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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027075 ID=TCONS_00027075|Name=TCONS_00027075|organism=Clytia hemisphaerica|type=transcript|length=3246bpRun BLAST on NCBI protein sequence of TCONS_00027075-protein >TCONS_00027075-protein ID=TCONS_00027075-protein|Name=TCONS_00027075-protein|organism=Clytia hemisphaerica|type=polypeptide|length=864bp MAVIEFCFNSTLTPIWDHGISMCFYKTVQPIVVFILSLLVFCYHQYIRYKRun BLAST on NCBI transcript from alignment at sc0000606:27156..44328+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027075 ID=TCONS_00027075|Name=TCONS_00027075|organism=Clytia hemisphaerica|type=transcript|length=17173bp|location=Sequence derived from alignment at sc0000606:27156..44328+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000606:27156..44328+ >TCONS_00027075 ID=TCONS_00027075|Name=TCONS_00027075|organism=Clytia hemisphaerica|type=CDS|length=49305bp|location=Sequence derived from alignment at sc0000606:27156..44328+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027075 vs. Swiss-Prot (Human)
Match: ABCB6 (ATP-binding cassette sub-family B member 6, mitochondrial OS=Homo sapiens GN=ABCB6 PE=1 SV=1) HSP 1 Score: 692.189 bits (1785), Expect = 0.000e+0 Identity = 377/739 (51.01%), Postives = 490/739 (66.31%), Query Frame = 3
Query: 474 ILAAILNFLAWVVGFKALKKERKHYFVIKAK------RHSVLMLLFWTVALLFECLIFFSLNKD------GSFLKHYQEDIKLLNLIIFSIKFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVTDFWEKCQKLWPFVWPKDNWXXXXXXXXXXXXIA-GRVINVFVPLYNKKIVNYLTNKSNKEDPWK----MILMYTLFMFLQGGGIGSMGLLNNLRSFIWIKVQQYTSRSVQTELFEHLHDLSLRWHLGRKTGEVIRMVDRGSTSIESLLSYILFQIAPTIVDIIVALVFFGAVFNGWFALIVFITMFLYIATTIGITEWRTKYRRDMNEKDNVTKAVAVDSLLNFETVKYYNNEAFEVDRYTDKITDYQATQWWVQMSLNFLNTGQNVVITVGLLVGMLYCGKLCVEDVLDVGDFVLYITYVRQLYMPLNFFGTYYRLIQSAFIDMENMFDLMDQEIEIVDKNNASDLKVNHGLVEFKNVSFHYDERKPVLQGVSFTVLPGTTTALVGPSGSGKSTIIRLLFRFYEVQAGSIVLDGKDIRDVTQRSLRSKIGVVPQDTVLFNDSIKYNIAYGRVGSSDVQIKEAAASSDIHTKIITFPDAYETLVGERGLKLSGGEKQRVAIARTLLKAPDIVLLDEATSALDTQTERNIQASLNRVCANKTTVVVAHRLSTIIGADQILVLKDGLIVERGRHHELLEQEGLYYKMWN-QQLQDENHPES-PESDKK 2633
+LA++L LA G L ER A RHS +LL WTVA E L S N + Q + +L ++ F L L L + D+ + S+ + QS DF K + L ++WP+ + V+L L+ R +NV VP++ + IVN LT K+ PW + Y FLQGGG GS G ++NLR+F+WI+VQQ+TSR V+ +F HLH+LSLRWHLGR+TGEV+R+ DRG++S+ LLSY++F + PT+ DII+ +++F FN WF LIVF+ M LY+ TI +TEWRTK+RR MN ++N T+A AVDSLLNFETVKYYN E++EV+RY + I YQ +W SL LN QN+VI +GLL G L C E L VGD+VL+ TY+ QLYMPLN+FGTYYR+IQ+ FIDMENMFDL+ +E E+ D A L+ G +EF+NV F Y + + LQ VSFTV+PG T ALVGPSG+GKSTI+RLLFRFY++ +G I +DG+DI VTQ SLRS IGVVPQDTVLFND+I NI YGRV + + +++ AA ++ IH I+ FP+ Y T VGERGLKLSGGEKQRVAIART+LKAP I+LLDEATSALDT ER IQASL +VCAN+TT+VVAHRLST++ ADQILV+KDG IVERGRH LL + G+Y MW QQ Q+E ++ P++ ++
Sbjct: 108 LLASVLESLAGACGLWLLVVERSQARQRLAMGIWIKFRHSPGLLLLWTVAFAAENLALVSWNSPQWWWARADLGQQVQFSLWVLRYVVSGGLFVLGLWAPGLRPQSYTLQVHEEDQDVERSQVRSAAQQSTWRDFGRKLRLLSGYLWPRGSPALQLVVLICLGLMGLERALNVLVPIFYRNIVNLLTEKA----PWNSLAWTVTSYVFLKFLQGGGTGSTGFVSNLRTFLWIRVQQFTSRRVELLIFSHLHELSLRWHLGRRTGEVLRIADRGTSSVTGLLSYLVFNVIPTLADIIIGIIYFSMFFNAWFGLIVFLCMSLYLTLTIVVTEWRTKFRRAMNTQENATRARAVDSLLNFETVKYYNAESYEVERYREAIIKYQGLEWKSSASLVLLNQTQNLVIGLGLLAGSLLCAYFVTEQKLQVGDYVLFGTYIIQLYMPLNWFGTYYRMIQTNFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQEETSEDTKPQTMER 842 The following BLAST results are available for this feature:
BLAST of TCONS_00027075 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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