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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026963 ID=TCONS_00026963|Name=TCONS_00026963|organism=Clytia hemisphaerica|type=transcript|length=2788bpRun BLAST on NCBI transcript from alignment at sc0000597:28742..70855- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026963 ID=TCONS_00026963|Name=TCONS_00026963|organism=Clytia hemisphaerica|type=transcript|length=42114bp|location=Sequence derived from alignment at sc0000597:28742..70855- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00026963 vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4) HSP 1 Score: 140.198 bits (352), Expect = 1.739e-33 Identity = 79/238 (33.19%), Postives = 130/238 (54.62%), Query Frame = 3
Query: 1125 LVTRLYIGYRFCEKKRPKFRRQ--GFKAQSTVHQLVDEDREVFQRASTDVFVLSSDRSLGDITCARLWHDNEEGD---WYLRDINVVDLQTNKKYKFVANRWVSIDKTNSTLYYTLTPHNEEELKSFLYIFKSKSMNDFSDRHLWFSIFNHPSKSNFTSCQRLSVAVSALFCVMTSSLMYFQNTPRTSIAVENSGVLHFTIEKLLIAFICMMVSVPINVLLVGLFRVIRPKSQKKRNS 1823
LVT +Y G+R K G + H L D D VF+R + D F+LS+ LG++ RLWHDN GD WY+ + V DL ++K+ F+ N W+SI+ + L E++ K F ++F K+ F D H+W+SIF+ ++S+FT QR+S S L C M +S+M++ + + G + FT ++++I ++ PIN+L+V +F+ RP+ K++N+
Sbjct: 1393 LVT-VYTGHRRGAATSSKVTVTLYGLDGEREPHHLADPDTPVFERGAVDAFLLSTLFPLGELRSLRLWHDNS-GDRPSWYVSRVLVYDLVMDRKWYFLCNSWLSINVGDCVLDKVFPVATEQDRKQFSHLFFMKTSAGFQDGHIWYSIFSRCARSSFTRVQRVSCCFSLLLCTMLTSIMFWGVPKDPAEQKMDLGKIEFTWQEVMIGLESSILMFPINLLIVQIFQNTRPRVAKEQNT 1628 The following BLAST results are available for this feature:
BLAST of TCONS_00026963 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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