TCONS_00026971 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026971
Unique NameTCONS_00026971
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1770

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026971 ID=TCONS_00026971|Name=TCONS_00026971|organism=Clytia hemisphaerica|type=transcript|length=1770bp
CAAAATACGATGTCAAGACAAACAATTACTTTCACTCAATCTCAATTTCA
AAGATCTTTTTGCGCTGTATAAAATGAAGTACAACCTATTTATTATCAGT
CATATATCAGCAAAAAGATCATCAGAGTCGTACGAACTAGACCATCAAAC
GCGCAAAGTCCCAGACAGCTATGGGTTGGAAGCTTTTAGTATTACTTCTG
CtatttgatgtggtttttatgaaagttatTATTGATAAAACAAAGTTAAT
GAAAACTGAAGATTTTGATAAGACAAATTTTATTGATGTCCGAGATTTAT
ATCAGAAGGAATCTGAGCAAATGGAGCGTCCGAGAAAAGACATTACTTTG
GCATTAAATTTACCATATACAAGGCCTCTTAGTGAATATCCTGTCAGGTC
TGATTTAAACGCTCCGAGATTTTATGCATCCGCAGCTGCAATTGCTATAC
AAGATATCAACGCTAATCCTGATTTATTAAGAGGTTATCAGTTAAAATAT
TATTGGAACAAAACTATTACAGATACGCACTGTAATGAAGAAACAGCTGT
TAAGAACTTCAAGAAACAGATGACAATGAATTTTGATGGATTTATAGGTT
ATCAGTGTTCATGTACGAAAGTTGGTCGATTGGCAGCTCAAGCAAATCTC
CCTCTTTTCTCAATGGGTTGTCAGGAAGAAGATCTCTCAAACAAAACACT
GTATCCAACATTTAGCCGCACGACAAACCTTAACCCTGATGTCTCACAAA
TGATCAAAATGTTTctcaagaaacaaaaaatcaaagaacTTGCTGTCATC
TACCAAAAAGATATGTGGATCCATATAGAAGGAAATGGAAATATAAACAT
GTACTGggaaaaaatatacaaagatttaaagaaaaatgggaGTCGAGATA
ATGGATTCAATATTACACTTAGCAAGGAAATCGCACATTACGAATATTTT
GATGATGAATATAATTCACAGATATTCGaatcatttttgaaagattGTAA
ATCGAAAACGAAAGTAATCATGGTTATGCTAGAAAAAGGACGACTTCAAC
ATTTTATGATGACGGCAAGGAAAATGAATATGACAAATGGAGACTACGTA
TTTATCGCCGTACACCCGTTCGCAACTGCGGAACAATTTCTACGTAACAC
GCAAACATTAAAAGATTACGTTTGGGTGTTACCTTGGAGTGGTTATTACG
GCGATGGCAATAAGgaaaaagcttttttcttcggagaaaaaaacgaaatg
aTGGAAGCGTTCTCGAGACTCTTCGTTATCCAACCAAAGATTCCACGATc
agatgaagattttaaaggttttcaaaAACGTGTAGTTGAGGGGATGTCAA
AAGAACCTTTTCAAAGTGATGCTTATGAGAGAActttcattggtcaaaag
aaaggGACAAAAGTCAGCCCACCACCGGAAGCTCACCAACTGTATGATGC
AGTCATGTTGTACGCTCACGGATTGAACAAAACGTTATCCAAAGGATACA
GCGTAACCAATGGATCTGATATCATCCAAAATATACTCAACACTCGTCAT
ATAAGTATGTTACATAAACCCCAACCTCCttccctgcgtattattagCTA
TTAAATGTTCAGTGATATGGCTAGATATTTCTCTAGCGTCTATTAGTATA
ATAAAGCCTGGATTACATAGGGAAGAAAGTTGGTATAAACCTATTTCTAA
CATGAGAattaaaaatttcccaaaatttttgTAGGGCAGCCATATAGCGG
TTGTCGCACGGTCTAAAGCC
Run BLAST on NCBI

transcript from alignment at sc0000597:147410..152056-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026971 ID=TCONS_00026971|Name=TCONS_00026971|organism=Clytia hemisphaerica|type=transcript|length=4647bp|location=Sequence derived from alignment at sc0000597:147410..152056- (Clytia hemisphaerica)
CAAAATACGATGTCAAGACAAACAATTACTTTCACTCAATCTCAATTTCA
AAGATCTTTTTGCGCTGTATAAAATGAAGTACAACCTATTTATTATCAGT
CATATATCAGCAAAAAGATCATCAGAGTCGTACGAACTAGACCATCAAAC
GCGCAAAGTCCCAGACAGCTATGGGTTGGAAGCTTTTAGTATTACTTCTG
CTATTTGATGTGGTTTTTATGAAAGTTATTATTGATAAAACAAAGTTAAT
GAAAACTGAAGATTTTGATAAGACAAATTTTATTGATGTCCGAGATTTAT
ATCAGAAGGAATCTGAGCAAATGGAGCGTCCGAGAAAAGACATTACTTTG
GCATTAAATTTACCATATACAAGGCCTCTTAGTGAATATCCTGTCAGGTC
TGATTTAAACGCTCCGAGATTTTATGCATCCGCAGCTGCAATTGCTATAC
AAGATATCAACGCTAATCCTGATTTATTAAGAGGTTATCAGTTAAAATAT
TATTGGAACAAAACTATTACAGATACGCACTGTAATGAAGAAACAGCTGT
TAAGAACTTCAAGAAACAGATGACAATGAATTTTGATGGATTTATAGGTT
ATCAGTGTTCATGTACGAAAGTTGGTCGATTGGCAGCTCAAGCAAATCTC
CCTCTTTTCTCAATGGTAAGGCTCTATTTAACCTGAAATCAGATCGTCAT
TGTTTTTTGCACACGCCTTCAGAGGTTTACCGTGCGCTAAGAAAATTATG
ACCATCTTTTATCAGGTTAGTCTCATTTGAATCGTCATTAACATTTATTT
TAGTTCTATAACCTCGCCCTTTTTTTCTAAATGGTTCACTTTGAGAGTGT
AAGGTCATCTGGTATTCAGATGGCGTATTGGCGGCCGCCAACGCTAATGC
TCTAAAGGAGTGGTCCAATAAAAGTTTGCCCGACCTTCAGAGTAGAGTGA
TGTTTCGTAGCAAATTTTCACATCTGTTACCAGATAAATGGTCAAAATCA
GTCAATCACGTCACTTTCAACCAAATAAGCTGTTGAGTCCGTGAAAGATA
TTGCAATAGTGCATATCATGAATATTAGGTTTCTGCGCATCCTCTAGCGA
AAAAAGTTTCTTATAGGAAGTATATCTATAGAGGTCTGCTATTAAGCCTA
CATGAAAACTGTTGATTATAGGGTTGTCAGGAAGAAGATCTCTCAAACAA
AACACTGTATCCAACATTTAGCCGCACGACAAACCTTAACCCTGATGTCT
CACAAATGATCAAAATGTTTCTCAAGAAACAAAAAATCAAAGAACTTGCT
GTCATCTACCAAAAAGATATGTGGATCCATATAGAAGGAAATGGAAATAT
AAACATGTACTGGGAAAAAATATACAAAGATTTAAAGAAAAATGGGAGTC
GAGATAATGGATTCAATATTACACTTAGCAAGGAAATCGCACATTACGAA
TATTTTGATGATGAATATAATTCACAGATATTCGAATCATTTTTGAAAGA
TTGTAAATCGAAAACGAAAGGTAAAAATGCTTCTGCAGCTCTTTTTGACC
TTTTCTTCATTACTTATAAGTACAATGCCTTTTCGACATTATCTTTTATC
AACCTTAAATACACCTTTTCAACCGTAGCCGCTAATTGCCGTGCAGGCAT
TTTTTTGTCCATTTTACCACCCTAAAACCGCCCCAGTCTTTTTATCGCAC
CTAAAGACAATAGAAAAAAGTGTAACAAAAGGATTGGATCAAGTTTAAGG
TGGTAAATTAAATAATAATATGGCACGCGCCTAACTGCGCGACTACGGTC
GAAAAGGTGTATACTACCTGAGAAAAAGTTTTAACCGACTACAATTTTAC
CCGACGAAAAGTTTTGCCCAACTTAAATACTCCAAATTTTCCTTTTTTAA
ATATTTTTGTGTTTTGTTTACTCAGTAATCATGGTTATGCTAGAAAAAGG
ACGACTTCAACATTTTATGATGACGGCAAGGAAAATGAATATGACAAATG
GAGACTACGTATTTATCGCCGTACACCCGTTCGCAACTGCGGAACAATTT
CTACGTAACACGCAAACATTAAAAGATTACGTTTGGGTGTTACCTTGGAG
TGGTTATTACGGCGATGGCAATAAGGAAAAAGCTTTTTTCTTCGGAGAAA
AAAACGAAATGATGGAAGCGTTCTCGAGACTCTTCGTTATCCAACCAAAG
GTAAAAGTAGTTTTTACACAAACCCGATATCTACGGCTAATTTCAAAATT
CATTGCAGTAGAGAGTCTGTTGTCATTGACTTTTCTGATTTGAGATTAAG
CATGATTTGAGCACAAAAAAGTGAGATTTTAGAAAATGGGAACTGCTGTT
ATTTCGAATCATTTTGTTAAGTAGTTGCTTCCCTATGTTATAGATTCCAC
GATCAGATGAAGATTTTAAAGGTTTTCAAAAACGTGTAGTTGAGGGGATG
TCAAAAGAACCTTTTCAAAGTGATGCTTATGAGAGAACTTTCATTGGTCA
AAAGAAAGGGACAAAAGTCAGCGTGAGTATTATTTCTTTTTTCCCTCATA
ATGATAAGTGTTAGACAATGTTATTGTTCCTTACAGTGATATTAGAGGCG
GAAAATATGGCGGTATGGCGTTATGGCGGTATACAGAGAAAAAATTGGCG
GGAGAGTTTCGAAAACTGAAACGGAAACTCAAATTCATACGATTTTGGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTCCGTCACCGAAAATTCCTTTGAAATTCAATATTTTTG
TCGAAAATTCCGCAAATTTTGAATATCTTTTACCAATTCCGAAATTCCGC
AATTTTTTTTTCTAAATTCCGTTTTTCCGCACTAAAATTGTCTAATTTTC
CGTCTCCGTCAGAGAACCCAATTTCCGTAATTCCGTCCAAATTTTCGCCT
AATTCCGCCACTCCGCCCGAAAAAAGGGCCGATTCCGCTCCTCCGGCAAC
CATGAAACCCCCCCCTTGTTAAGTAGTTGCTTCCCTATGTTATAGATTCC
ACGATCAGATGAAGATTTTAAAGGTTTTCAAAAACGTGTAGTTGAGGGGA
TGTCAAAAGAACCTTTTCAAAGTGATGCTTATGAGAGAACTTTCATTGGT
CAAAAGAAAGGGACAAAAGTCAGCGTGAGTATTATTTCTTTTTTCCCTCA
TAATGATAAGTGTTAGACAATGTTATTGTTCCTTACAGTGATATTAGAGG
CGGAAAATATGGCGGTATGGCGTTATGGCGGTATACAGAGAAAAAATTGG
CGGGAGAGTTTCGAAAACTGAAACGGAAACTCAAATTCATACGATTTTGG
ATGTTTTTGTATTTTGCACCGAAATCGTATAGTCTAAGACTGGCAAACTC
TACCGACTGTAAACTCTTTTCGACAAAAAACTGTTTGCGATTTTTCTTCG
GCTTTGAGCTTTTTTCTTAGATTCGTCTTAGACTATGAGCGTAGTCTAAG
CCGGGGGATGTTTATCGTGTATAAAATCCCCGCCTGAGAGTTAGCCCCAT
TTCTGTGTTTTAAGGAATATTATACCGAATAGGCTGAGTGAAAGTTTCGC
TTTTTATGTGGTTTTACTCGAAAAACGAAGTCTTTCTTATCAAATTTGTG
GAGCGGCAATGAAAACGATGTAAATTGAAACCTCAAGATTGAGGTAATTC
TCGGACGGGAATTTTATACACCATAAGCCATCGCTATATTAAAATGAATT
ACGGGGATGCAGTCATAGACTGGGGTGAAGGAACATTTGTTTAGGACAGC
AAATTTAAACGACACAGTTATTATGCTTTTATATCATACATCAGGTAAGT
GCTTTGAGGTAAAAATCTGCTCTCCTACGCAGATCGTTCTCCACCTCTGT
CTGCGCTACTGGGGATGCACGCAGTCTATGGCAGTACCCAACTAGCACAC
AACGTTTTTTCGACGTTTATCTAACGTTCACAACGTTGTGTGCCAGCTGG
GTAATATCTTTAACCATTATTTTGTTTCTTCACTTCCTCATTCAGCCACC
ACCGGAAGCTCACCAACTGTATGATGCAGTCATGTTGTACGCTCACGGAT
TGAACAAAACGTTATCCAAAGGATACAGCGTAACCAATGGATCTGATATC
ATCCAAAATATACTCAACACTCGTCATATAAGTATGTTACATAAACCCCA
ACCTCCTTCCCTGCGTATTATTAGCTATTAAATGTTCAGTGATATGGCTA
GATATTTCTCTAGCGTCTATTAGTATAATAAAGCCTGGATTACATAGGGA
AGAAAGTTGGTATAAACCTATTTCTAACATGAGAATTAAAAATTTCCCAA
AATTTTTGTAGGGCAGCCATATAGCGGTTGTCGCACGGTCTAAAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015140XLOC_015140Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026971-exon-sc0000597-1575043694:151392..152056TCONS_00026971-exon-sc0000597-1575043694:151392..152056Clytia hemisphaericaexon
TCONS_00026971-exon-sc0000597-1575043694:150537..150885TCONS_00026971-exon-sc0000597-1575043694:150537..150885Clytia hemisphaericaexon
TCONS_00026971-exon-sc0000597-1575043694:149857..150131TCONS_00026971-exon-sc0000597-1575043694:149857..150131Clytia hemisphaericaexon
TCONS_00026971-exon-sc0000597-1575043694:149535..149663TCONS_00026971-exon-sc0000597-1575043694:149535..149663Clytia hemisphaericaexon
TCONS_00026971-exon-sc0000597-1575043694:147410..147761TCONS_00026971-exon-sc0000597-1575043694:147410..147761Clytia hemisphaericaexon
TCONS_00026971-exon-sc0000597-1510915933:151392..152056TCONS_00026971-exon-sc0000597-1510915933:151392..152056Clytia hemisphaericaexon
TCONS_00026971-exon-sc0000597-1510915933:150537..150885TCONS_00026971-exon-sc0000597-1510915933:150537..150885Clytia hemisphaericaexon
TCONS_00026971-exon-sc0000597-1510915933:149857..150131TCONS_00026971-exon-sc0000597-1510915933:149857..150131Clytia hemisphaericaexon
TCONS_00026971-exon-sc0000597-1510915933:149535..149663TCONS_00026971-exon-sc0000597-1510915933:149535..149663Clytia hemisphaericaexon
TCONS_00026971-exon-sc0000597-1510915933:147410..147761TCONS_00026971-exon-sc0000597-1510915933:147410..147761Clytia hemisphaericaexon
TCONS_00026971-exon-sc0000597-1491911889:151392..152056TCONS_00026971-exon-sc0000597-1491911889:151392..152056Clytia hemisphaericaexon
TCONS_00026971-exon-sc0000597-1491911889:150537..150885TCONS_00026971-exon-sc0000597-1491911889:150537..150885Clytia hemisphaericaexon
TCONS_00026971-exon-sc0000597-1491911889:149857..150131TCONS_00026971-exon-sc0000597-1491911889:149857..150131Clytia hemisphaericaexon
TCONS_00026971-exon-sc0000597-1491911889:149535..149663TCONS_00026971-exon-sc0000597-1491911889:149535..149663Clytia hemisphaericaexon
TCONS_00026971-exon-sc0000597-1491911889:147410..147761TCONS_00026971-exon-sc0000597-1491911889:147410..147761Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000597supercontigsc0000597:147410..152056 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.022913	0.0444124	0	0	0.337598	0.157842	0.570849	0.588139	0.382577	0.460823	4.01886	2.01638	12.3002	17.0603	0.22291	0.338635	2.28579	5.65656	19.398	45.572	34.8606	35.3787	8.61593	13.5023	32.8744	25.0477	3.03659	3.18121	4.14231	5.03948
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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