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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027048 ID=TCONS_00027048|Name=TCONS_00027048|organism=Clytia hemisphaerica|type=transcript|length=2438bp
CGACGTGTCAGAGACGCACAAGAGGCAACTAATGTTCAGATTCCAGAGAA
ACatatatactatatatataatGAATAATACAAATTAGTTATCTTGGTAT
GGCAGATTCCAATATTGTTCTAAATTTAACCCTGAGATCAGGGTTGTACC
AGTTCTCAATGCAGTTCTTAAGCTCAAGTTGTTCCTCCGATTCTGAAGGA
AAAAAGGATTTGATTCGATGACATTTTCTATTCAGTATACAGTCTAGAAA
ATTGATGTTATTTTCCAAACATATATCATTGATCTCATCCACTACTGAAT
AAGTACGATCATTCTTATCAAGTGCCATAACTGACAAGGCATAATCACGA
GTATTAACATTTACTAACATTTGATTCACCAGGTTCATTTTTCGATTGTA
TAAGATAACTTTGATATCAGATATTTTATAGAGCTGATGAAGATGGTTTT
TTGCGTGTTTGGATACACCAAGCATGGCTTTCAGAGCACACCTTGATTGT
CTGTTGATTTGATCCCAGTGGCAGTTCTTAAACTTGATCAATTCGAGACC
ATAGAGGAGTTTTGGAATCACTAGGGTTTTGTAGATATCGATAATTTGGT
TTGGATGGAGGTACCTCACTCCACCAGATATAAGCGAGGAAGTGACAGAC
CACATTTCCGATATACGATAGTCCAAGTGACTGTGAAGTTGGAGAATGCT
GATAGACTTTTTCCATAAGAAACCAAGATGCTTGAGTTTATCTTGTGGCT
CAATCTGTTCGCCATCCAGGATGATTGATTTGTCGGGTAGAGCACTGGTA
CCTGATATCAAGTACTGAGTCTTTGTAGTATTGAATTTCAGATTATGAGA
ACGACCATAGCGGACACATGTGTCTATGAGTTGTTGTAGACCACAAAGTG
TTGGGCTAATGAGAATGAGGTCGTCGGCAAACGCAACAACTGACATGCTG
GTTCCGTCTGGAAGATATGTTCCATGATTAGAATGTCTGATCTCTGAGAG
AAGATCCTCTGTATATAGGTTAAACAGATAGGGCGATATGATGGATCCTT
GTTTGACACCTTGTGACAGCTTGAATGAATTAGATTTCAAACCTCCATAA
GCAACCAATGACTCACTATTCAAGTAGGAGGATATTAGGTACTTGAGAAT
AGGTTTTGGAGTTGATTCACGATTTAGAAGTTTGGTAAATAGGGTATTCC
AGTTGCAGCTATCGAACGCCTTAGCTACATCCAAACTACATATATACAAT
GGTGATCTGTTCTGATTGTAGTATTTGATTGTGTCCTGAAGTAGTAGTTC
AGCATGCACGGTAGATGAATGGTTAGTAAAACCAAATTGGGAGGGATGTG
TAGATTTCAGCGTTGGGCATTTATCAATGATGATGACTTCCAGCAGCTTG
GAAAGGGTTGGTATAATACTGATCCCCCGATAGTTATTTGGATCCTTTAG
CGATTTGTTGTTTGATTTAACTAGAGGGATAATGACTGATAAACTAAGTG
ACGATGCGATATCACCGGAGAAGATACGGTTGATGAGGTAAGTAATATGT
TGTAGGAATTCCTTACTCATTGCATAAATAAAATGTTCACTAAGTATATG
GAAGGGGTCTGGAGTCTTATCCTTGTTCAGTTGACCAATGGCTTCCTCTA
CTTCAGATTGAGAAACATAGACGGTCTCACTTGATGGAAGGTGGTTAAGA
ATTTCTCTCAGTTGTTTATTGCTTTTTGTATTGTCTACAGTTTCGATTCC
GGGTTTATTTAAGACAGAGTTGAAGTGATTGGAGAGTTCTGTAATTATCT
CTGGTTTTGACATTTTTCCATTGATAGTAAAAAGTTTCTGCGAGTTTTGG
GATTTGTGAACTTTTAATGTCTTCCAATAGGTTTTTGGCTTTGTCTTTTT
CAACTTGTCGATATCGATGTAGTAATCCACAGTTGATTGGTGTTTTGCAT
TTCTTACTTGTTGTCGAAAGTGCTTTCTGGCGAATTTGAAACGGTTATAT
GATACGTTAGTCACCTCTCTTGGAAATCCCTCAGACTTCCATATGTTGAA
CATTTGTTGCACAAGTTTTCTGGTCTTGGAGAGATCACTGTTCCACCATG
TTTTAGGAGTTATTTTATGGTGGTTCTGTTCTAGTTCTATAAAACTTTCA
TAGGCAGAATATTTCAGAATATCAAAGAAGTCCTTCATCTCAGTGTCAAT
TGTTGAGTTATGCTCATGAGAGTTGGTAAGGTGTTCTTTGACCTTCTCTT
TATACTTTTCGATGAACAAACTGTTTTTCCACATGAATTTAGGTACCGTT
GTGGGTGTATTTAGTGATGGTTGTGTTTCCGGGCTGACTTGAAGACATGA
TGTTTTCAATGATATTGTTACCGGTAAGTGATCGCCTGTATTACATGGGT
GCGGAGATAATACTGATGAAGTTTCAACTATGTCTATA Run BLAST on NCBI protein sequence of TCONS_00027048-protein >TCONS_00027048-protein ID=TCONS_00027048-protein|Name=TCONS_00027048-protein|organism=Clytia hemisphaerica|type=polypeptide|length=782bp
IDIVETSSVLSPHPCNTGDHLPVTISLKTSCLQVSPETQPSLNTPTTVPK
FMWKNSLFIEKYKEKVKEHLTNSHEHNSTIDTEMKDFFDILKYSAYESFI
ELEQNHHKITPKTWWNSDLSKTRKLVQQMFNIWKSEGFPREVTNVSYNRF
KFARKHFRQQVRNAKHQSTVDYYIDIDKLKKTKPKTYWKTLKVHKSQNSQ
KLFTINGKMSKPEIITELSNHFNSVLNKPGIETVDNTKSNKQLREILNHL
PSSETVYVSQSEVEEAIGQLNKDKTPDPFHILSEHFIYAMSKEFLQHITY
LINRIFSGDIASSLSLSVIIPLVKSNNKSLKDPNNYRGISIIPTLSKLLE
VIIIDKCPTLKSTHPSQFGFTNHSSTVHAELLLQDTIKYYNQNRSPLYIC
SLDVAKAFDSCNWNTLFTKLLNRESTPKPILKYLISSYLNSESLVAYGGL
KSNSFKLSQGVKQGSIISPYLFNLYTEDLLSEIRHSNHGTYLPDGTSMSV
VAFADDLILISPTLCGLQQLIDTCVRYGRSHNLKFNTTKTQYLISGTSAL
PDKSIILDGEQIEPQDKLKHLGFLWKKSISILQLHSHLDYRISEMWSVTS
SLISGGVRYLHPNQIIDIYKTLVIPKLLYGLELIKFKNCHWDQINRQSRC
ALKAMLGVSKHAKNHLHQLYKISDIKVILYNRKMNLVNQMLVNVNTRDYA
LSVMALDKNDRTYSVVDEINDICLENNINFLDCILNRKCHRIKSFFPSES
EEQLELKNCIENWYNPDLRVKFRTILESAIPR Run BLAST on NCBI transcript from alignment at sc0000601:64276..66713 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027048 ID=TCONS_00027048|Name=TCONS_00027048|organism=Clytia hemisphaerica|type=transcript|length=2438bp|location=Sequence derived from alignment at sc0000601:64276..66713 (Clytia hemisphaerica)
TATAGACATAGTTGAAACTTCATCAGTATTATCTCCGCACCCATGTAATA
CAGGCGATCACTTACCGGTAACAATATCATTGAAAACATCATGTCTTCAA
GTCAGCCCGGAAACACAACCATCACTAAATACACCCACAACGGTACCTAA
ATTCATGTGGAAAAACAGTTTGTTCATCGAAAAGTATAAAGAGAAGGTCA
AAGAACACCTTACCAACTCTCATGAGCATAACTCAACAATTGACACTGAG
ATGAAGGACTTCTTTGATATTCTGAAATATTCTGCCTATGAAAGTTTTAT
AGAACTAGAACAGAACCACCATAAAATAACTCCTAAAACATGGTGGAACA
GTGATCTCTCCAAGACCAGAAAACTTGTGCAACAAATGTTCAACATATGG
AAGTCTGAGGGATTTCCAAGAGAGGTGACTAACGTATCATATAACCGTTT
CAAATTCGCCAGAAAGCACTTTCGACAACAAGTAAGAAATGCAAAACACC
AATCAACTGTGGATTACTACATCGATATCGACAAGTTGAAAAAGACAAAG
CCAAAAACCTATTGGAAGACATTAAAAGTTCACAAATCCCAAAACTCGCA
GAAACTTTTTACTATCAATGGAAAAATGTCAAAACCAGAGATAATTACAG
AACTCTCCAATCACTTCAACTCTGTCTTAAATAAACCCGGAATCGAAACT
GTAGACAATACAAAAAGCAATAAACAACTGAGAGAAATTCTTAACCACCT
TCCATCAAGTGAGACCGTCTATGTTTCTCAATCTGAAGTAGAGGAAGCCA
TTGGTCAACTGAACAAGGATAAGACTCCAGACCCCTTCCATATACTTAGT
GAACATTTTATTTATGCAATGAGTAAGGAATTCCTACAACATATTACTTA
CCTCATCAACCGTATCTTCTCCGGTGATATCGCATCGTCACTTAGTTTAT
CAGTCATTATCCCTCTAGTTAAATCAAACAACAAATCGCTAAAGGATCCA
AATAACTATCGGGGGATCAGTATTATACCAACCCTTTCCAAGCTGCTGGA
AGTCATCATCATTGATAAATGCCCAACGCTGAAATCTACACATCCCTCCC
AATTTGGTTTTACTAACCATTCATCTACCGTGCATGCTGAACTACTACTT
CAGGACACAATCAAATACTACAATCAGAACAGATCACCATTGTATATATG
TAGTTTGGATGTAGCTAAGGCGTTCGATAGCTGCAACTGGAATACCCTAT
TTACCAAACTTCTAAATCGTGAATCAACTCCAAAACCTATTCTCAAGTAC
CTAATATCCTCCTACTTGAATAGTGAGTCATTGGTTGCTTATGGAGGTTT
GAAATCTAATTCATTCAAGCTGTCACAAGGTGTCAAACAAGGATCCATCA
TATCGCCCTATCTGTTTAACCTATATACAGAGGATCTTCTCTCAGAGATC
AGACATTCTAATCATGGAACATATCTTCCAGACGGAACCAGCATGTCAGT
TGTTGCGTTTGCCGACGACCTCATTCTCATTAGCCCAACACTTTGTGGTC
TACAACAACTCATAGACACATGTGTCCGCTATGGTCGTTCTCATAATCTG
AAATTCAATACTACAAAGACTCAGTACTTGATATCAGGTACCAGTGCTCT
ACCCGACAAATCAATCATCCTGGATGGCGAACAGATTGAGCCACAAGATA
AACTCAAGCATCTTGGTTTCTTATGGAAAAAGTCTATCAGCATTCTCCAA
CTTCACAGTCACTTGGACTATCGTATATCGGAAATGTGGTCTGTCACTTC
CTCGCTTATATCTGGTGGAGTGAGGTACCTCCATCCAAACCAAATTATCG
ATATCTACAAAACCCTAGTGATTCCAAAACTCCTCTATGGTCTCGAATTG
ATCAAGTTTAAGAACTGCCACTGGGATCAAATCAACAGACAATCAAGGTG
TGCTCTGAAAGCCATGCTTGGTGTATCCAAACACGCAAAAAACCATCTTC
ATCAGCTCTATAAAATATCTGATATCAAAGTTATCTTATACAATCGAAAA
ATGAACCTGGTGAATCAAATGTTAGTAAATGTTAATACTCGTGATTATGC
CTTGTCAGTTATGGCACTTGATAAGAATGATCGTACTTATTCAGTAGTGG
ATGAGATCAATGATATATGTTTGGAAAATAACATCAATTTTCTAGACTGT
ATACTGAATAGAAAATGTCATCGAATCAAATCCTTTTTTCCTTCAGAATC
GGAGGAACAACTTGAGCTTAAGAACTGCATTGAGAACTGGTACAACCCTG
ATCTCAGGGTTAAATTTAGAACAATATTGGAATCTGCCATACCAAGATAA
CTAATTTGTATTATTCattatatatatagtatatatGTTTCTCTGGAATC
TGAACATTAGTTGCCTCTTGTGCGTCTCTGACACGTCG Coding sequence (CDS) from alignment at sc0000601:64276..66713 >TCONS_00027048 ID=TCONS_00027048|Name=TCONS_00027048|organism=Clytia hemisphaerica|type=CDS|length=2349bp|location=Sequence derived from alignment at sc0000601:64276..66713 (Clytia hemisphaerica)
ATAGACATAGTTGAAACTTCATCAGTATTATCTCCGCACCCATGTAATAC
AGGCGATCACTTACCGGTAACAATATCATTGAAAACATCATGTCTTCAAG
TCAGCCCGGAAACACAACCATCACTAAATACACCCACAACGGTACCTAAA
TTCATGTGGAAAAACAGTTTGTTCATCGAAAAGTATAAAGAGAAGGTCAA
AGAACACCTTACCAACTCTCATGAGCATAACTCAACAATTGACACTGAGA
TGAAGGACTTCTTTGATATTCTGAAATATTCTGCCTATGAAAGTTTTATA
GAACTAGAACAGAACCACCATAAAATAACTCCTAAAACATGGTGGAACAG
TGATCTCTCCAAGACCAGAAAACTTGTGCAACAAATGTTCAACATATGGA
AGTCTGAGGGATTTCCAAGAGAGGTGACTAACGTATCATATAACCGTTTC
AAATTCGCCAGAAAGCACTTTCGACAACAAGTAAGAAATGCAAAACACCA
ATCAACTGTGGATTACTACATCGATATCGACAAGTTGAAAAAGACAAAGC
CAAAAACCTATTGGAAGACATTAAAAGTTCACAAATCCCAAAACTCGCAG
AAACTTTTTACTATCAATGGAAAAATGTCAAAACCAGAGATAATTACAGA
ACTCTCCAATCACTTCAACTCTGTCTTAAATAAACCCGGAATCGAAACTG
TAGACAATACAAAAAGCAATAAACAACTGAGAGAAATTCTTAACCACCTT
CCATCAAGTGAGACCGTCTATGTTTCTCAATCTGAAGTAGAGGAAGCCAT
TGGTCAACTGAACAAGGATAAGACTCCAGACCCCTTCCATATACTTAGTG
AACATTTTATTTATGCAATGAGTAAGGAATTCCTACAACATATTACTTAC
CTCATCAACCGTATCTTCTCCGGTGATATCGCATCGTCACTTAGTTTATC
AGTCATTATCCCTCTAGTTAAATCAAACAACAAATCGCTAAAGGATCCAA
ATAACTATCGGGGGATCAGTATTATACCAACCCTTTCCAAGCTGCTGGAA
GTCATCATCATTGATAAATGCCCAACGCTGAAATCTACACATCCCTCCCA
ATTTGGTTTTACTAACCATTCATCTACCGTGCATGCTGAACTACTACTTC
AGGACACAATCAAATACTACAATCAGAACAGATCACCATTGTATATATGT
AGTTTGGATGTAGCTAAGGCGTTCGATAGCTGCAACTGGAATACCCTATT
TACCAAACTTCTAAATCGTGAATCAACTCCAAAACCTATTCTCAAGTACC
TAATATCCTCCTACTTGAATAGTGAGTCATTGGTTGCTTATGGAGGTTTG
AAATCTAATTCATTCAAGCTGTCACAAGGTGTCAAACAAGGATCCATCAT
ATCGCCCTATCTGTTTAACCTATATACAGAGGATCTTCTCTCAGAGATCA
GACATTCTAATCATGGAACATATCTTCCAGACGGAACCAGCATGTCAGTT
GTTGCGTTTGCCGACGACCTCATTCTCATTAGCCCAACACTTTGTGGTCT
ACAACAACTCATAGACACATGTGTCCGCTATGGTCGTTCTCATAATCTGA
AATTCAATACTACAAAGACTCAGTACTTGATATCAGGTACCAGTGCTCTA
CCCGACAAATCAATCATCCTGGATGGCGAACAGATTGAGCCACAAGATAA
ACTCAAGCATCTTGGTTTCTTATGGAAAAAGTCTATCAGCATTCTCCAAC
TTCACAGTCACTTGGACTATCGTATATCGGAAATGTGGTCTGTCACTTCC
TCGCTTATATCTGGTGGAGTGAGGTACCTCCATCCAAACCAAATTATCGA
TATCTACAAAACCCTAGTGATTCCAAAACTCCTCTATGGTCTCGAATTGA
TCAAGTTTAAGAACTGCCACTGGGATCAAATCAACAGACAATCAAGGTGT
GCTCTGAAAGCCATGCTTGGTGTATCCAAACACGCAAAAAACCATCTTCA
TCAGCTCTATAAAATATCTGATATCAAAGTTATCTTATACAATCGAAAAA
TGAACCTGGTGAATCAAATGTTAGTAAATGTTAATACTCGTGATTATGCC
TTGTCAGTTATGGCACTTGATAAGAATGATCGTACTTATTCAGTAGTGGA
TGAGATCAATGATATATGTTTGGAAAATAACATCAATTTTCTAGACTGTA
TACTGAATAGAAAATGTCATCGAATCAAATCCTTTTTTCCTTCAGAATCG
GAGGAACAACTTGAGCTTAAGAACTGCATTGAGAACTGGTACAACCCTGA
TCTCAGGGTTAAATTTAGAACAATATTGGAATCTGCCATACCAAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027048-exon-sc0000601-1491911889:64276..66713 | TCONS_00027048-exon-sc0000601-1491911889:64276..66713 | Clytia hemisphaerica | exon |
| TCONS_00027048-exon-sc0000601-1510915933:64276..66713 | TCONS_00027048-exon-sc0000601-1510915933:64276..66713 | Clytia hemisphaerica | exon |
| TCONS_00027048-exon-sc0000601-1575043694:64276..66713 | TCONS_00027048-exon-sc0000601-1575043694:64276..66713 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000601 | supercontig | sc0000601:64276..66713 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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