TCONS_00027082 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027082
Unique NameTCONS_00027082
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2102

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027082 ID=TCONS_00027082|Name=TCONS_00027082|organism=Clytia hemisphaerica|type=transcript|length=2102bp
ctgtgacctgcgtttcgaactagccacATAAATTTTGCCCAACCTCATAC
ACCCATTTACACAtgcagaattatttttactttaatgTGTAATCTAGGCA
TACCAAATCAAAGCTCTATCTCAGGAATGGAATAAAGAATTATGGTTGGT
TGATTATGTTGGCTGCTGCACATTAGCAATtggccattttgtttatttca
agttttcaagttttgattattttgggaTCTGGAGCTTTAATTCTGGTAAC
TCTCACCCTTGCTATGACCTTTTTATGGTGCAATGGTGGACTTAAAAAAT
ATCACAGGGACTAGATTCAGTAAAATTGGAGTGCTTAATTGGTCTAGCAG
AAGTCCATCAGGGCTTAATTCTGTCTGTCATGAATAAACTTTCACACTAC
GAAAGCAATGCCTTGGAAAACCTGGTAATAACTTTACATAAAGTGTTAAC
ACATAGCTTTATTTACAAGGTATTAACCTAGAAAAAGTCTGGTGATCGAG
GGGATGATGCCCTtcgtaaaaatcacaaaaagggaagatcaaaaacattt
tcaataggCTACATTTTAAGATACTAACTGTGTTAGTTTTGCATTCAACG
TAAGGACAAGAGTGCAGACTTTAAGGAACTCTATTTTATATTTCTCTATT
ATGATTTAATTAGTtataaatatcttaaaattcaaaatggtgaGAGTATT
TGTTGTAACTGGATCAAACAAAGGCATTGGAAAATCAATAGTGAAGTTAC
TATTGCAAGATAAAGAGGAAAAGATTGTCTATCTCACTGCAAGAAATGAA
GAGCTTGGATTACAAACAGTCAAAGAATTTGAACAAAATGGTTTGAAACC
AAGGTTTCATCAACTAGATATTACGGATCAAAACAGTATTGATAGATTAC
GTGATCATTTGCAAAAGGAGCATCATGGCATTGATATATTGGTTAATAAT
GCTGGAATAGCATATTCTAATGCANCTGAACCCAAGATTTCATCAACTAG
ATATTACGGATCAAAACAGTATTAATAGATTACGTGATCATCTTCAAAAT
GAGCATCATGGCCTTGATGTTCTGGTCAATAATGCTGGAATGGCATACAA
AGGATCAAGTACAGCTCCTTTTGCTGAACAAGCAGAAGTGACAAACAATT
GCAACTTCTTTGGAACTGTGAACATATGTGAAGCGCTTTTTCCCATCCTC
AAACAAAATGGAAGAGTTGTTCTTGTTTCAAGTTTCACAAGTGAGATGGC
ATACTCAGGCTTTTCCAAAGAACTTAAAGCTAAATTCACAGATCCAAATT
TAAATATGGAagGATTGAAATTGTTAATTCATGATTTTGTTACCGCTGCC
AAGGATAATCAAGTAAAGGAGCGTGGTTGGGTTGAATCAGCTTATGCGAC
TTCAAAAGTTGGTGTTTCCTTTATGGGAATCTTGCAACAAAAACAAGTAG
ATGCTGAATATCCTGATAAAAACATCTTGGTGAATTACTGCTGTCCTGGT
ATAGTTGATACTGGAATGACCGGTGGGAGATATGAGGGAATGGTTTCCCC
TGATGAAGGTGCTGATACTCCAATTTATTTAGCATTGATTTCTGTTGATG
CTAAAGAACCCAAGGGGCAATTTTGCAAATTGAGAAAAGTGGTGCCATAC
CCTCCATCTaactgatttgatttgatttaatttaattttttaatgcaTTT
ATTTTTATAGGGATACAGCtatttaatattttgataaataggCATGATTT
ATTTTCTATTTAATTCCATTTCACATTTTACATAATTCACATTCACTTAG
GATCTAGGTATATAATGTAAGCTGATattaaacttcttttttttaataat
ttttgtttatctaatttttgttttaaatatttttctatttcaatTTAGCT
TCACAAGATAATTTTTTCACAACAAGCCAATTAGTTAAAATTATTCACCA
TCAAGTATTTTTAGATGTGTCAATTTGTTTGTACTTTAGATCTTCACTAT
GGAAAATTAAATGatttaatattttaattgtagGATCTAGTTTCAAAAGT
TACTTTCataaaccatttatttcatcattaTACAGAGATCTTCAATGCCC
CT
Run BLAST on NCBI

protein sequence of TCONS_00027082-protein

>TCONS_00027082-protein ID=TCONS_00027082-protein|Name=TCONS_00027082-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MXLNPRFHQLDITDQNSINRLRDHLQNEHHGLDVLVNNAGMAYKGSSTAP
FAEQAEVTNNCNFFGTVNICEALFPILKQNGRVVLVSSFTSEMAYSGFSK
ELKAKFTDPNLNMEGLKLLIHDFVTAAKDNQVKERGWVESAYATSKVGVS
FMGILQQKQVDAEYPDKNILVNYCCPGIVDTGMTGGRYEGMVSPDEGADT
PIYLALISVDAKEPKGQFCKLRKVVPYPPSN
Run BLAST on NCBI

transcript from alignment at sc0000606:176385..178781+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027082 ID=TCONS_00027082|Name=TCONS_00027082|organism=Clytia hemisphaerica|type=transcript|length=2397bp|location=Sequence derived from alignment at sc0000606:176385..178781+ (Clytia hemisphaerica)
ctgtgacctgcgtttcgaactagccacATAAATTTTGCCCAACCTCATAC
ACCCATTTACACAtgcagaattatttttactttaatgTGTAATCTAGGCA
TACCAAATCAAAGCTCTATCTCAGGAATGGAATAAAGAATTATGGTTGGT
TGATTATGTTGGCTGCTGCACATTAGCAATtggccattttgtttatttca
agttttcaagttttgattattttgggaTCTGGAGCTTTAATTCTGGTAAC
TCTCACCCTTGCTATGACCTTTTTATGGTGCAATGGTGGACTTAAAAAAT
ATCACAGGGACTAGATTCAGTAAAATTGGAGTGCTTAATTGGTCTAGCAG
AAGTCCATCAGGGCTTAATTCTGTCTGTCATGAATAAACTTTCACACTAC
GAAAGCAATGCCTTGGAAAACCTGGTAATAACTTTACATAAAGTGTTAAC
ACATAGCTTTATTTACAAGGTATTAACCTAGAAAAAGTCTGGTGATCGAG
GGGATGATGCCCTtcgtaaaaatcacaaaaagggaagatcaaaaacattt
tcaataggCTACATTTTAAGATACTAACTGTGTTAGTTTTGCATTCAACG
TAAGGACAAGAGTGCAGACTTTAAGGAACTCTATTTTATATTTCTCTATT
ATGATTTAATTAGTtataaatatcttaaaattcaaaatggtgaGAGTATT
TGTTGTAACTGGATCAAACAAAGGCATTGGAAAATCAATAGTGAAGTTAC
TATTGCAAGATAAAGAGGAAAAGATTGTCTATCTCACTGCAAGAAATGAA
GAGCTTGGATTACAAACAGTCAAAGAATTTGAACAAAATGGTTTGAAACC
AAGGTTTCATCAACTAGATATTACGGATCAAAACAGTATTGATAGATTAC
GTGATCATTTGCAAAAGGAGCATCATGGCATTGATATATTGGTTAATAAT
GCTGGAATAGCATATTCTAATGCANCTGAACCCAAGATTTCATCAACTAG
ATATTACGGATCAAAACAGTATTAATAGATTACGTGATCATCTTCAAAAT
GAGCATCATGGCCTTGATGTTCTGGTCAATAATGCTGGAATGGCATACAA
AGGATCAAGTACAGCTCCTTTTGCTGAACAAGCAGAAGTGACAAACAATT
GCAACTTCTTTGGAACTGTGAACATATGTGAAGCGCTTTTTCCCATCCTC
AAACAAAATGGAAGAGTTGTTCTTGTTTCAAGTTTCACAAGTGAGATGGC
ATACTCAGGCTTTTCCAAAGAACTTAAAGCTAAATTCACAGATCCAAATT
TAAATATGGAaggtaatttttatgtttttgtgatttttgctttttgaatt
ttggtgtttttttactATCTGTAAGGCCAATTTGAAAATCGATAGTCAAG
TTACTATAGGATATTATCATCCTATAATTCATTTCTATTCATTAGAGATT
AGTTTGAACTGTATGGTGGTTGAATTCCCTTTATTTTGAGATTCTGATTA
taatattgaataaaaattttccctcctcacatgaaaattgaaatttgttt
gTTGCTATATTAGAGGTAGATTTTTAATAAAAGCCTTctaacttttaaaa
attacagGATTGAAATTGTTAATTCATGATTTTGTTACCGCTGCCAAGGA
TAATCAAGTAAAGGAGCGTGGTTGGGTTGAATCAGCTTATGCGACTTCAA
AAGTTGGTGTTTCCTTTATGGGAATCTTGCAACAAAAACAAGTAGATGCT
GAATATCCTGATAAAAACATCTTGGTGAATTACTGCTGTCCTGGTATAGT
TGATACTGGAATGACCGGTGGGAGATATGAGGGAATGGTTTCCCCTGATG
AAGGTGCTGATACTCCAATTTATTTAGCATTGATTTCTGTTGATGCTAAA
GAACCCAAGGGGCAATTTTGCAAATTGAGAAAAGTGGTGCCATACCCTCC
ATCTaactgatttgatttgatttaatttaattttttaatgcaTTTATTTT
TATAGGGATACAGCtatttaatattttgataaataggCATGATTTATTTT
CTATTTAATTCCATTTCACATTTTACATAATTCACATTCACTTAGGATCT
AGGTATATAATGTAAGCTGATattaaacttcttttttttaataatttttg
tttatctaatttttgttttaaatatttttctatttcaatTTAGCTTCACA
AGATAATTTTTTCACAACAAGCCAATTAGTTAAAATTATTCACCATCAAG
TATTTTTAGATGTGTCAATTTGTTTGTACTTTAGATCTTCACTATGGAAA
ATTAAATGatttaatattttaattgtagGATCTAGTTTCAAAAGTTACTT
TCataaaccatttatttcatcattaTACAGAGATCTTCAATGCCCCT

Coding sequence (CDS) from alignment at sc0000606:176385..178781+

>TCONS_00027082 ID=TCONS_00027082|Name=TCONS_00027082|organism=Clytia hemisphaerica|type=CDS|length=1392bp|location=Sequence derived from alignment at sc0000606:176385..178781+ (Clytia hemisphaerica)
ATGCANCTGAACCCAAGATTTCATCAACTAGATATTACGGATCAAAACAG
TATTAATAGATTACGTGATCATCTTCAAAATGAGCATCATGGCCTTGATG
TTCTGGTCAATAATGCTGGAATGGCATACAAAGGATCAAGTACAGCTCCT
TTTGCTGAACAAGCAGAAGTGACAAACAATTGCAACTTCTTTGGAACTGT
GAACATATGTGAAGCGCTTTTTCCCATCCTCAAACAAAATGGAAGAGTTG
TTCTTGTTTCAAGTTTCACAAGTGAGATGGCATACTCAGGCTTTTCCAAA
GAACTTAAAGCTAAATTCACAGATCCAAATTTAAATATGGAagGATTGAA
ATTGTTAATTCATGATTTTGTTACCGCTGCCAAGGATAATCAAGTAAAGG
AGCGTGGTTGGGTTGAATCAGCTTATGCGACTTCAAAAGTTGGTGTTTCC
TTTATGGGAATCTTGCAACAAAAACAAGTAGATGCTGAATATCCTGATAA
AAACATCTTGGTGAATTACTGCTGTCCTGGTATAGTTGATACTGGAATGA
CCGGTGGGAGATATGAGGGAATGGTTTCCCCTGATGAAGGTGCTGATACT
CCAATTTATTTAGCATTGATTTCTGTTGATGCTAAAGAACCCAAGGGGCA
ATTTTGCAAATTGAGAAAAGTGGTGCCATACCCTCCATCTaactgaATGC
ANCTGAACCCAAGATTTCATCAACTAGATATTACGGATCAAAACAGTATT
AATAGATTACGTGATCATCTTCAAAATGAGCATCATGGCCTTGATGTTCT
GGTCAATAATGCTGGAATGGCATACAAAGGATCAAGTACAGCTCCTTTTG
CTGAACAAGCAGAAGTGACAAACAATTGCAACTTCTTTGGAACTGTGAAC
ATATGTGAAGCGCTTTTTCCCATCCTCAAACAAAATGGAAGAGTTGTTCT
TGTTTCAAGTTTCACAAGTGAGATGGCATACTCAGGCTTTTCCAAAGAAC
TTAAAGCTAAATTCACAGATCCAAATTTAAATATGGAagGATTGAAATTG
TTAATTCATGATTTTGTTACCGCTGCCAAGGATAATCAAGTAAAGGAGCG
TGGTTGGGTTGAATCAGCTTATGCGACTTCAAAAGTTGGTGTTTCCTTTA
TGGGAATCTTGCAACAAAAACAAGTAGATGCTGAATATCCTGATAAAAAC
ATCTTGGTGAATTACTGCTGTCCTGGTATAGTTGATACTGGAATGACCGG
TGGGAGATATGAGGGAATGGTTTCCCCTGATGAAGGTGCTGATACTCCAA
TTTATTTAGCATTGATTTCTGTTGATGCTAAAGAACCCAAGGGGCAATTT
TGCAAATTGAGAAAAGTGGTGCCATACCCTCCATCTaactga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015222XLOC_015222Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027082-proteinTCONS_00027082-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027082-exon-sc0000606-1491911889:176385..177696TCONS_00027082-exon-sc0000606-1491911889:176385..177696Clytia hemisphaericaexon
TCONS_00027082-exon-sc0000606-1510915933:176385..177696TCONS_00027082-exon-sc0000606-1510915933:176385..177696Clytia hemisphaericaexon
TCONS_00027082-exon-sc0000606-1575043694:176385..177696TCONS_00027082-exon-sc0000606-1575043694:176385..177696Clytia hemisphaericaexon
TCONS_00027082-exon-sc0000606-1491911889:177992..178781TCONS_00027082-exon-sc0000606-1491911889:177992..178781Clytia hemisphaericaexon
TCONS_00027082-exon-sc0000606-1510915933:177992..178781TCONS_00027082-exon-sc0000606-1510915933:177992..178781Clytia hemisphaericaexon
TCONS_00027082-exon-sc0000606-1575043694:177992..178781TCONS_00027082-exon-sc0000606-1575043694:177992..178781Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000606supercontigsc0000606:176385..178781 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
55.0134	55.9496	60.5303	62.4911	43.462	31.9184	16.6607	18.7074	11.8449	11.9884	8.45259	6.63598	5.67985	4.38198	10.6653	12.7558	10.0742	8.89353	6.24364	10.1239	4.72678	4.22885	18.2075	17.2763	0.987478	1.62384	7.10005	3.99566	8.36282	6.72328
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR020904Sc_DH/Rdtase_CS
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016491 oxidoreductase activity
Blast
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BLAST of TCONS_00027082 vs. Swiss-Prot (Human)
Match: CBR1 (Carbonyl reductase [NADPH] 1 OS=Homo sapiens GN=CBR1 PE=1 SV=3)

HSP 1 Score: 196.438 bits (498), Expect = 1.066e-56
Identity = 101/221 (45.70%), Postives = 135/221 (61.09%), Query Frame = 1 
Query:  979 NPRFHQLDITDQNSINRLRDHLQNEHHGLDVLVNNAGMAYKGSSTAPFAEQAEVTNNCNFFGTVNICEALFPILKQNGRVVLVSSFTSEMAYSGFSKELKAKFTDPNLNMEGLKLLIHDFVTAAKDNQVKERGWVESAYATSKVGVSFMGILQQKQVDAEYPDKNILVNYCCPGIVDTGMTGGRYEGMVSPDEGADTPIYLALISVDAKEPKGQFCKLRKV 1641
            +PRFHQLDI D  SI  LRD L+ E+ GLDVLVNNAG+A+K +   PF  QAEVT   NFFGT ++C  L P++K  GRVV VSS  S  A    S EL+ KF    +  E L  L++ FV   K    ++ GW  SAY  +K+GV+ +  +  +++  +     IL+N CCPG V T M G +     SP+EGA+TP+YLAL+  DA+ P GQF   ++V
Sbjct:   56 SPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPK--ATKSPEEGAETPVYLALLPPDAEGPHGQFVSEKRV 274

HSP 2 Score: 90.5077 bits (223), Expect = 9.682e-20
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 3 
Query:  690 VRVFVVTGSNKGIGKSIVKLLLQDKEEKIVYLTARNEELGLQTVKEFEQNGLKPRFHQLDITDQNSIDRLRDHLQKEHHGIDILVNNAGIAYSNA 974
            + V +VTG NKGIG +IV+ L +     +V LTAR+   G   V++ +  GL PRFHQLDI D  SI  LRD L+KE+ G+D+LVNNAGIA+  A
Sbjct:    5 IHVALVTGGNKGIGLAIVRDLCRLFSGDVV-LTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVA 98
The following BLAST results are available for this feature:
BLAST of TCONS_00027082 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CBR11.066e-5645.70Carbonyl reductase [NADPH] 1 OS=Homo sapiens GN=CB... [more]
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