TCONS_00026862 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026862
Unique NameTCONS_00026862
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length298

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026862 ID=TCONS_00026862|Name=TCONS_00026862|organism=Clytia hemisphaerica|type=transcript|length=298bp
TTGCGCTATGGAAAGAACCATGAGATCAAGACTCAAACAAGCTATACATC
ACCGTCTGGTGTTGAGATTAAAAACAAAGATGTTGTGAAAGACCTTGGAA
TCCTTATGGACAGTAATTGCACATTTCAGAAGCAAATTACTGCAGTAATC
GAAAAGGCTAAAAACTTAACATCTTGGATCCTGAGAACTTTTTCTTCACG
ATCTTTAAATTGTATGACCATACTATATAAATCATTGGTGATACCAATAT
TAGAATATTGCTCCGTTCTGTGGAGCCCAAATGCAGTTGGTCTCATTC
Run BLAST on NCBI

protein sequence of TCONS_00026862-protein

>TCONS_00026862-protein ID=TCONS_00026862-protein|Name=TCONS_00026862-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
LRYGKNHEIKTQTSYTSPSGVEIKNKDVVKDLGILMDSNCTFQKQITAVI
EKAKNLTSWILRTFSSRSLNCMTILYKSLVIPILEYCSVLWSPNAVGLI
Run BLAST on NCBI

transcript from alignment at sc0000591:185018..185315

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026862 ID=TCONS_00026862|Name=TCONS_00026862|organism=Clytia hemisphaerica|type=transcript|length=298bp|location=Sequence derived from alignment at sc0000591:185018..185315 (Clytia hemisphaerica)
GAATGAGACCAACTGCATTTGGGCTCCACAGAACGGAGCAATATTCTAAT
ATTGGTATCACCAATGATTTATATAGTATGGTCATACAATTTAAAGATCG
TGAAGAAAAAGTTCTCAGGATCCAAGATGTTAAGTTTTTAGCCTTTTCGA
TTACTGCAGTAATTTGCTTCTGAAATGTGCAATTACTGTCCATAAGGATT
CCAAGGTCTTTCACAACATCTTTGTTTTTAATCTCAACACCAGACGGTGA
TGTATAGCTTGTTTGAGTCTTGATCTCATGGTTCTTTCCATAGCGCAA

Coding sequence (CDS) from alignment at sc0000591:185018..185315

>TCONS_00026862 ID=TCONS_00026862|Name=TCONS_00026862|organism=Clytia hemisphaerica|type=CDS|length=297bp|location=Sequence derived from alignment at sc0000591:185018..185315 (Clytia hemisphaerica)
AATGAGACCAACTGCATTTGGGCTCCACAGAACGGAGCAATATTCTAATA
TTGGTATCACCAATGATTTATATAGTATGGTCATACAATTTAAAGATCGT
GAAGAAAAAGTTCTCAGGATCCAAGATGTTAAGTTTTTAGCCTTTTCGAT
TACTGCAGTAATTTGCTTCTGAAATGTGCAATTACTGTCCATAAGGATTC
CAAGGTCTTTCACAACATCTTTGTTTTTAATCTCAACACCAGACGGTGAT
GTATAGCTTGTTTGAGTCTTGATCTCATGGTTCTTTCCATAGCGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015090XLOC_015090Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026862-exon-sc0000591-1491911889:185018..185315TCONS_00026862-exon-sc0000591-1491911889:185018..185315Clytia hemisphaericaexon
TCONS_00026862-exon-sc0000591-1510915933:185018..185315TCONS_00026862-exon-sc0000591-1510915933:185018..185315Clytia hemisphaericaexon
TCONS_00026862-exon-sc0000591-1575043694:185018..185315TCONS_00026862-exon-sc0000591-1575043694:185018..185315Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026862-proteinTCONS_00026862-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000591supercontigsc0000591:185018..185315 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.83143	4.3936	5.86228	7.46427	3.14023	4.01889	2.31947	5.3735	1.80472	1.66266	1.80883	1.62837	2.06446	2.42263	3.31041	0.293467	0.340687	2.20471	3.12455	0	5.32148	2.46958	2.90969	3.98231	0	0.498913	0.551164	2.19461	2.73793	2.44356
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026862 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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