TCONS_00026894 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026894
Unique NameTCONS_00026894
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026894 ID=TCONS_00026894|Name=TCONS_00026894|organism=Clytia hemisphaerica|type=transcript|length=2339bp
GTAAGTTGTCATAGTTCGGATGTAAACAAACAACtggaaatcatcaaaac
aaaatggcgacgGAGTGAACAATCACAGATCAAAATCAGGAAAAGACCAG
CCAGTGATCAGGTTTTACAGCTCATTCATTGATTGAAAATGTCCTCACTT
ATCATGCATGGAAGAAGAGAAGGTCAGGTGAAGAATGGAGGATTAGCATC
AGAGTTACCAAGAATTGGTCTCATGGCTCAAGGAATCAATCCCAATgagG
TTGCTGTCTTTCAACCAAAAGATTGGCAGCGAATACAAAATAATCTTGCA
CGGTACAATGAAGCTTCAGAAAAAGCAGAACAAAAGAGACGTGATAGAGA
GAATCTTCACGCAGCGTCAAAAGAGTTGGTTAAACATTGGGAGAATACTA
TCGAAGGCCAGAGGTTGAAAAAACTTCAAGCTAGAAAACTCCGCGAAGAA
CAAGAAGAGgAGGAACGTAAAAAGATTGATATTGAAGAAGCTAAAATTCA
AGCACAAAagcgtaaagaagccattgagAGGGCTAAACAACAACAATATT
ATGAGACTGATCGTGTCAAAGGCTTCCATGGTGCACTTTTATTGACTGAA
GTTTTAAAGGAAAGAGATGCACAAATTGCTTTCAAAAATTCCAGACAGGA
TTttcagaaagaaagagaaaaccACTTGATCAAATTGCAAAAACAGAATC
TTGACGATCTTCTGAAAGCAGAACAAGAAAAATTACAGGAGACTAGACAA
AGATCTACGGAAGTtgcaaatttccaaaaattacaggtCAAAGATTGTGA
CAACATCAAACAATTGGAAAAAAGTGAGGATAAGGAGGAAGGAAAGACTC
TGAAAGATCAATTCGATGCTTATTGTAACACCAAGAAAACCATCGCGAAT
AAACACCGCCAAAAGAAAAAGGCACTTCaagaattttataaaaatgaaat
acaatTAAAAAGGgaAAAAGAGCAAGAAGATCTTTTGAAAGAAGaagctg
aaaatgaaaaaatcaaaaaattcgtCAAAGCGAAAAAGaaAATGGCTAAC
ATGCGGAAAGAGAAAGAACAACAGATTTTCGATAACTTCCAAGAACATAC
AGAGATGATGCGCAGTAAACTACAAGACAGCATGCAACAACAAATTGATG
ACGAAGATGATCGCATCGCCAAAGCTGTCGCCGAACGCGAACAAAAACGA
ATGGAAGAATTAAACCGCAAACAGCAAAAACAAAAGGACTCTTTACAAGC
CATGAAAAATCATCGCATACAAATGATGACGGATTCTAATCATCAGCAAC
AAGAGAATAAAGCAAAAGATCAAATGTTGTTGCAGCAACGTATCAAGCAA
GACAATAAGTTTTTCGAAGACAAGAAAAAGGAGCGTAAAGAGAAACGGCA
AGTAGCAAGCAAATTACAAAGCACACACAAAGATCAGATGtTCCAGAAAG
AAGACAAGAGTGCGAAGGAAAGAAACGAGCAATTGGAAGTcgataaaaat
aataaagagCTTCTAGTAAAGGAagaagaaattttccaaaattacgCTGA
TAAAGTCATCACAAATGCTACCGATAATGGGCGTAACCCATTTCCTTTAA
TTAAAGCCGCCCGAGAAGGTCCTGGTGGAGGACGTGGACCTAAATTTGAA
GGTAATGCAGGTTTGAGGCCGAGTTATATAGTTGCTGACGCTACTGGGGT
CCAATTACCGCATTATTTGAAAGACGAAAGTGTCGGAAATCGCGTTTACG
GACATGTCTGTAAATCAGGAACCAGACTTGGATTCACATGGTAATTTGTA
CATGgtacatttttctttcaattaattttttttatttccaaattttaatt
tctgatatatttttatattataaaatCCTTGGAAATGATTAATTTATAAT
GATGCCgtactgtatatatttttaatgaTTAGATATAATAGAATTTGAAC
ATAATGAACATAATTGTCCTGTTAATTCGTAGAATGCTGGAAGCATAGGG
AATATTCTACAGATAATTGACTACTTGTTGACTATAGGTTGCTGACCCTT
TCACGTCCCAGAGCTTTACACTTTTTGAAGACAAATTCAAGAGTTTTGCA
CGAAttttttatcaagttttttATCTAATTTCCACACACGGAGAATACTT
TTCCTTGCAAGGAGTGTGAGTTATCAAATACCGCAGAGAGTAATATGATA
TTTATAACTGAGGTGAATCTTGGACTTGCATGACAGTAAAAGAAGTTTCG
GTGTCTTCCATGTGCGTTGTGGTTGTTGTAAACTCTCCTTCGTAAATTTC
ATCGTCTTCCTCTAAAGTCATGCTTTCATTCGTTCTTCC
Run BLAST on NCBI

transcript from alignment at sc0000596:4937..21070+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026894 ID=TCONS_00026894|Name=TCONS_00026894|organism=Clytia hemisphaerica|type=transcript|length=16134bp|location=Sequence derived from alignment at sc0000596:4937..21070+ (Clytia hemisphaerica)
GTAAGTTGTCATAGTTCGGATGTAAACAAACAACtggaaatcatcaaaac
aaaatggcgacgGAGTGAACAATCACAGATCAAAATCAGGAAAAGACCAG
CCAGTGATCAGGTTTTACAGCTCATTCATTGATTGAAAATGTCCTCACTT
ATCATGCATGGAAGAAGAGAAGGTCAGGTGAAGAATGGAGGTACCAATTT
TTGCCATATTTCACTTTCTGATTCGAAATGCAAGCAAAATCTTTGTGTTC
TTTACTTTTTTATGGCGCGCCGAATTACTTTttattatcaactttttttt
cgacaccaacttttgttttttgacaTCAGTTTTATTTTCTGATACCAACT
TTTCGTTTTTTGCGACCAACTTCATGTTTTTTCATACAGTCATCTTTTTT
TCTCCgacaccaattttttttttcggcaccaattttttttccaatagacc
tttttttaaagaggtaaaccctgttgaataattatgtagtccagcataaa
aacaatgatacagccatgcataattactgtttcatgcatattataataat
taagcatggctatatcattgttttttttgctggactacataattattcaa
cagggtggcctcattattaaaaaaaggtctataccaACTTCTTTTCAAGA
CCCGGTTACGAAACTTCTTTTTTACGAAGTCAACCTTTTTGGTTATTGTC
TCGTCCACCCAACCTGATTAATATAATGTGTGTCTGGGGCTTTAACGAAA
TGCCCACCATGAAACTTTTCCAAAcgggattgaaaaaataaaaagctgAA
ACACCAGCATGAATACTGACTAGGACGAAGTCTGGAAGTTTGTTTCGGTT
GAACTTGAAGTCATTCCTANATGCATGGAAGAAGAGAAGGTCAGGTGAAG
AATGGAGGTACCAATTTTTGCCATATTTCACTTTCTGATTCGAAAtgcaa
gcaaaatctttttagTGTTCTTTACTTACTTTATGGCGCGCCGAATTACT
TTttattatcaacttttttttcgacaccaacttttgttttttgacatcag
ttttattttctgatacaaacttttcgttttttgcgaccaatttcatgttt
tttcatTTACAGTCATCTTTTTTTCTCgacaccaattttttttttcgaca
ccaattttttttccgatacCAACTTCTTTTCAAGACCCGGTTACGAAACT
TCTTTTTTACGAAGTCAACCTTTTTGGTTATTGTCTCGTCCACCCAACCT
GATTAATATAATTTGTGTCTGGGGCTTTAACGAAATGCCCACCATGAAAC
TTTTCCAAAcggaattgaaaaaataaaaagctgAAACACCAGCATGAATA
CTGACTAGGACGAAGTCTGGAAGTTTGTTTCGGTTGAACTTGAAGTCATT
CCTATAGTTTGTACTTGTATATACTTTGTGTTTTACTTCAAATTTGGTTT
GTGaactttcagttttttttctgttgttttttcctatcgctagatttcac
taaatgtagtcctccaaaacaaaagaatcactagatacaatccgtcgtca
tgattggagtgcgttctatgcgcgtttggGAAAATAAGTAGcagggaaat
aagtagcttcaatttctcttgcctgagaagggttaaagattcgcctctag
cccttcgggcttgaaactcaatggtcatcACGCCCAATCGTGCCGCCTTT
TTAGAGCAGAATAGATTATTGGCAATGATGTAGTAAAGCCCGAAGCAGCC
GAAGGGCTAGCTAGATGTTGaataagtcacgtgacattctAATAGAATTT
CAgagcttgaccaatcagaagatTTTCGGAAAGATtagcagaaatatttt
ttccgatgttcactttttttgcttggaagagcttaaagcactccatctag
cccttcgggctttacagaaatctggtATCGCGTTGTGTACCGtaaaaagc
acaggtcgaaatcttATGTCGACGCTGTGctgacgaatcgagattctatt
cagcgcgcaatcaacgcagacaaaagtaaccatgacgaccatccaagatc
ttggatgaagttcaaagttgatatttttattcccatttagtaattactgt
tatacatttggggatcacgtactgtaaaagatttcttttgaaagaaactc
acttcaattaaACTTTCTGGGGAATTCTAATATCTTtaaggtttctgggg
aattcgtaaatagtaaactgcatactgatacagtctgctagatattttta
ataaggtaatatttgctcttcatctttgatacgttctacagtgattagat
tgacacatacACGATATAATTCCTATTAtcggtcttcagaggttaatata
ttctttgaaaacttaacctctgatactcagggtacgtTAGAAGGTAATCG
AGACAAGAGTtagtatcggaaaataaaagTTGGTAGTAAGGGAAAAAAAT
GGTATCGGAAAAAAAAGTTagtgtcgaaaaaaaaaagttggtgtcgaaaa
aaaaaagttggtgttgaaaaaaaaaagttggtgtcgaaaaaaaaagttgg
tgtcgaaaaaaaagttggtaataAAATAGTTCTTTTCTAAAGCTGGGCAC
AGCACATAGATAGGAAAAGACAGGCTGATTTAATTCATAAATTGAAAACA
TATAGTACTGCCATAAATATGtttcatattttttcttttaatcagTACAC
AATCTTTAATTtgtaaggggtcactcacataaaTTTTTGGTTAGAAAAAT
GTCAATTGacgaagcgatcaaaaaaaaagtttattacagtatttattttc
accagaatattaataaaagttcattctgggctgtttgttttggttttcaa
aacagaCGAAGCAAGTGGGTGGATGGGTTAAAAGTTGTTGGCGTTTTTTT
CAAATCTAGCTACAGGTATATGTACCACAAAACCCACAGGTACCTCAAAA
CCAACAATTTCAGTTCTAGAGttctagaaaaatctaaaatgtttttatta
gcaTAACTTTTTAAGATTATGTTGGTATAATAgtttctttattatttaaa
acaaaattgagcATTATTGGttgggtaaaagtttttttatcaagatttaT
CGCTAGAAATctaacttcaaaatttttgatttttttcaaaaaatggtcag
ataAGTCACTTGCTATTGACTAACCTATcaatctttcgttttctaataCC
TCTAGGGATAACACAAATGTAGGAAAAAAGTCCTAAGTGCTGTAAGCAAT
GTGTTTATTTTAATTGCTctcaaaaaactcatttttaaattgtgggtttt
gaggtacaaatgagaaaaattgcaagttttagaatttttcgaTGTCaaac
tcaaaaatatttatctatttctCAAACATACTTCTGGAATACATACAATT
TTGTGacacattttcaagaaaaattatgcaaaaatacaACAATAATGTTA
AGCATAACTCAAAAGCTTAACAAAAAGTATGgatatattacattatattt
acTAAAGCTAGTCGGTTTATTCCTGATACTTTGttaaacatattttcaat
tGAATCATGGTCTGGgatgttcatttttttcctcaAATGGGAATGACCTT
TAATGGCCCATCTATGATGTCATGAACTGGGAAAATGCTTATATCTGGAA
GATGGTCTGGGGTGTCTTCAAGAACAGTGCCACTCCCAACTTTAGGCTTT
AGACAGTGCAACTGAATTGAGTCAACAGCGCCATCTTcatcttttaaaaa
tcttttcaacaaaCGACCAATATacaacctttttgttttcttggtgGTGT
AGATGGCAGCATACCATCTAGATGGCAGCATACCATCTACCAGTGACTTC
AGTCTCTTTTGTTGGCTATGCCAGGACTTTCCAGCAATTCTTCAGTTTTT
GGGTGTCGTTTTCATCATCAGTTTCATCTTCGGAAATTTCGCTTTCTTCA
GATTCAAATTCCTCACCTTCCTCATCTGATGACGAATCCTCCTCAAACAA
TTGTTTAGAGTTTGAATGCTGTTTGGCTGGTAATATTATCAGTGGTTTGA
TTCCATTAACTTACTTTAGCTTTGCTGCAAACTGAAGGATAATGCAATAG
TGCAATACTGGGCACTGCTTTAATCCTAAAGCCAAAGATTTTTGTTGCAA
ACAGGTACATTGAGTTTTGCATTTGATGAATGTTTCTCTGATCTACTCTC
TCTTCTttgcttcttctttttcagtttccTTCTTCAGTTTCTCATCCCTG
ATTTctttgaccttggttgctacaTCTTTAGCCCTCCTCAAGCCGTGTAC
CTGAGTCACCCTTGTAGTTGCGGTTGCTTTCTTTTCTCCGTGTGGCTTAA
CCCTTTTTATTGTCAGAAGCCCAGGAATTGCTTCTTTCTGCCATCTCCCT
TATCAGGGACTGAGCCTGGCCAGATTTAGCCTTCCAATAATCATGAgaac
cttttcttttgtcaGAAGGAGACATGATGAGTCTGGAGTTGATGTACTGT
AGATGTTGATGGAGGGATTTCTTCTTGTATACATGCTACTGCTCTGTCAA
GCTTATCTTACTGCATGAAGTTTACGCTCAATCCACTTGATGTTATTCCA
ACCCGCTTGGCACATGAAACTAATGTATCTTTATCTGCCCATATTTAGGC
CAAATCTCTCCCAAGATAGTCATAAAAGCCTCACGatttttgttttgcat
cggATTAAAATGGGATTCTTTAGTTTTTCGATATTCATAGTGGAGATTGC
ACTGTAATTTCAACAACTTCATATGCTTTGCAAAAGTCTTCTTTTCATAG
TAAATAATGGTTTCATTTGCTTCAATTAATGCCTAAATCAGTTTGATTTG
CTACCCAGACAatgtaaaaaagtttctatcatTTGCAATAAATAACTATG
TACGGTGATGTTTTGTAACTTTCTTGAGTGATAACAACAGTCTATGCAGT
TTCCAAAATCATTTCAACACAATTAGGAAAACATGTAATCCttaattttt
acatacaaaATACCTATATGAAATACAANTGGGACTCCTCGCACCATCAA
ACAAGTTTCTTGATAAAGGCAgcccaaaaaataattatttagatCAGAAA
TTTAGTGTGGGTTTTGTGGTACATATACCTGTAGAAACATTGATATTTTT
TACTCGCCATGTTTCAGTTTGATCGCTTCGtctgttttgaaaaccaaaac
aaatggCCCGGAATGAACTTTTATTGATATTTCTGGTGAAAATGAATACT
GTAATAAATCACCACAAACATCATCAATTGTGTCAACTGgacaaacttaa
aaaaattagcaaaaatagAGTCAACAAGTCAGTAAACTTTATGCTATATA
TGTATTTTATAATTTAGGATTAGCATCAGAGTTACCAAGAATTGGTCTCA
TGGCTCAAGGAATCAATCCCAATgaggtaggtaaacatccaaaGGTTTAT
ATATCTCACTATAAATAGAAGAATTGAAAAACTCTTTAATATAAAATGCT
ATGGAGATCACTTTCCTAGTTTCAGGTAGTGTGGTTTCTGTGTCAacatt
caacaaaataaaacagaatttgtctaaaattaaaaaatatatacttttta
atgaaaattgtaTGCACTTGAAATTCTTATTTAGGTTGCTGTCTTTCAAC
CAAAAGATTGGCAGCGAATACAAAATAATCTTGCACGGTACAATGAAGCT
TCAGAAAAAGCAGAACAAAAGAGACGTGATAGAGAGAATCTTCACGCAGC
GTCAAAAGAGTTGGTTAAACATTGGGAGAATACTATCGAAGGCCAGAGGT
TGAAAAAACTTCAAGCTAGAAAACTCCGCGAAGAACAAGAAGAGGTACCA
TACCAAATTTGCTCTTTCAAGCGTACTCAATTTATTCTGTGTCTTTGTCA
CTTTGTTAgtcttactttttctttttgctttataCTCTTCACTCTTTATA
TTAACTGAACTCTGTATTAGTGAACAATTGATTAATTGAACCCCTTAGCG
TTTGAGTTTTGTGAAACTTTTGTATAGAAAGTGAATTATGATAGCTTTGG
TTGGCTTTAGTTCAAGATTCTTAAACATTCTCAAGTTAGCTATGTATCCC
ATCAAATACTCTAAAAcgttttctttaattttgattacTCAATTTTCCAG
GCATATACTGTaacctttttttgtaaaattatcattttcaggAGGAACGT
AAAAAGATTGATATTGAAGAAGCTAAAATTCAAGCACAAAagcgtaaaga
agccattgagAGGGCTAAACAACAACAATATTATGAGACTGATCGTGTCA
AAGGCTTCCATGTGAGTAGTTTTAAAGTCcctacttaaaaaaaaatccat
tgATCCTAAGTCACAGCTGATGGTAGACAACTTTCACTAGAGGCCATTCT
ATTCAACGATACAATTAGTAAATGTCCTAGGACCTCAAAATGTAATACTT
TGTAATGGTATGTATGCGTTATTCAACTTTAATGAATATCTTTCTTCTCA
TAGGGTGCACTTTTATTGACTGAAGTTTTAAAGGAAAGAGATGCACAAAT
TGCTTTCAAAAATTCCAGACAGGATTttcagaaagaaagagaaaaccACT
TGATCAAATTGCAAAAACAGGTACCTATTTAGAGTTATGTTCAATAATTT
GGTGCAAATCTAGAGGACCCAATTTCTAAAAGAATAATacacaatttttc
atatttcgtttttggacctaccccggtggggtggaggtcctataaattca
cctctgtccgtccgtccgtccgttcgttaccagcttttcccaagattgaa
tcataggaatcatttggtttttggtacaaaggtgcaaaatggtagtggcc
aaaatgtgacggagacctattttcgaaaaaaaaatatgaaaagaatattt
caagatcatgaaattttggtttctaaacgttttttttataagaaacaaac
gactaattttaataaatcgtcactatttgtgttctgaatgatNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ntttgtgttctgaatgattgtttaacgttcatgctcacgtagatatcaat
tatatatgtgttaaatgcataaccaggtaggtccataaaagtatcacttg
tttgtaTTGAAATTTCATCTCATATCATCAATATCTtagatttgattttc
aaatacGCCACCAAAATGACTTTTTACATATTTAACGTTTCTTTATCAGA
ATCTTGACGATCTTCTGAAAGCAGAACAAGAAAAATTACAGGAGACTAGA
CAAAGATCTACGGAAGTtgcaaatttccaaaaattacagtaagctatttt
tttctcaattttgagtGGATTCATTGAATAATCTTTGAATAAATGTATAT
ATCATTTGAATTTCATTCTATAATCTGTAAGCTTTTTTGATAAAGGTTAC
TtttaaatttcatgatttcaagatttttttttttaggttaaaCCAATCCA
TTTATTTGATCACTTTGAAAAGCTTAAGTAGAACTTTTAATCAATATTCA
AGTTTTACTTTACAACTGATCGATGtgtcttttttttatataagggtCAA
AGATTGTGACAACATCAAACAATTGGAAAAAAGTGAGGATAAGGAGGAAG
GAAAGACTCTGAAAGATCAATTCGATGCTTATTGTAACACCAAGAAAACC
ATCGCGAATAAACACCGCCAAAAGAAAAAGGCACTTCaagaattttataa
aaatgaaatacaatTAAAAAGGGTAAGATCGTTTTTTGTTTGTGAAAACA
TGTAATATCTGTTCGTGATACTTTTCCATTACTATCATACTTGTCTTTTC
AATGATTTTATCCAGGGGTACTAGGTGGTTTGCGAGATGATGGTTAAATA
TCCGagtcaaatttcgaaaatcgaccctcagagagaaaattttgtccatt
tttgacgtttttgctacCCTTAGAGTAATTTTAGACcaaatttcaataat
ttatgACCCCTATTTTTGAATTTGGTAATTTTGGAatccttacagagact
caattgctGTTTAAATGGTTTCTGTATCCTTTTGAATGACTTTCGGAAGT
GTGAAAAAAGAACCCTTATGacgcacccattttgcctaagtaacccccAC
CCGGATTTTAATCCTATGGGATCCTTTTCAATGTTTTAGTAGCAATTTTA
TAATTGGTCAATAACCCGTCAATGGAAGAGGAAATATTGTCGGAGAAATT
AATGACAcctcaatttttctttcaggaAAAAGAGCAAGAAGATCTTTTGA
AAGAAGaagctgaaaatgaaaaaatcaaaaaattcgtCAAAGCGAAAAAG
GTAAGAAATAACTCTATCTACTCCCTACACATAATGATAGAGTCGATTTC
AtgctttttaaatgaaaaaagtaGGCACGCCTCgtatgctgaaaaacccc
aatCAAAGAAAGAATTCCTCAAAAAAGGTTAGCAGACATTGTATAGCCTT
TCATTAACCCTTTTaaaagtgccaatgtcgtatttatcagacatgggcta
tgtaggatggggaagccctcctgtaatgcccagtttgagttagaaatcgt
catttttggtctaactcgtacgaatcggattgggcttcatagccaagcaa
aaaaaaaaaatcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgcaaaaaaaaaaa
tcaaaagtgagtcttttcagcgagattttaagctaaaaagtcaaagaaat
gcaaaaatttgacaaaaatcaacttttttaagattttgacagttttttga
taatttctgGTTTCTGAACGAGttatccaagaacctccaaatttggactc
taagctatccaacagactataaacgagcttctaactccttctagatccgg
agatataagcttTAAAGTtcgaactagcgattttctttaaaaaactaaga
aaaaatgaccgtggcacttaaagggttaacgcCCTCATTAGATAATTGTG
ATTTATTAACTAGAAGTAATATTCAACGGCGTGAAtatgttttatttact
ttttagaaAATGGCTAACATGCGGAAAGAGAAAGAACAACAGATTTTCGA
GTAAGTTTCCATTTCTTCCAATTCTTGATAACATTTGATCTTGATTGTTT
GTCCGTttagaagaaaagaagaagaacgCTGAGATCTCCTGAACTCATTT
AGGGTGTTTTTGCTGAATTTTAATCTTATTGTCTTCTTTCTCCATTCTTC
ACAGTAACTTCCAAGAACATACAGAGATGATGCGCAGTAAACTACAAGAC
AGCATGCAACAACAAATTGATGACGAAGATGATCGCATCGCCAAAGCTGT
CGCCGAACGCGAACAAAAACGAATGGTGAGGAATTTTCATCGAATGTCTC
TTTTCCGAGTCCATCTATGACAGATCTTCCATTCATGATGTATACgagga
aaaatatatttgaaaaattttgaatattaatTTGTTCATTCTTTTGATCT
TTCCATGTAACAGGAAGAATTAAACCGCAAACAGCAAAAACAAAAGGACT
CTTTACAAGCCATGAAAAATCATCGCATACAAATGGTAAGAGCTCTTATT
CATCTTACTTCTCTATTAAACAAAGTCAAGCCCATCTTGAAAGACGATGT
GAAGTCTTTGTTGATTTTTGCGTTTTCAACCATTGAGTCGAAAGCCCCAA
AGGGACTAAGGATTAAACTCTTGCAtcggaaatgaagccacttagtTCCC
CTCTTAAACGAGTGACACGCGTTGTTTTCACAAGAAGGGCTGGATTGCAA
GTAAAATATATCGCCAGATCTCGAAAAACGTGTCGTGTGAAGAATAGAaa
atcgctagattcaatctgtcattctaaatgcggcgcaaatcttaaaaggt
ttcactttttcttgctcgAGAAAGCTCAAAGATTCCTTTCTAGCACTTCA
GGCtttaatgtttttgataattgcATTATTTTATTGAAGCTAATGGCCAG
ATCAGATGGTTCCAgtgatttcattgttttttttattgccAGATGACGGA
TTCTAATCATCAGCAACAAGAGAATAAAGCAAAAGATCAAATGTTGTTGC
AGCAACGTATCAAGCAAGACAATAAGGTAAAAAAGTTTACATCCAAAAAG
AACGAATGTAGTTTAAACTCCNCTCCTGAACTCATTTAGGGTGTTTTTGC
TGAATTTTAATCTTATTGTCTTCTTTCTCCATTCTTCACAGTAACTTCCA
AGAACATACAGAGATGATGCGCAGTAAACTACAAGACAGCATGCAACAAC
AAATTGATGACGAAGATGATCGCATCGCCAAAGCTGTCGCCGAACGCGAA
CAAAAACGAATGGTGAGGAATTTTCATCGAATGTCTCTTTTCCGAGTCCA
TCTATGACAGATCTTCCATTCATGATGTATACgaggaaaaatatatttga
aaaattttgaatattaatTTGTTCATTCTTTTGATCTTTCCATGTAACAG
GAAGAATTAAACCGCAAACAGCAAAAACAAAAGGACTCTTTACAAGCCAT
GAAAAATCATCGCATACAAATGGTAAGAGCTCTTATTCATCTTACTTCTC
TATTAAACAAAGTCAAGCCCATCTTGAAAGACGATGTGAAGTCTTTGTTG
ATTTTTGCGTTTTCAACCATTGAGTCGAAAGCCCCAAAGGGACTAAGGAT
TAAACTCTTGCAtcggaaatgaagccacttagtTCCCCTCTTAAACGAGT
GACACGCGTTGTTTTCACAAGAAGGGCTGGATTGCAAGTAAAATATATCG
CCAGATCTCGAAAAACGTGTCGTGTGAAGAATAGAaaatcgctagattca
atctgtcattctaaatgcggcgcaaatcttaaaaggtttcactttttctt
gctcgAGAAAGCTCAAAGATTTCTTTCTAGCACTTCAGGCtttaatgttt
ttgataattgcATTATTTTATTGAAGCTAATGGCCAGATCAGATGGTTCC
AGtgatttaattgttttttttattgccAGATGACGGATTCTAATCATCAG
CAACAAGAGAATAAAGCAAAAGATCAAATGTTGTTGCAGCAACGTATCAA
GCAAGACAATAAGGTAAAAAAGTTTACATCCAAAAAGAACGAATGTAGTT
TAAACTCCTTAGCTGCTAAATCCTCAATCTAAACTTTCAAAGACACGATT
TTTTGTGACTGTAcgaaaattcatgatatgcaccatatAATATCAATATC
TTTCACATAATCACCAACTGATTGGTtacaagtgacgtattgactgattt
tactgGATTTTATGTCACTTACAAACCAATCAGATATTGGGAATGTAATT
TCAGAAGACATAGCAATGGCGCATATGAAATATACCACTGGAAAGTCTTc
taagaatttttaaaattttccacccaataatacgtcactttttctattct
ttaagtgacgtattgggtgaaaattctcggaagactctccagtggtgcat
atcatgaatagcttaATTCTTCACGATGATTTGAAACTCAGTATCACGTC
AATCAACTACGTTTAACATCTTTTTCCCCTTTCAGTTTTTCGAAGACAAG
AAAAAGGAGCGTAAAGAGAAACGGCAAGTAGCAAGCAAATTACAAAGCAC
ACACAAAGATCAGATGGTACGTAACCattattttcttgaaatgaGCTTAG
TAAcgctcaaattgcagatgtagaacgataaactcggtcTACAATCACTC
ACCATCTGGATAATGATATCACTTTatctcactaacattctgccgattgg
tagtgtgaaggtttcgatcacagactttcaccgcaatggactgtgtttGA
ATCCCAAGCTCTTCCAGAGAGGATGTTAGGGAAATATGTTGATAGACTCT
CCACCTTCACTCACATTATTTTCTTGGTTTCGGAACCTGTTTTCTTACTA
ACAAAAGTACGTATCACGTTTTATGGGGTAGTTACACCCTTTGCAGTTGA
GCTAGTCTTGGTTGGGCGTGCGTGAGAGGTGCGTTCCCTGAGAATGGCCT
GAGAAATGTCAAATAGCGACAACAGGTGACAGAGATagttagcttctgat
ttgtctagatcctgattgactgaAGAGCAGTTACTTCACCGtccaggggg
gggtcaagcctCAGGGTACTAAAGCATAGCCTAGAGAGGGTACTTatcta
aaaaaaactttgactcATACCACCCACCCAaataagtacccgggtactta
atGACTTTTCCCTTCTAGACCCTATACCAACCcaaaaagtacccgggtac
ttaaggACTTTTCTCTTCTAGACCCCATacctctttgtttttatttcaaa
atgttcgAACACTTTgttttgttatgattcgaaAGTACTTAGTGCTCTGT
TTACATTGAGAGATCAACCTTGTTCTCAAGTGATacattgtttctttttt
cttaactAGCTACTCGGCAATCATAATGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGCA
ATCATAATGAATGAGGACTTAGGTATTCATCAAAATGTTGTACAGTTACA
GTATACAAAAGGCAAAATATTATTTCCCAAGTAAAACGCAGGAAAAGCTT
CTTCAGGAGCTTTGCTTTCTTATGGGCTTCTGattcacaagcttctgata
aaAGATTCGAACGTCTAGGaaacttttcgaatgtttttgaagtagaaaag
aaaaaatgtaagagagagagagaaaatatATCAGTGAAAATAAACACTCA
GAAGGAGTTCATTACATCACTATATCACGTGAAAACATAATAGAATAGAA
GGAAAGGGAAACACTCAGATGGAGctcgatcaaaacaaacaaaacaggac
cttggctttcactttcacttcaaaacttttccctaaatttctttttcttg
gcaGGTCTTGTTATGTTTTGATATTACATCAACAATATAAagcaatttaa
aactttcttttcatCGATAATATTTTTATATGGCAGAATCATGTTTCTTT
CTGTTCTTCGtgtcaaattttatatttttaaccaTCCAAtgatggaataa
aaatgtcacaGGTTTTTAACAATACTTAAGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCTgcaccgtcctcaaaagtg
caaatacatgaACTCGATATTGTTCTGTCTTCGTGCACGCAAGGGGGAAA
TAAATTTCTTACacttttatttcgattttttttagtTCCAGAAAGAAGAC
AAGAGTGCGAAGGAAAGAAACGAGCAATTGGAAGTcgataaaaataataa
agagCTTCTAGTAAAGGAagaagaaattttccaaaattacgCTGATAAAG
TCATCACAAATGCTACCGATAATGGGCGTAACCCATTTCCTTTAATTAAA
GCCGCCCGAGAAGGTCCTGGTGGAGGACGTGGACCTAAATTTGAAGGTAA
TGCAGGTTTGAGGCCGAGTTATATAGTTGCTGACGCTACTGGGGTCCAAT
TACCGCATTATTTGAAAGACGAAAGTGTCGGAAATCGCGTTTACGGACAT
GTCTGTAAATCAGGAACCAGACTTGGATTCACATGGTAATTTGTACATGg
tacatttttctttcaattaattttttttatttccaaattttaatttctga
tatatttttatattataaaatCCTTGGAAATGATTAATTTATAATGATGC
CgtactgtatatatttttaatgaTTAGATATAATAGAATTTGAACATAAT
GAACATAATTGTCCTGTTAATTCGTAGAATGCTGGAAGCATAGGGAATAT
TCTACAGATAATTGACTACTTGTTGACTATAGGTTGCTGACCCTTTCACG
TCCCAGAGCTTTACACTTTTTGAAGACAAATTCAAGAGTTTTGCACGAAt
tttttatcaagttttttATCTAATTTCCACACACGGAGAATACTTTTCCT
TGCAAGGAGTGTGAGTTATCAAATACCGCAGAGAGTAATATGATATTTAT
AACTGAGGTGAATCTTGGACTTGCATGACAGTAAAAGAAGTTTCGGTGTC
TTCCATGTGCGTTGTGGTTGTTGTAAACTCTCCTTCGTAAATTTCATCGT
CTTCCTCTAAAGTCATGCTTTCATTCGTTCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015112XLOC_015112Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026894-exon-sc0000596-1491911889:4937..5126TCONS_00026894-exon-sc0000596-1491911889:4937..5126Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1510915933:4937..5126TCONS_00026894-exon-sc0000596-1510915933:4937..5126Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1575043694:4937..5126TCONS_00026894-exon-sc0000596-1575043694:4937..5126Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1491911889:10304..10362TCONS_00026894-exon-sc0000596-1491911889:10304..10362Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1510915933:10304..10362TCONS_00026894-exon-sc0000596-1510915933:10304..10362Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1575043694:10304..10362TCONS_00026894-exon-sc0000596-1575043694:10304..10362Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1491911889:10571..10780TCONS_00026894-exon-sc0000596-1491911889:10571..10780Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1510915933:10571..10780TCONS_00026894-exon-sc0000596-1510915933:10571..10780Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1575043694:10571..10780TCONS_00026894-exon-sc0000596-1575043694:10571..10780Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1491911889:11128..11247TCONS_00026894-exon-sc0000596-1491911889:11128..11247Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1510915933:11128..11247TCONS_00026894-exon-sc0000596-1510915933:11128..11247Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1575043694:11128..11247TCONS_00026894-exon-sc0000596-1575043694:11128..11247Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1491911889:11440..11556TCONS_00026894-exon-sc0000596-1491911889:11440..11556Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1510915933:11440..11556TCONS_00026894-exon-sc0000596-1510915933:11440..11556Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1575043694:11440..11556TCONS_00026894-exon-sc0000596-1575043694:11440..11556Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1491911889:12986..13074TCONS_00026894-exon-sc0000596-1491911889:12986..13074Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1510915933:12986..13074TCONS_00026894-exon-sc0000596-1510915933:12986..13074Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1575043694:12986..13074TCONS_00026894-exon-sc0000596-1575043694:12986..13074Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1491911889:13331..13508TCONS_00026894-exon-sc0000596-1491911889:13331..13508Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1510915933:13331..13508TCONS_00026894-exon-sc0000596-1510915933:13331..13508Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1575043694:13331..13508TCONS_00026894-exon-sc0000596-1575043694:13331..13508Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1491911889:14012..14086TCONS_00026894-exon-sc0000596-1491911889:14012..14086Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1510915933:14012..14086TCONS_00026894-exon-sc0000596-1510915933:14012..14086Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1575043694:14012..14086TCONS_00026894-exon-sc0000596-1575043694:14012..14086Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1491911889:14843..14886TCONS_00026894-exon-sc0000596-1491911889:14843..14886Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1510915933:14843..14886TCONS_00026894-exon-sc0000596-1510915933:14843..14886Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1575043694:14843..14886TCONS_00026894-exon-sc0000596-1575043694:14843..14886Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1491911889:16028..16148TCONS_00026894-exon-sc0000596-1491911889:16028..16148Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1510915933:16028..16148TCONS_00026894-exon-sc0000596-1510915933:16028..16148Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1575043694:16028..16148TCONS_00026894-exon-sc0000596-1575043694:16028..16148Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1491911889:16287..16358TCONS_00026894-exon-sc0000596-1491911889:16287..16358Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1510915933:16287..16358TCONS_00026894-exon-sc0000596-1510915933:16287..16358Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1575043694:16287..16358TCONS_00026894-exon-sc0000596-1575043694:16287..16358Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1491911889:16816..16899TCONS_00026894-exon-sc0000596-1491911889:16816..16899Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1510915933:16816..16899TCONS_00026894-exon-sc0000596-1510915933:16816..16899Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1575043694:16816..16899TCONS_00026894-exon-sc0000596-1575043694:16816..16899Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1491911889:17372..17452TCONS_00026894-exon-sc0000596-1491911889:17372..17452Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1510915933:17372..17452TCONS_00026894-exon-sc0000596-1510915933:17372..17452Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1575043694:17372..17452TCONS_00026894-exon-sc0000596-1575043694:17372..17452Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1491911889:20172..21070TCONS_00026894-exon-sc0000596-1491911889:20172..21070Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1510915933:20172..21070TCONS_00026894-exon-sc0000596-1510915933:20172..21070Clytia hemisphaericaexon
TCONS_00026894-exon-sc0000596-1575043694:20172..21070TCONS_00026894-exon-sc0000596-1575043694:20172..21070Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000596supercontigsc0000596:4937..21070 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.61869	0.491747	0.000311612	0.000804493	0.373207	0.315602	0.372683	2.07014	5.06335	10.1872	1.01381	6.01637	0.000626509	3.04151	0.00258715	0.210293	2.07292	0.274476	0.00149414	0.0828427	1.46969	0.000579978	0.766647	2.68609	1.1909	1.49253	0.00185913	4.50466	0.000789584	2.84928
Blast
[Close]
BLAST of TCONS_00026894 vs. Swiss-Prot (Human)
Match: CC173 (Coiled-coil domain-containing protein 173 OS=Homo sapiens GN=CCDC173 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.807e-21
Identity = 67/171 (39.18%), Postives = 107/171 (62.57%), Query Frame = 1 
Query:  148 LIMHGRREGQVKNG-----GLASELPRIGLMAQGINPNEVAVFQPKDWQRIQNNLARYNEASEKAEQKRRDRENLHAASKELVKHWENTIEGQRLKKXXXXXXXXXXXXXXXXXXXXXXXXXQAQKRKEAIERAKQQQYYETDRVKGFHGALLLTEVLKERDAQIAFKNSR 645
            L+  GRR G+ K           ++  + L+   ++  +V +    +W+RIQ++L R    +     +R+ ++ +H  S+E+VKHW NT  G + +KL+A+K R+E+ E ER+ +D+EE   +  KRK+AIE AKQ Q+Y+T+RVK FH  LLL+ V+KERDAQI F+ S+
Sbjct:    8 LVRFGRRCGRAKESTEIRNSEEDQVLYLPLLPSKVDLQQVTIIPHDEWKRIQDSLDRLTREAACLRAERKAKKEMHLRSQEVVKHWTNTYAGMKEQKLEAKKKRDEEIEAERQILDLEEEIYKQGKRKKAIENAKQYQFYQTERVKNFHSGLLLSRVMKERDAQIEFRKSK 178
The following BLAST results are available for this feature:
BLAST of TCONS_00026894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CC1735.807e-2139.18Coiled-coil domain-containing protein 173 OS=Homo ... [more]
back to top