193338..193441Clytia hemisphaericaexon
TCONS_00026799-exon-sc0000587-1575043694:189507..189637TCONS_00026799-exon-sc0000587-1575043694:189507..189637Clytia hemisphaericaexon
TCONS_00026799-exon-sc0000587-1575043694:189212..189316TCONS_00026799-exon-sc0000587-1575043694:189212..189316Clytia hemisphaericaexon
TCONS_00026799-exon-sc0000587-1575043694:188374..188720TCONS_00026799-exon-sc0000587-1575043694:188374..188720Clytia hemisphaericaexon
TCONS_00026799-exon-sc0000587-1510915933:195943..196065TCONS_00026799-exon-sc0000587-1510915933:195943..196065Clytia hemisphaericaexon
TCONS_00026799-exon-sc0000587-1510915933:193338..193441TCONS_00026799-exon-sc0000587-1510915933:193338..193441Clytia hemisphaericaexon
TCONS_00026799-exon-sc0000587-1510915933:189507..189637TCONS_00026799-exon-sc0000587-1510915933:189507..189637Clytia hemisphaericaexon
TCONS_00026799-exon-sc0000587-1510915933:189212..189316TCONS_00026799-exon-sc0000587-1510915933:189212..189316Clytia hemisphaericaexon
TCONS_00026799-exon-sc0000587-1510915933:188374..188720TCONS_00026799-exon-sc0000587-1510915933:188374..188720Clytia hemisphaericaexon
TCONS_00026799-exon-sc0000587-1491911889:195943..196065TCONS_00026799-exon-sc0000587-1491911889:195943..196065Clytia hemisphaericaexon
TCONS_00026799-exon-sc0000587-1491911889:193338..193441TCONS_00026799-exon-sc0000587-1491911889:193338..193441Clytia hemisphaericaexon
TCONS_00026799-exon-sc0000587-1491911889:189507..189637TCONS_00026799-exon-sc0000587-1491911889:189507..189637Clytia hemisphaericaexon
TCONS_00026799-exon-sc0000587-1491911889:189212..189316TCONS_00026799-exon-sc0000587-1491911889:189212..189316Clytia hemisphaericaexon
TCONS_00026799-exon-sc0000587-1491911889:188374..188720TCONS_00026799-exon-sc0000587-1491911889:188374..188720Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000587supercontigsc0000587:188374..196065 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.258221	0	0.464322	5.88425	0.961891	0	0	1.3072	0.882178	0	3.97187	2.03357	1.22407	1.24739	1.19858	0.631431	0	0.151775	1.70021	3.14112	3.30512	0.462107	1.19159	1.30223	0	1.56307	2.16464	1.65967	3.01885
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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