TCONS_00026975 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026975
Unique NameTCONS_00026975
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026975 ID=TCONS_00026975|Name=TCONS_00026975|organism=Clytia hemisphaerica|type=transcript|length=3286bp
AAAGATGGTAGAAAAGCAGTGAGGATTTTTCAACTCGACTTTTACTGGAC
ACTTCAATCTCAGGTCTTCGTTTTCACAATCGATTTACAAATCTCTTCAA
CTTACTTTTGCTCATCATTTTACAGATTTATAACAGTTCACATCCTAGTC
TTCATGAATTTGATAACCAAAGAAGAATAATAAAAGTCAGCGTTAAAAAC
ACAGCAACAAAATGTTGGCTTTGAATTTGAGCCGTGTAGACTATCTTCAG
GTGGGAGTAACGTCCAATAAATGTATGAGTGTTATTCCCACAGCAGGTGG
ATCTTCATCCAAACCTACCACTCAGCGTATTGTAGTTGGTGATTATGAAG
GGGTTGTTACTTGTTTCAACATCAAGAAACATGTACCAAACATCTCATTC
AAAACTTTACCgctaaacaacaaaatattaCGGTTATGCATGGGAGCAAG
AGCTGGACCGCTTATGGAGAAAGTTTATGTATGTTCTGGAAATGAAGTTT
ATGGTTTCAATAAAAAGGgaaaaggttttttgaaatttgatagtAATTTG
ACTGAATCAATTCAAACAATGTATGCTGATAACTTGGATTTGTATCTTTG
tggaaaatatatttgcaaTCATTATCATGATTGCATTGATTCAAACTACT
ATCTTTCACCAGATCTAATCAATGATattgtagttttgccagaatcTGGT
GGTCACAAACCAATGCCTATCTTAGCATGCCAAGACCGTGTTTTGAGAGC
TTTGAATGGATCTGACCTGTACTATGAAGTAGAAATTCCTGGATCGCCTT
CAGTAGCTGTTCTTGGAAGTCAAGCAGAGAACGGTGCTGATAGTGTTGTA
TATGGTACCGCCGATGGCAAAATTGGTTTAGTGCAGTTGAATGCCAGTGC
TCCAGAGCATGTCTGGGAGATCGGTAATGAGAAGCAATCTGGTGATGTTT
TGTCTTTGGATCTCTATGACGTGTCCAGTAATGGCACCAAAGATTTATTA
GTTGGGCGTGCAGATGGTGTGATTGAAGTGTATGGTTTTGACGAGGGAAG
TAATCCATTTCAACATTACAAATATACACTTTCAGAAAGCATAACTGCAG
TTTCTGGCGGCTCTGTCTGTGCTCCTGGGTATCAAGAGGTAGCCGTTTCT
ACCTATACTGGATGGATTCTTGGTCTAACTTCAGAACCACAGCAAAGACA
GACTGGTATGCAAGGTAGTAACACAAATGACCCTGTGACAGCCGAAATCA
AACAGAAGATCACAGACCTCAATGCTGAAATTGAGGAACTTCAAGGCCTT
GTGCTTAAAGAACGCGATAAGTATCAACAAACTGCTAATTCTAAAACAGC
CGTGTCTGCAGTACCCATGTTTGAAATTAATGATCGATTCCAGTTGAATC
ACGGGGATGCCAGCTATACATTGAGCATTGAAGTTTTAATGCCCATTGAT
ATCATATTACTTCAAAGCGATGTACCAGTAGATCTGTTGGATGTTGAGAA
GAATTCAGCGGTTGTTTCTTACAGTAGTTGTGATCCGGAGAGTGGTAATT
TCTTATTGGCTACCTATCGTTGTCAAGCAAACACAACAAGATTGGAGTTG
AAAATCAGGACAATTGAAGGGCAGCATGGACATCTACAAGCCTACATTAC
GCCACGCCTTCAGCCCAAAACATGCATTATGaaacaatatcaaatcaaac
cTTTATCGTTACACCAGAGATCTCATGTTTTTGACCAAGACAGACCTCAC
AATGAATTGAAGCTAAGTGGACAATTCAGTCAAGCTGAAATACATTCCTG
GGTTTATCACGCCCTACCGGAAGTCCCTGAAAGAGTTCCAATGGAAAATG
AGATTTCCTTTTactttgtttcaacgtttttggaCACTCAACTTGAATGC
CGGTACAGCAAAGGCCAAGCAACATTTCGTTCTGACAACATTTCCACCAT
TTCCATCTTGAAAGACGTATTATCAAAGGAAGCTACGAAACGAAAAATGA
ATCTAAACATATCTTGTGATCTCAACGAAGACTCCATTCCTAATGTTTTA
TACAGAATCCACCCAAAGCTTGAATATCAACTTCTCTTAGCAAAGAGGGT
CCAACTAATTGATGGTCTAAAGGAGCTGGAAACCTATGAGGGCAATGTGG
ATTTCTTGACAGAGGAATACcgtgaaattttggaaaatgcTGATATTCTA
CAAGCAGAATTCAAGAAGCAGCCTTGTCATTTGGAACGTCTCTACGGAAT
GATTACAGATTTGTATATTGACCGACATAAATTCAAAGGCcagaatgtga
aaaataaagtcTCACAGTTAATTTCCATTTTGGATAACTATGACTTGGAT
TCGCTCTTAGAGTTTTTTCAAGAATCTTGATATagtttaaaaagtgaaaa
tgagGTACTACTGATATCCTAGATGAAAATATTTGTTGCAAACTTTTAGA
GCATTTGTCGATACAGAGGATTTCAAATtgctgtttgttttttgtttttt
tttgcatggAAATAAACCTCTAGGGACAAATAATGATTGATTTTCTATGG
TGAGCCTCTTCTGGGTTACCAGTAATCAAAGATCAACacctttgattttt
aaggcacGTATCAAATGGGTGTTTTTTTAAAGGATGGAACCAAAATATGA
AATTGCGACGAGTTTTAAAGGCGTGATTGATCTACTGATGTGaattaagt
tttgtttttatttcggGTTTTTATTCAGACTTAGATGCAAGTTTTCAATA
GagaaaatagattttaattGCTAAACAAAGTCTCttgcaaaattttgaat
tttagaaaatttgtcaagcgaaaatgaaaacaagataTTTGATTTGTTGC
CATtaataaaacatattttttccaaTGTATCTCGTAGTGTCTCTAGCTAG
CCAGGTATTGTGGAGCAGTGGAaacttttcacaaaatttaatgtGAAAAT
GCTACGTTTCTAACATCATTATGTTAAAATCAGATAATTCAATAATATAT
tacgatttgaaatttttagcaCTTGTACATAAAAAACgatatattataaa
ttattctAGCCATAGGGGTGTGTAACATGCACATATTAAACGTGTGGTTT
TTAAAAGCAGGTCTGAAACTTGTAtataatattgtaaaaaatttgtCACA
AAAAACTGTATGATAACAGACTAGTATTCATAGTATTAAAGccttccaag
aattttcaaaattttccacccaatacgtcattttttctattgtttaagtg
acttattgggtggaaaattttaaaagttctcagaag
Run BLAST on NCBI

transcript from alignment at sc0000597:188332..208141-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026975 ID=TCONS_00026975|Name=TCONS_00026975|organism=Clytia hemisphaerica|type=transcript|length=19810bp|location=Sequence derived from alignment at sc0000597:188332..208141- (Clytia hemisphaerica)
AAAGATGGTAGAAAAGCAGTGAGGATTTTTCAACTCGACTTTTACTGGAC
ACTTCAATCTCAGGTCTTCGTTTTCACAATCGATTTACAAATCTCTTCAA
CTTACTTTTGCTCATCATTTTACAGATTTATAACAGTTCACATCCTAGTC
TTCATGAATTTGGTAAGTCCAAGTTTCAGAAGTTAATAATTGCATTTTGG
CGACCGAAATTTTTTTATTCAAATTTTTCACTTACTTTTTTGAAAATCCT
TTTCAACCAACGCTTAGACAACTTTTAACGTGCTTTTCGTGTTTGTTTTG
ATTTTATTTGAGGCAATCTTCTTAGACTAAGAAATTTGAAGACAGCGGTA
CTAGTGCCAAATTAAATTAGCGACTCACTCCAGAAGTCAGGCAACTTTCG
TTGACGTCAAACCGACCAAATGTTTCATTTTTCCGTGAATTTTGAACCCT
TCTAACCTTAAAAGCGTTCCCGTTTTTACTAAAAGCCCCTGATCGTAGCT
TTCCAGCGGTATATAACACTGTGGACCTACTGTGTGGACTAGGGCTAGGC
TAGGCGGCAAATTGGGGGTATAGACAAAACGGCTGAACGGCGGAACGACG
GAATGCCGGAACCGGAATAGCTGTTCCGGCCGGAATACCGTGAAAAAGGG
TAACTTGCATCATTGGAGGCTAACATGCATAGCCCTCAAATGAAAGACCC
AGCTGGTCATTAAAATACAAAAATAAATCAAAACAAAAATGGTAGAGTAG
AGCTGCGAGCGGAGCTGCGTAGTTCTATTTTTTTAATGACCAGCCAGGTC
ATTCATTTGAGGGCTACCGTGAGAGGTCCTAAAGCCGACAGCCCAGCCTA
AAGCCGATGGGGGTCTTTCAAAGATACAAACTAAAATAAAAACAAACCTT
TCGCTGTGATGCAACGAAGATACCAAAGTGTCAACTAAACTGAGAGATTT
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TGTTTGTAAACATAGAATTTTTTTTCATAACAGTTATTTGGGGGGTCAGA
ATTAGGCTGGGCTGTCGGCTTTAGGACCTCTCACGGGTATGCATGTTTGC
CTCCACTGATGCAAGTTACCCTTTTTCACGGTAGCTATTCCGCGGAATAA
TGATTTTTTTTTATATTTTGTATTCTGCGGAATATGATTATATATTTTTT
TCCATAATCACCTACAATCAGCAATCGGCTACCTTTAATACACCTTTCCC
AGGATGTTGTTTGGGATTTTATGTTTGAGTGTTTCCCTTACATATAACTA
ATAAGATATAATTAATTACATGAAAACGAGACCTGGCTGTATATGGAGGG
CTGTAGAGGCCTCAAGTGGGAAGTTTATACAACTCGTGAACCACTTGGTG
CTGACGTACACCTTCAGCCAAGTCTAAAAAAATATGTCTGAGGGGTCCCT
ATTGAGCTCTGGGCCAAGTCAAGCTAACGAAGGTATGATATGACTGAAAA
TTTTCAGTAAAGTACGGCTAGAAGTTGGTCCAGTGGTTTAAAGCGTTGGT
TTCACGTACTAGGGATCCCCTGATCGAAGCGGGTCAAAATCACCTTTAAA
ATTTTATCCAGGTTTTGATGTTTCATGTTTTTTTGGGTGTAGATTCTGAA
AAAATAGGTCTGAAGTCCTGAAAAGTTGACGGAAGGGCGCTATGAGACCG
TAAAGGACCCGTACGGGACCGTGAATGATCCCCTCCCCTAGCGCCGGACT
GGGTAGGTCTCACGACTTGAAACTTTCTGGAGACGTCAAGCATATCGAAG
GGGGGGGGAGCATGCCAAATTTCATCACTCCACTGTTACCGGTCGCCAGG
CTACGGGTCGCGCAAGGTATGCTGCAGGATGTCCCCGTACGGACGATTGC
CGGGTCGTACGGCATTTTTAGCCGGTCAAATTTTCCGTGAGGTATAATTA
ATCTAGTTCTATCTTAGTTATATCTAAGGGAAACACTCAAACATAAAATC
CCAAACAACACCCCGGGAAAGGTGTATTAGAATCACAAGCGAGTGCACGA
GTGCATTCCTTTATATACAAAAAACAGCCAATGAGGTAGCCGATTGCTGA
TTATAGGTGATTATGGGTGGTAATGGGCAGTGGCGTGGTGGGAAAATTAC
TCTGGGTGGCCAAGGCAAATATGGCGCCCTTTTTAAAGATTTTTGTTTTC
GGTGCCCCTCTCTATACGTTCATTATGAACAAATAAAAGGGAATGTGCGA
GCGAAGCGAGGCAGAAAATTCTGAGTTTTTGAGGTGATGACTGAGTTTTT
GAGGTGATGAGGGGCGCCATTTTTGTTTTTTCATTTGTCAATCTTTCGAT
ATGGGCGCCTGAAAAATCTTTCTTGGCGTCCCTTATTTTTGGGCGCCCCT
TCTCAAAAGGGCTCCGCTGGGGGGCCTGGCCCCCCTGGCCCCCCCTGCCA
CCACGCCACTGGTAATGGGTGATTATTATGGAGGATTATGTACATAGATA
TACCCTCAGGGGTGATAAAAGAGAAAGATTATTATTATAATAAAAAATCA
NTGGAGGATTATGTACATAGATATACCCTCAGGGGTGATAAAAGAGAAAG
ATTATTATTATAATAAAAAATCATATTCCGCGGAATAGCTATTACAAAAA
ATAAGAAAAATAAAACAAAATCATATTCCGCGGAATAGCTATTCCGGCCG
GAACAGCTATTCCGGTTCCGGCATTCCGTCGTTCTGCTGTTCTGCGTTTT
GTCTCCACCCGCAAATTGGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TTTTTGAAGTGTGATCTCAAACTCCGCCGCCGCCGCCGGAGATCGTGGAT
ATTCTGCGGAGCTTCGCATTCTCCGCGTTTTCTTGTGTTTTTGAAGTGTG
ATCTCAAACTTTGCCGCCGCCGCCGCCGGAGATCGCCGATATTCTGCGGA
GCTTCGCATTCTCCGTGTTTGCTTGTGTTTTTAAGTGTGATCTCAAACTT
CGCCGCCGCCGCCAGAGATCGCGGATATTCTGCGGAGCTTCGCATTCTCC
GCGTTTTCTTGTGTTTTTTAAGTGTGATCTCAAACTTCGACGTTGCCGCC
AGAGATCGCGGATATTCTGCGGAGCTTCGCATTCTCCGCATTTGCTTGTA
TTTTTGAAGTGTGATCTNGACGTTGCCGCCAGAGATCGCGGATATTCTGC
GGAGCTTCGCATTCTCCGCATTTGCTTGTATTTTTGAAGTGTGATCTCAA
AGTCATCAAGCAATTCTCGACTATAACTCGAAAAGTTTAATAAGGCTTGT
GTTTTAGAAGACAAAATATTGAAATTAGCATTTTAAGATTTCGATTATTG
ATATTGATTTAATATTTTGAAACTGAAACAAAATTGCCGAAAAAATATAA
TAACTAATTACGCTTTCATTGATAATAAAAACATATCGAGACAAATAAAC
AGTTTTCACAATAATTGTTAACTATGTCAAATGAAAAGAGCCTATAAAAG
GGTACTCTGGGTACCTGATAATCGAAGGGGTTGGGGCGGGGTTGAAAACA
ATCTCAAAAATTCAATAAACTAGGGGGGCTGGGTGGAACATTTTTGAAAC
TGAGGATAATACAACAGATTTAGGGCAAAAGAGAGAGCTTTCAAAAAAAA
AAATTGGGGATCTCGGCTATTAGGTACCCGAGAGGAAAGTGTTACAACAT
ATATAATGTAACTTATACCATGGTCGTAAAAATAACCATTCGTGCTGTAT
GTATAAAAATTGTATTCAAACATCGAAACGTTTTGTTAGTCTTTTATTAA
ATGCGTGGTCGATCAGTTTAAAGAACATTAACCGTTTTCCATAACTCATT
TTTCTCGTAGCAAACTTAAACGGATTAAGATTACTGAAAGATTGTTCAGC
AACTTCAGTGTTCATTTTGTTAACATGTGAAAACTTTTCTAAATCTGGAT
GATACGCGCAACGAGGGTCGTCCAAAATACACTTCGGTTGTGTATGCTTT
TCCACGTGGAAAGAGTCTACTATGTAACTTAATCCTCTATAATTATCTGC
TGATTTATTACCTTCGTCACTCAAACGATTTATAAAAGGGTGCAGTTCAC
ATGCTCTGTCATATACAATTCCTTTCAAATTTTCTTTCTTAGGACATGAA
CCGAACAAATCTAAAAGATAGGTGAATATGCTTGATAGCGATTCTGCAGT
GTACATTTCATAATTACACAATTTGATGCCACAAGAACGAAAAATATAAA
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TTTTTTAAAGTGGCGGTCTATGGAGAGTCTTCATTTGATGAAAACGCAAG
AATTTTTTACATCTATCCGGAAATTCAATATACCGACGTTTCCTTTGTTA
TTTCAAACAGGAACTAGAAACTTCGCATTGGAGCTGTCAAGTTGAAGACC
GCGGGCATGCCCCTTGAATGTTTTGATTGCAATGTAAAGTCTTCTTTTTT
TTTCTCTGCGTCTGGAATGTTTTCATTGCAATGTAGAGTCTTCTTTTTCT
TACTTTCGACTTTGTTGGTCGCAGACTGGACGTCTAATTTTGAAACTGAT
TGCATCAACTTTTTTATCAATATTTCAGACAAAGGAAACTGTGTTGAGCT
GATTTTTACAAAAATGCTTTCTAACATACTCATCGTTTTGGACAAGTATT
TTTTGGAGTGGGAGTTGAAGCGTTTTTTCTTTCAAAATGTTTTTGTCCAC
AGGTAGCCATTTTTTATTTTTTTCAAAAAAACTAGGTTTTTTGTGTGCTT
CTGTGCAAAGTTGCATCTTCCAGATTCTACTCATTCTTTTCTAGAATTAT
TTTTACAAATTTAGGAAAATAGGTCAAGGCAGATAACTACCAAAAGAAAT
TTTCCAGAGGTTTGTTTTTGTATGACTTTTCTGGGTTCAAAGATGTTCGG
TTGCTAACTAGACCAATCACCACCTGGGCAGGGGACTCTATATTGACTTA
TATTGTTTCGGAAAGCAGATAATAGCGTAATAGGCTATTGTAATACATTT
TTTTGCTCAGAATTTCATGCTCTATCAAATGGTACGAATTATTTTCGTTT
ATTTGACTTTTGAAAATAAGCTTTTTCCTACCCCTTATTTTCCCTTGCAG
TTTTGCCTATGGCGTCACTATTTTGGTCATAAAAAGTTTTCCTTGGCCTA
ATCTGCGTCTTCCCTCTCAAAAATATCTTGTAATCTACTGTTCTTTGGAA
TAGACTAAAAATGGTTTGGCCGTAAAAAAGATGTCATAGAATCCAGGCTT
AGCCCCCTACTATATTAAAAGGGGGTTCTAAAATTTTTGAAAAATTAACA
AGTGGGTGGGTCGTTTATTTGGAACCTAAGACCAGACGGTAGAGTCAAGT
TACCAGTACGCGAACGGCCCCAGTGCACGAATGAACGTCTTTGAACTTGA
AAAAAACAACCAAAAACAAGCTTCAATAGAATTCCCTTTGTGTAGCAGAA
TCCTCAAACTATCCCTTGCAATCTGTCCAAAAAATAAAATAAACAGAGCA
CTAGAACGACACAAAACCAATTTTGAATGAGGCCAAGTAAAAAAAACCAC
AAAATTCCTAATTTTTGTAAACATGGCTGATCGCAAGAGGAAATGTTTTT
TATCATAAGATTTGCGCAAGAAGAGTTCTAAAAATGACTTTCCTTTTTTA
AAAACCGGTTATCTTCCATCACACAAAATTTTATTGAAACATGTTAGTTC
ATTAATTAAAAATCAATAGAAACATATCACCAGTAGTTGATATAAAATAG
GGCCCAGTCTGCAAAATGATCCAAACACCATATTCGAAATGAAGACATTG
CAACGTCAAAACATTCCAAAGCTGGTGATCTCAATTAAAAAAGAAGACAC
TACATTGCCGTCATTTTCGATGAGCAAAATATGAAAAAGAAAACAAAAAA
TGGACGACAAGAAAATATTTACAAAAATAAACACGTTCGTAAAACGCTAA
AGTTCTTATAATAAAAAAGACGCTTTTTTAGTGAAAAAGCGTATGGTTTT
GAAAAGTTCAAATACTCCTGTATCATCTTGGAGGAGAGTTAAAGTATTAC
CTGCGAGTGGAGCTCTAATTTTTTCTTGCGAAAGATCGTTCGCGCACTGG
TTCCTCGTTTGCGGACTGGGTTCGCATAGCGCTCGCTTTAACGACTTATT
ATTCCAAGAAAGAGCTTTCAAATAAAGTGAAAACAAAGTGAAAGAAGGAC
TTCAAGCTCATCTACGAGATGGTCTAAAAGGATTTATGTAAAAACCAAAA
GTAAGTGAGAAAAGTGAAAAATGAGTTTGGCCTTCGTGCATTGGGCACCC
CCTCTACTAATCGATAAATTCGATTATCGAAGTAAACGATAATGCTCGAA
GTAATCGAACGACCACTTATCGGTTAACAATCGAACAACCACTTATCGAT
TAACAATCGAATGTCGAGTACCAAAATTTCAAAAATATTGTGAGTATTTG
ATCACTTTCTTAACAACCCTTCGAAGACTCAATAACCGTTCGAGTACTTT
GATTGTTATTGATTACTTTCGATAACTTTGACAGCTTTGATAACCAATTG
ATTACTTCGATAACTAATTACTATGATTATCTTGAAGAAAAAACAAAAAA
AATGACCTAAAACCAAAGCACAAAAAGAAGCCCCCCCTTATTCCCCAGCC
ATTTCGCCCGCCGTTTTGTGTGTCTTCGCCCTGGGTTTCCTCTATTACCT
CATATCGCGCGTTTTGATTGGTCAGAGAAAACGAAAGTGGTTTTGGCGCG
TTCTGATTGTTTGGAGAAAACAAAAGTAGTTTTTGCACGTGAATAAAATA
AAATTGGTTTCAGATTATTTTGAGGCGCTGCTACTGGAAACATATTTTGC
GTGTGTGTGTGTGTATCGAAGGCTGGAAGGTACTCAATACAATCGAAAAG
TAATCGAAATGATTGAACAAATCGAAAATGGTTGAAGAAAATGCCATAAT
CTGGAGTCGAGTAAGTATTCTAACACCGATAAAATCGATAGGTGGTCACT
GACCACCTTCGATTATTATCGATCATTATTGATTACTTCGATCACAATCG
AACATTCAATTAGTACCGTCTGGCTAAGAGTAAAGGTCTATGCACCTCAA
ATATGCTATAAACAAATGCAAAAGATCTTTGTTTTTATTGAGTTGCTTCT
AAGGCAAACATGAAATTGATATGATCAGAAAGTTAATTCAATGTTTTATT
CAATCTCATTTGTAAATTTTGTGGTTTTGCTCTGGGAGATTATTCCAAAA
CCTTGGGAATATTAGGTATTTGTATGTGTATGTGATGGCACTATGTCGAG
GCCGAAATATTCAGAATAAAGATCATTGTAAAAACACATCCTTTTAAAAA
CCTTGGATGGGATTAATTTAATTAAGTAAGGGTTTCAGTCATTTAGATTA
AAGCCCAAAGGGCTAGAGTAGAATCTCTAAGCTTTTCCAGGCAAGAAAAA
GTGAAACCACTTATTTCCCATCCATAACGCGACTAGAACGCGCTGCAATC
ATGACGACGGATTTTATCTAGTAGTTCCTTTGTTTTTGAAGACTGCAATT
CTTGAAATCTAGCAATAGATTTAACTTTCAATCTGGCGTTTGTGTAAAAA
CCACACGCGGATGTTCTGGGCGAAAAATAAGTGGCTTCATTTCCCATCCA
GGAGTCTCGAGTCTAGCCCTTCAGGCTTGGAAGTAAGGGTTTAAATCCCC
CTCTTTTCATTTATTTTTGATTAATTAATTTTTAACACTGAATAAAGAAA
GAAGAAAACGATGTTACATGTAGTAAAAAAATTCGTTTTCAAGTACGCTT
GTCAACCATTATTTTATGTTTGGATTACTCATGCAAGCTATGTCACAATC
AAGATTACATATCTTTCACTGATGGCTTCGGTTAGGGGTATATCTGGCAG
GAAGGAGATAAAACAACAAACAGGACCTAAATCAACAGTGTTGTTTTTCC
CTGATAAAAAGCAGTTATGTGGATCACTTGTGCAACAATCCAAGAAATGT
CCAGGATTAGAGACTTGTTTGTTTGGACATAAAGAAACATCACTTTGGAA
ACTGATTGATACACTTGAGTCAAGTCAATTTAAACTTGATGTTTGTGTTT
TCGTAATAACTTCACAAGATTTAGCAGACATTCTGATTAAGAAACACAAA
GAGGGTATTATAGTTCGTATTGTGACTGACTGTGAAAAAATGGACCTGAA
TTGCTCACAAATAGAACAAATGCGTGCCAAAGGTATACAAGTACGACACG
ATAAAACTTCATATTTCATGCATCATAAATTTGCCCTTGTTGATGATAAA
TTTCTTGTTAACGGCTCTTTTAATTGGACTAAACAAGCAATAACTGGGAA
CCAAGAAAATGTGATCATATCAGCTGAGAAAGATTTGATCACACCTTATA
AAAAACAGTTCGAAAAACTCTGGAATATGTATAAACCGGGTTCTCAACAG
TGACTTAAAAAACTTTTTTACATTTTGTCCAATATTTTTATTGTGTATAT
TTTAATTTTTAATATGTAAAATTACATGAAATTACAATATTGAATAAAGT
GCTTTATGTTGTAGTTGAAAAAAACCTAAAGATTTAGAAGCCCTATATCC
TCAATTGAACTTTTGTTTTGAAAATACTACGTTCAGTACATTAAACAATG
AATTATTTTCTATTCTGTTTAGATAACCAAAGAAGAATAATAAAAGTCAG
CGTTAAAAACACAGCAACAAAATGTTGGCTTTGAATTTGAGCCGTGTAGA
CTATCTTCAGGTGGGAGTAACGTCCAATAAATGTATGAGTGTTATTCCCA
CAGCAGGTGGATCTTCATCCAAACCTACCACTCAGCGTATTGTAGTTGGT
GATTATGAAGGGGTTGTTACTTGTTTCAACATCAAGAAACATGTACCAAA
CATCTCATTCAAAACTTTACCGCTAAACAACAAAATATTACGGTTATGCA
TGGGAGCAAGAGCTGGACCGCTTATGGAGAAAGTTTATGTATGTTCTGGA
AATGAAGTTTATGGTTTCAATAAAAAGGGAAAAGGTTTTTTGAAATTTGA
TAGTAATTTGACTGAATCAATTCAAACAATGTATGCTGATAACTTGGATT
TGTATCTTTGTGGAAAATATATTTGCAATCATTATCATGATTGCATTGAT
TCAAACTACTATCTTTCACCAGATCTAATCAATGATATTGTAGTTTTGCC
AGAATCTGGTGGTCACAAACCAATGCCTATCTTAGCATGCCAAGACCGTG
TTTTGAGAGCTTTGAATGGATCTGACCTGTACTATGAAGTAGAAATTCCT
GGATCGCCTTCAGTAGCTGTTCTTGGAAGTCAAGCAGAGAACGGTGCTGA
TAGTGTTGTATATGGTACCGCCGATGGCAAAATTGGTTTAGTGCAGTTGA
ATGCCAGTGCTCCAGAGCATGTCTGGGAGATCGGTAATGAGAAGCAATCT
GGTGATGTTTTGTCTTTGGATCTCTATGACGTGTCCAGTAATGGCACCAA
AGATTTATTAGTTGGGCGTGCAGATGGTGTGATTGAAGTGTATGGTTTTG
ACGAGGGAAGTAATCCATTTCAACATTACAAATATACACTTTCAGAAAGC
ATAACTGCAGTTTCTGGCGGCTCTGTCTGTGCTCCTGGGTATCAAGAGGT
AGCCGTTTCTACCTATACTGGATGGATTCTTGGTCTAACTTCAGAACCAC
AGCAAAGACAGACTGGTATGCAAGGTAGTAACACAAATGACCCTGTGACA
GCCGAAATCAAACAGAAGATCACAGACCTCAATGCTGAAATTGAGGAACT
TCAAGGCCTTGTGCTTAAAGAACGCGATAAGTATCAACAAACTGCTAATT
CTAAAACAGCCGTGTCTGCAGTACCCATGTTTGAAATTAATGATCGATTC
CAGTTGAATCACGGGGATGCCAGCTATACATTGAGCATTGAAGTTTTAAT
GCCCATTGATATCATATTACTTCAAAGCGATGTACCAGTAGATCTGTTGG
ATGTTGAGAAGAATTCAGCGGTTGTTTCTTACAGTAGTTGTGATCCGGAG
AGTGGTAATTTCTTATTGGCTACCTATCGTTGTCAAGCAAACACAACAAG
ATTGGAGTTGAAAATCAGGTAGGATGTGTTATTGTTGTACCTTAAGTGGA
TTAATTTTGGCGTGTATTAATTTTCACATGACCGAATCAAGGGTCTTCAA
AATTTTCGCGGGGATTTAATTCGCGAAAATTAATCCACTTTAGGTAAGTT
ATGACAGTTTTAATTACAATACTTAACGTAACACGTAACTTCTTCATTGT
GATGAAGGCAAAGGTAAAATACTTTATAAGGGTTTCCTTCTTGTGGTATA
CCAATGCAAGCAAATTGTTGCAAGATCTGATGGTCTTGTTTGATTCACCT
TCTGTAAGCAGTCTTATAATTACAGAAAGGTATACTTTTTATATAAACAA
AAGGATCTTTCAACCATTAGTATTGTAGATACATGGTTTTGAGGGGGGTG
TTAGGAATAAAAGCCTCAATGGTCATTGAAAATGTTTTAAAATGTTTGAA
ATGTTTTCATCAATGAAACGAGGGGTAATANCTCCGTCGCAGAAAAACAC
GCATACATAAACTCGGTAATGCTTAAAAAAATCTTTTTGGAACAGGTCTC
AAGGCTTAGTATGATAGTCGCGACCTTAATTTCACTTACCAATAGACGAT
ATCGGATTTAGATAAATGCAATGCATTCTGGTTTCTAGGGACTCTCCAAG
GAATTATAATAGATCAATTATAATAGATTATAATTCCTTTGAGAGTCCCT
AGAAACCAGAATGCATTGCATTTATCTAAATCCGATATCGTCTATTAATT
CCGAAATCACCTAGCTTTTCCCTTTATTTTTAAAGTTTTTAAGTCAACTC
TGGTAATAATTATTGGTAATGTTATTTTCAAATCTCTCAACTTTTGGAAC
AGGACAATTGAAGGGCAGCATGGACATCTACAAGCCTACATTACGCCACG
CCTTCAGCCCAAAACATGCATTATGAAACAATATCAAATCAAACCTTTAT
CGTTACACCAGAGATCTCATGTTTTTGACCAAGACAGACCTCACAATGAA
TTGAAGCTAAGTGGACAATTCAGTCAAGCTGAAATACATTCCTGGGTTTA
TCACGCCCTACCGGAAGTCCCTGAAAGAGTTCCAATGGAAAATGAGGTAG
AACTGATATTCTGATTTAAATATCGTTGGAAATATTTGTATTTTTGTTGA
TAGAGGGGACTATAAATCGAAATTAGATTTTTTGTGTGGAATTCACTCAT
GAAAAATAATCGTTAAAAAATTATAGTTTTTTTTCGTTTTTTCTGGATTA
AGAAAAATTGATTATCGATAATATTCATTAGAACCTCCATAACTCGAACC
CACACGGGGAAAATTCGAGTTGTGGGATAACGTTTATAAGGCATTGTTAA
CTGAAGGGACGATAAAACTTGTTTGAGTTAAAAAAAAACTCTACTATCTT
CTCATAGTATTATTTATTACAATTAATTTTTCTTTTGCTCTTTTTTTCAG
ATTTCCTTTTACTTTGTTTCAACGTTTTTGGACACTCAACTTGAATGCCG
GTACAGGTACGATGACGTCATAGATAAGTGCCCCTATTCGACCTACACGC
CATTTGATAGTTCCTCCTTCACAATCAGATTCCTTAGAACCAAATCTTAT
CTTATCATTTCATTTCTCTGATGTAATCTTGCAAGCCTTGTAACAACTCA
ATAGATAACCAGGGGGGGTACCAAGTTGTGGTACTGGACCAGTGCTGAAA
AGTTATACTTTCTTGTTTTTTGAAATTTATCTGAAACCACCACCACTTAG
TACCCTGGTACTAAGTTAAATTTACCCCTTAAAATAGGTATACCACCTCT
TTGTACAAGGTACAATCTTGATATCACCATTGAGAAATTACACACCACCG
TTAAGTAGCCTGTACTAAGTTGATTTTCCCCCTCAAAATAGGTATACCAC
CCTTTAATTCTTAGTAATGGTACTTTCCGGTACACCTCCTTTAAATTTTC
TAAAAAACTTTACAACACTATTAAAAAACATACCACACCACTCTGTACCA
CCCTTAATATCTCAGGAAAAATTCCTGTCAATTTAGGTCAAGTCAAATAT
CATTTTCAAGCCAATTTTTTTTAAATCAAAAGAAATAAATGTTTTATCAT
TTCACATATTTTTTCACTCTCTTAAAAAACAGCAAAGGCCAAGCAACATT
TCGTTCTGACAACATTTCCACCATTTCCATCTTGAAAGACGTATTATCAA
AGGAAGCTACGAAACGAAAAATGAATCTAAACATATCTTGTGATCTCAAC
GAAGACTCCATTCCTAATGTTTTATACAGAATCCACCCAAAGCTTGAATA
TCAACTTCTCTTAGCAAAGAGGGTCCAACTAATTGATGGTCTAAAGGAGC
TGGAAACCTATGAGGGCAATGTGGATTTCTTGACAGAGGAATACCGTGAA
ATTTTGGAAAATGCTGATATTCTACAAGCAGAATTCAAGAAGCAGCCTTG
TCATTTGGAACGTCTCTACGGAATGATTACAGATTTGTATATTGACCGAC
ATAAATTCAAAGGCCAGAATGTGAAAAATAAAGTCTCACAGTTAATTTCC
ATTTTGGATAACTATGACTTGGATTCGCTCTTAGAGTTTTTTCAAGAATC
TTGATATAGTTTAAAAAGTGAAAATGAGGTACTACTGATATCCTAGATGA
AAATATTTGTTGCAAACTTTTAGAGCATTTGTCGATACAGAGGATTTCAA
ATTGCTGTTTGTTTTTTGTTTTTTTTTGCATGGAAATAAACCTCTAGGGA
CAAATAATGATTGATTTTCTATGGTGAGCCTCTTCTGGGTTACCAGTAAT
CAAAGATCAACACCTTTGATTTTTAAGGCACGTATCAAATGGGTGTTTTT
TTAAAGGATGGAACCAAAATATGAAATTGCGACGAGTTTTAAAGGCGTGA
TTGATCTACTGATGTGAATTAAGTTTTGTTTTTATTTCGGGTTTTTATTC
AGACTTAGATGCAAGTTTTCAATAGAGAAAATAGATTTTAATTGCTAAAC
AAAGTCTCTTGCAAAATTTTGAATTTTAGAAAATTTGTCAAGCGAAAATG
AAAACAAGATATTTGATTTGTTGCCATTAATAAAACATATTTTTTCCAAT
GTATCTCGTAGTGTCTCTAGCTAGCCAGGTATTGTGGAGCAGTGGAAACT
TTTCACAAAATTTAATGTGAAAATGCTACGTTTCTAACATCATTATGTTA
AAATCAGATAATTCAATAATATATTACGATTTGAAATTTTTAGCACTTGT
ACATAAAAAACGATATATTATAAATTATTCTAGCCATAGGGGTGTGTAAC
ATGCACATATTAAACGTGTGGTTTTTAAAAGCAGGTCTGAAACTTGTATA
TAATATTGTAAAAAATTTGTCACAAAAAACTGTATGATAACAGACTAGTA
TTCATAGTATTAAAGCCTTCCAAGAATTTTCAAAATTTTCCACCCAATAC
GTCATTTTTTCTATTGTTTAAGTGACTTATTGGGTGGAAAATTTTAAAAG
TTCTCAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015142XLOC_015142Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026975-exon-sc0000597-1575043694:207980..208141TCONS_00026975-exon-sc0000597-1575043694:207980..208141Clytia hemisphaericaexon
TCONS_00026975-exon-sc0000597-1575043694:191824..193269TCONS_00026975-exon-sc0000597-1575043694:191824..193269Clytia hemisphaericaexon
TCONS_00026975-exon-sc0000597-1575043694:190746..190989TCONS_00026975-exon-sc0000597-1575043694:190746..190989Clytia hemisphaericaexon
TCONS_00026975-exon-sc0000597-1575043694:190336..190391TCONS_00026975-exon-sc0000597-1575043694:190336..190391Clytia hemisphaericaexon
TCONS_00026975-exon-sc0000597-1575043694:188332..189709TCONS_00026975-exon-sc0000597-1575043694:188332..189709Clytia hemisphaericaexon
TCONS_00026975-exon-sc0000597-1510915933:207980..208141TCONS_00026975-exon-sc0000597-1510915933:207980..208141Clytia hemisphaericaexon
TCONS_00026975-exon-sc0000597-1510915933:191824..193269TCONS_00026975-exon-sc0000597-1510915933:191824..193269Clytia hemisphaericaexon
TCONS_00026975-exon-sc0000597-1510915933:190746..190989TCONS_00026975-exon-sc0000597-1510915933:190746..190989Clytia hemisphaericaexon
TCONS_00026975-exon-sc0000597-1510915933:190336..190391TCONS_00026975-exon-sc0000597-1510915933:190336..190391Clytia hemisphaericaexon
TCONS_00026975-exon-sc0000597-1510915933:188332..189709TCONS_00026975-exon-sc0000597-1510915933:188332..189709Clytia hemisphaericaexon
TCONS_00026975-exon-sc0000597-1491911889:207980..208141TCONS_00026975-exon-sc0000597-1491911889:207980..208141Clytia hemisphaericaexon
TCONS_00026975-exon-sc0000597-1491911889:191824..193269TCONS_00026975-exon-sc0000597-1491911889:191824..193269Clytia hemisphaericaexon
TCONS_00026975-exon-sc0000597-1491911889:190746..190989TCONS_00026975-exon-sc0000597-1491911889:190746..190989Clytia hemisphaericaexon
TCONS_00026975-exon-sc0000597-1491911889:190336..190391TCONS_00026975-exon-sc0000597-1491911889:190336..190391Clytia hemisphaericaexon
TCONS_00026975-exon-sc0000597-1491911889:188332..189709TCONS_00026975-exon-sc0000597-1491911889:188332..189709Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000597supercontigsc0000597:188332..208141 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.177579	0	0.105834	0.0527047	20.181	14.5776	13.063	15.0781	7.18465	9.79208	8.402	5.89892	3.11482	1.99767	1.32898	0.601812	4.8653	2.11891	2.11857	6.58022	5.76508	3.21955	0.118198	0.423127	23.7366	17.0206	4.11499	3.90529	0.820109	1.32825
Blast
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BLAST of TCONS_00026975 vs. Swiss-Prot (Human)
Match: BBS7 (Bardet-Biedl syndrome 7 protein OS=Homo sapiens GN=BBS7 PE=1 SV=2)

HSP 1 Score: 794.267 bits (2050), Expect = 0.000e+0
Identity = 413/721 (57.28%), Postives = 525/721 (72.82%), Query Frame = 2 
Query:  215 LALNLSRVDYLQVGVTSNKCMSVIPTAGGSSSKPTTQRIVVGDYEGVVTCFNIKKHVPNISFKTLPLNNKILRLCMGARAGPLMEKVYVCSGNEVYXXXXXXXXXXXXDSNLTESIQTMYADNLDLYLCGKYICNHYHDCIDSNYYLSPDLINDIVVLPESGGHKPMPILACQDRVLRALNGSDLYYEVEIPGSPSVAVL--GSQAENGADSVVYGTADGKIGLVQLNASAPEHVWEIGNEKQSGDVLSLDLYDVSSNGTKDLLVGRADGVIEVYGFDEGSNPFQHYKYTLSESITAVSGGSVCAPGYQEVAVSTYTGWILGLTSEPQQRQTGMQGSNTNDPVTAEIKQKITDLNAEIEELQGLVLKERDKYQQTANSKTAVSAVPMFEINDRFQLNHGDASYTLSIEVLMPIDIILLQSDVPVDLLDVEKNSAVVSYSSCDPESG-NFLLATYRCQANTTRLELKIRTIEGQHGHLQAYITPRLQPKTCIMKQYQIKPLSLHQRSHVFDQDRPHNELKLSGQFSQAEIHSWVYHALPEVPERVPMENEISFYFVSTFLDTQLECRYSKGQATFRSDNISTISILKDVLSKEATKRKMNLNISCDLNEDSIPNVLYRIHPKLEYQLLLAKRVQLIDGLKELETYEGNVDFLTEEYREILENADILQAEFKKQPCHLERLYGMITDLYIDRHKFKGQNVKNKVSQLISILDNYDLDSLLEFF 2368
            + L L+R+DYLQVGVTS K M +IP    +S    TQ++V+GD++GVV CF +KK      FKTLP   KI RL +G       EK+++ + +E+ GF K+GK FL F++NLTESI+ M+    DL+L   YI NHY DC D +YYLS D IND++ LP     +  P+LACQDRVLR L GSD+ Y VE+PG P+V  L  G+  ++G D +++GT+DGK+ L+Q+  S P   WEI NEK+ G +L +D +D+  +G KDLLVGR DG++EVY FD  + P   +   LSES+T++ GG V    Y E+ VSTY+GW+ GLT+EP  +++G         +  E++ KI+ L  E+E LQ  VL+ER+ YQQ++ S  A SAVP F IND+F LN  DASY+L +EV   ID +L+QSDVP+DLLDV+KNSAVVS+SSCD ES  NFLLATYRCQA+TTRLELKIR+IEGQ+G LQAY+TPR+QPKTC ++QY IKPLSLHQR+H  D DRP N L L+GQFS AE+HSWV   LPEVPE+ P    ++FYF +TFLDTQLE  Y KG+  F+SDNISTISILKDVLSKEATKRK+NLNIS ++NE S+ + L  IHPKLEYQLLLAK+VQLID LKEL+ +EGN +FL  EY  ILE AD LQ E+KKQP HLERLYGMITDL+ID+ KFKG NVK KV  L+ ILD+YD ++L+ FF
Sbjct:    1 MDLILNRMDYLQVGVTSQKTMKLIP----ASRHRATQKVVIGDHDGVVMCFGMKKGEAAAVFKTLP-GPKIARLELGGVINTPQEKIFIAAASEIRGFTKRGKQFLSFETNLTESIKAMHISGSDLFLSASYIYNHYCDCKDQHYYLSGDKINDVICLPVERLSRITPVLACQDRVLRVLQGSDVMYAVEVPGPPTVLALHNGNGGDSGED-LLFGTSDGKLALIQITTSKPVRKWEIQNEKKRGGILCIDSFDIVGDGVKDLLVGRDDGMVEVYSFDNANEPVLRFDQMLSESVTSIQGGCVGKDSYDEIVVSTYSGWVTGLTTEPIHKESG---PGEELKINQEMQNKISSLRNELEHLQYKVLQERENYQQSSQSSKAKSAVPSFGINDKFTLNKDDASYSLILEVQTAIDNVLIQSDVPIDLLDVDKNSAVVSFSSCDSESNDNFLLATYRCQADTTRLELKIRSIEGQYGTLQAYVTPRIQPKTCQVRQYHIKPLSLHQRTHFIDHDRPMNTLTLTGQFSFAEVHSWVVFCLPEVPEKPPAGECVTFYFQNTFLDTQLESTYRKGEGVFKSDNISTISILKDVLSKEATKRKINLNISYEINEVSVKHTLKLIHPKLEYQLLLAKKVQLIDALKELQIHEGNTNFLIPEYHCILEEADHLQEEYKKQPAHLERLYGMITDLFIDKFKFKGTNVKTKVPLLLEILDSYDQNALISFF 712
The following BLAST results are available for this feature:
BLAST of TCONS_00026975 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BBS70.000e+057.28Bardet-Biedl syndrome 7 protein OS=Homo sapiens GN... [more]
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