TCONS_00027110 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027110
Unique NameTCONS_00027110
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length643

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027110 ID=TCONS_00027110|Name=TCONS_00027110|organism=Clytia hemisphaerica|type=transcript|length=643bp
tctttattcatgatattcataacATTCATGACGTATTGTTCTCTACGAAA
AAAACCCTTATTTTGCctgtagtggcaaattttatacaacttttgtctag
catttccgtagaaaacattacgtcatgcatatcatgaattcatcCTTTTG
TCGTCATGATAAGGCTGGTTGTATATATGGTCAGCTATTTATAATTTCCC
CTTTTCAATTGATGTGGTTTTCCCTTCATACGTCAAACAGTTCAgtttat
ttgatattatttACCGACTTAATGTATTATTGATATATCATTCATGCAGA
GCATCATGATTAAGATTAAATCGGTTAGACTTATTAAGGAAAAACAAGGA
AAGATTTAGTCGGAAGAATACGGCTATGAAATACTTTTACTGTTTGATAG
GGGCAATAACACGGTCTTGCCATGTGAACAATCCAGATCTATTTTCTGCT
CGTCTGCCTGCCTGTCTGTATGTCTCCCAGTCTTTTCGCAACTTTATCAA
ATGACTGAAGAATTTCTGCAAAAATACATGAGGttataagtaatagttat
cgcacagtacagagtacaatatgggctatatttttcgagttcagattttt
cgGGATTAGATACAAAAGTAAAGTAAAAAATTTAATCTCTCGC
Run BLAST on NCBI

transcript from alignment at sc0000606:151984..152943-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027110 ID=TCONS_00027110|Name=TCONS_00027110|organism=Clytia hemisphaerica|type=transcript|length=960bp|location=Sequence derived from alignment at sc0000606:151984..152943- (Clytia hemisphaerica)
TCTTTATTCATGATATTCATAACATTCATGACGTATTGTTCTCTACGAAA
AAAACCCTTATTTTGCCTGTAGTGGCAAATTTTATACAACTTTTGTCTAG
CATTTCCGTAGAAAACATTACGTCATGCATATCATGAATTCATCCTTTTG
TCGTCATGATAAGGCTGGTTGTATATATGGTCAGCTATTTATAATTTCCC
CTTTTCAATTGATGTGGTTTTCCCTTCATACGTCAAACAGTTCAGTTTAT
TTGATATTATTTACCGACTTAATGTATTATTGATATATCATTCATGCAGA
GCATCATGATTAAGATTAAATCGGTTAGACTTATTAAGGAAAAACAAGGA
AAGATTTAGTCGGAAGAATACGGCTATGAAATACTTTTACTGTTTGATAG
GGGCAATAACACGGTCTTGCCATGTGAACAATCCAGATCTATTTTCTGCT
CGTCTGCCTGCCTGTCTGTATGTCTCCCAGTCTTTTCGCAACTTTATCAA
ATGACTGAAGAATTTCTGCAAAAATACATGAGGTTATAAGTAGNTCAGTT
TATTTGATATTATTTACCGACTTAATGTATTATTAATATATCATTCATGC
ATAGCATCACGATTATGAATAAATTGATCAGACTATATTGATCTTATTAG
GAAAAATAAGGAAATATTTGGTCGGAAGAATACGGCTATGAAATACTTTT
ACTTTTTAATAGGGGCAATAACACGGTCTTGCCATGTGAACAATCCAGAT
CTTTTTTCTGTTCGTCTGACTGCCTGCCTGTCTGTCTGTCTCCCAGTCTT
TTTCGCAACTTTATCAAATGACTGTAGAATTTCTGCAAAAATAAAAGAGG
TTATAAGTAATAGTTATCGCACAGTACAGAGTACAATATGGGCTATATTT
TTCGAGTTCAGATTTTTCGGGATTAGATACAAAAGTAAAGTAAAAAATTT
AATCTCTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015233XLOC_015233Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027110-exon-sc0000606-1575043694:152412..152943TCONS_00027110-exon-sc0000606-1575043694:152412..152943Clytia hemisphaericaexon
TCONS_00027110-exon-sc0000606-1575043694:151984..152094TCONS_00027110-exon-sc0000606-1575043694:151984..152094Clytia hemisphaericaexon
TCONS_00027110-exon-sc0000606-1510915933:152412..152943TCONS_00027110-exon-sc0000606-1510915933:152412..152943Clytia hemisphaericaexon
TCONS_00027110-exon-sc0000606-1510915933:151984..152094TCONS_00027110-exon-sc0000606-1510915933:151984..152094Clytia hemisphaericaexon
TCONS_00027110-exon-sc0000606-1491911889:152412..152943TCONS_00027110-exon-sc0000606-1491911889:152412..152943Clytia hemisphaericaexon
TCONS_00027110-exon-sc0000606-1491911889:151984..152094TCONS_00027110-exon-sc0000606-1491911889:151984..152094Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000606supercontigsc0000606:151984..152943 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.572222	0.876867	0.555342	0.271658	0	0.0871123	0.105097	0	0.137771	0	0.579737	0.217769	0.108733	0	0.0928361	0.258579	0.184099	0	0	0	0.71133	0.693923	0	0.340851	0	0.15666	1.79344	0.119625	0.0907316	0.184882
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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