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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027101 ID=TCONS_00027101|Name=TCONS_00027101|organism=Clytia hemisphaerica|type=transcript|length=1220bp
GAACAATAAGTGTAATAGGTCACAAATTTAAGAGTAGGTTTTTCCATACA
TAAAAAGTCAGTTAAAATCAAATCTCCAGATCATTAATTGGAATCGCATT
GGCAAGTAAAGAAGTAAGTCTTTGGTTTGTTAATGGTAAAAGATAACAGA
TATCTGACGGCACTGAGTTTAAAGCTCAAAGGGTATAGAGTGGAACCATC
AGCCGTTCACAAGCAAGAAAGAATGAATCCATAAGACTTGCGCCACCTTT
AGAACGACGTATTGAACCTAGCGCTTTCTTTGTTTCCACGCTGCCTTCTT
TTCGAAAACTGGCGATATATTTTACTTTGAATCTAGATTTTGCATGAAAA
CTACCTGGGTCACGTGTTTCAGATTGGAAATAAGTgccttcatttcccat
ccaggagttctTTAATGAAACTCTGCGATGAAATTAGTTTATGATCTTTG
ATTACCCCCTGTCTCATTGGCACGCGGAACCAAATAAAGGAATTTCATGt
gatgagaaagaaaaatattatgcCAATCTTGACACAGGACCTTTTTGCCT
CTTACTTGATTGTATTAGCATGGttagtttctttactttagcttcattat
ttctttctttcagaTATTTAGAAAGTGAAATTAAATCCAACCACCTTCAA
CATGCCACAGTTCGGAGGAGCACCAAAATGCGGTCGATGCGGAAAATCAG
TTTACCAACAAGAAGAGAAGATTGCTGCAGGAGGCTCATGGCATAAACAG
GGTTGTTTTACTTGCAAAGATTGCAATAAATCGTTGGATTCCAATACTAT
CGCTGAGAAGAAAGGAGAGAACGGCGCTGTTGGAGAAATCTATTGCAAAT
CATGTTATGGTAAACACTACGGACCAAAAGGTTACGGATTTGGTGGTGGC
TCCGGTACTCTTTCCGTAAgtggaaaataagaaaatcttccGGACGTCCC
AGCTATTCTCCAAGATTGTAAATAGGATACAAAATAGAGGTATATGGCTT
ACTTCAACAAACTGGTACGTGGAACAAACGTCCAAATGGCGCCCATCTAA
CGCCCACGACCATCTTTTTCATATTAGTTGGGTATAAAGTGCAATATATC
AGATATTTGATTGAATTCCCCTGTAAATATCtttgttatatttttatgaC
AATATTTAATTGAATTTTATATAGTTATACATTCAATTTATAATCCAAGA
AAAATTTTGGACTAAAAGAT Run BLAST on NCBI transcript from alignment at sc0000606:85052..86831- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027101 ID=TCONS_00027101|Name=TCONS_00027101|organism=Clytia hemisphaerica|type=transcript|length=1780bp|location=Sequence derived from alignment at sc0000606:85052..86831- (Clytia hemisphaerica)
GAACAATAAGTGTAATAGGTCACAAATTTAAGAGTAGGTTTTTCCATACA
TAAAAAGTCAGTTAAAATCAAATCTCCAGATCATTAATTGGAATCGCATT
GGCAAGTAAAGAAGTAAGTCTTTGGTTTGTTAATGGTAAAAGATAACAGA
TATCTGACGGCACTGAGTTTAAAGCTCAAAGGGTATAGAGTGGAACCATC
AGCCGTTCACAAGCAAGAAAGAATGAATCCATAAGACTTGCGCCACCTTT
AGAACGACGTATTGAACCTAGCGCTTTCTTTGTTTCCACGCTGCCTTCTT
TTCGAAAACTGGCGATATATTTTACTTTGAATCTAGATTTTGCATGAAAA
CTACCTGGGTCACGTGTTTCAGATTGGAAATAAGTGCCTTCATTTCCCAT
CCAGGAGTTCTTTAATGAAACTCTGCGATGAAATTAGTTTATGATCTTTG
ATTACCCCCTGTCTCATTGGCACGCGGAACCAAATAAAGGAATTTCATGT
GATGAGAAAGAAAAATATTATGCCAATCTTGACACAGGACCTTTTTGCCT
CTTACTTGATTGTATTAGCATGGTTAGTTTCTTTACTTTAGCTTCATTAT
TTCTTTCTTTCAGATATTTAGAAAGTGAAATTAAATCCAACCACCTTCAA
CATGCCACAGGTAAATCACGTGTTTTTATTGCATCTAAACCGAAATAGAG
AAACCAATGTTTACTGTGGAGCAATCCAGGGAGAAAGAGTGGTGTCCTTC
CCTACCTTCAGCTATATGGCTATTGAAAGAGGAGCTTTTATGTTGCCTCA
GTTTTTGGTCGCAAGTCTTAATAACTTCAAGTCGTGTCAGAAAAATCATA
AAATCAAATACGTCAAAACATGTTCAGGATGGACATTTTTCTTGTATTGG
AAGTTTATCAGTTTGCTAAAACCTTTCATATATTTTGATTGTTTTCTACC
AGTTCGGAGGAGCACCAAAATGCGGTCGATGCGGAAAATCAGTTTACCAA
CAAGAAGAGAAGATTGCTGCAGGAGGCTCATGGCATAAACAGGGTTGTTT
TACTTGCAAAGATTGCAATAAATCGTTGGATTCCAATACTATCGCTGAGA
AGAAAGGAGGTAGGCTAATCTCTTTATGATGCTAGGATTGACAGGTATTT
TTTACAGAGGCAATGACTTTAATAGACATCAATAACATTCCAACTGTGGT
GTTTCGATTTGCCTTATTCTATTCTTCCAACTCAGTATTGCTCAGGTGAG
AATCTAACTCATAGAAATCCAATATTATCAATACCATCAGAGTGTACACC
TCATTTTTTTTCAGCCATACGTCCTTTTCAAATTGACGAATGATCAAATT
GAATTACTGTATATACTTTCGTTACAGAGAACGGCGCTGTTGGAGAAATC
TATTGCAAATCATGTTATGGTAAACACTACGGACCAAAAGGTTACGGATT
TGGTGGTGGCTCCGGTACTCTTTCCGTAAGTGGAAAATAAGAAAATCTTC
CGGACGTCCCAGCTATTCTCCAAGATTGTAAATAGGATACAAAATAGAGG
TATATGGCTTACTTCAACAAACTGGTACGTGGAACAAACGTCCAAATGGC
GCCCATCTAACGCCCACGACCATCTTTTTCATATTAGTTGGGTATAAAGT
GCAATATATCAGATATTTGATTGAATTCCCCTGTAAATATCTTTGTTATA
TTTTTATGACAATATTTAATTGAATTTTATATAGTTATACATTCAATTTA
TAATCCAAGAAAAATTTTGGACTAAAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027101-exon-sc0000606-1575043694:86172..86831 | TCONS_00027101-exon-sc0000606-1575043694:86172..86831 | Clytia hemisphaerica | exon |
| TCONS_00027101-exon-sc0000606-1575043694:85723..85879 | TCONS_00027101-exon-sc0000606-1575043694:85723..85879 | Clytia hemisphaerica | exon |
| TCONS_00027101-exon-sc0000606-1575043694:85052..85454 | TCONS_00027101-exon-sc0000606-1575043694:85052..85454 | Clytia hemisphaerica | exon |
| TCONS_00027101-exon-sc0000606-1510915933:86172..86831 | TCONS_00027101-exon-sc0000606-1510915933:86172..86831 | Clytia hemisphaerica | exon |
| TCONS_00027101-exon-sc0000606-1510915933:85723..85879 | TCONS_00027101-exon-sc0000606-1510915933:85723..85879 | Clytia hemisphaerica | exon |
| TCONS_00027101-exon-sc0000606-1510915933:85052..85454 | TCONS_00027101-exon-sc0000606-1510915933:85052..85454 | Clytia hemisphaerica | exon |
| TCONS_00027101-exon-sc0000606-1491911889:86172..86831 | TCONS_00027101-exon-sc0000606-1491911889:86172..86831 | Clytia hemisphaerica | exon |
| TCONS_00027101-exon-sc0000606-1491911889:85723..85879 | TCONS_00027101-exon-sc0000606-1491911889:85723..85879 | Clytia hemisphaerica | exon |
| TCONS_00027101-exon-sc0000606-1491911889:85052..85454 | TCONS_00027101-exon-sc0000606-1491911889:85052..85454 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000606 | supercontig | sc0000606:85052..86831 - |
Blast
The following BLAST results are available for this feature:
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