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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027159 ID=TCONS_00027159|Name=TCONS_00027159|organism=Clytia hemisphaerica|type=transcript|length=777bp
AATCCATATCATTCCTTTGTCTATTGGTGGACACAGTGTTGGGTTTGATT
TGTCAAAAATGCACCTCGACCAGCATAAGGAATTGCGATAGACATATTCA
AAACATGACGTGTATTTACCCAATGGATATCTGTATTACCATGACAACAT
CATACACAATCAGAAAACAAAATGGCATCCGAGAAACGATAAGTGAAGTT
ACCAAGAGGTGTGCTTTGAGTAAATATGGTTGTGAAAATATGTGCAATGT
GCAGCCGGGCCATAATTGTCAGGTAAGACCTGtgattgggctattccaga
aatagtctgtaccccctatgttgagaaGGTATGACATCCAGGGTTTGTTG
AATgataaaatccagggtggtcagtcaAATCGAATTGAAAATGCAGGGTG
GTCAAGTAcaacgaggtcgaaaatccagggtggtcagtataacgaggtcg
aaaatccagggtggtccaaagaaATGGCAGAAAAATATCCAAAGGGctcc
tgaaaaattggaaaaaaatccagaaGGGGgtcaactttaaaaaaaaagat
ctcctcaacatagggggtgcAAATTCTTTCTGGAATAGCTTATTAATTAC
ATTATCACTTTCCTAAGGCATATGGTATACATTCTCGATTGATAGGCCTA
GGCCTAATCCATGCTTAGAGGTAAAGGTACACATCACTGATTCGTGATGT
GCTCATAAATACGAAGTAAAGAAAATCGAAATTATAACTTACGACGACCA
AAATTACCATTCTTATATCAATTTGAC Run BLAST on NCBI transcript from alignment at sc0000608:94760..96886+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027159 ID=TCONS_00027159|Name=TCONS_00027159|organism=Clytia hemisphaerica|type=transcript|length=2127bp|location=Sequence derived from alignment at sc0000608:94760..96886+ (Clytia hemisphaerica)
AATCCATATCATTCCTTTGTCTATTGGTGGACACAGGTATAAGTTttttt
actgatttcttgagTTTTAAgagcaattttattttttcaaaacttagaaa
caGGGTtgtctttaaaggttttatttttacataagtcagtctgtgccact
aactcgatcgggaagattcttccaaaattggaagattcttccgaaattgG
AAGAATCctcccgaacgggaaattaacCTAACACCCAAACGGGTTAACGG
ACTTCCAGATCGGGAAGAAGCGAGAAACTAAGGAAAACTCGATCGGGTTG
Gaacttcccgtttgggaagtttacgcagttttttcacaatttaacaagat
ttctacggtaaagtctacttttctttcggtgaaaaaccttaaaacttGAT
GCTTCTTCACCTCCAAAAAGTTTAaactttcgccggtcatcgtacTGCTT
CGCCGagattcagtcaattttcaacttcccaaagaggaagaatcttccaa
aacgggcagaaaaaaatagagttagttcttcccgttcgggaaggttcttc
ccatttcggaagaatcttcccgattgagttagtggcacagactgtaagtg
tacacatatttcatatcaggacagtgtctgcctattgttatattatgctg
atataagcaaaaaaaatgtttttcttttcctctttctgagcAACTTTGTT
CCACAACAGTGTCAATCTAATgtgaaaagcttgtaaattaaagttGATGA
ATCagaaaacgatatcactcttatttaaaaacaaaacctttaagcaaGTA
TTCAATCtaatttcaataatattttcatttccaGCAGCCCTGTTTTCTAC
GTTTTGAAGAGACagtgaaaagttttattttggtcgtagcccggggtcca
ctaaAAAGCTTTATTATAGATTGGATGGCGCTATTAAGTGGCCcagtagt
atatggtaatatgcttttgcttggGCGGaatgtaaaacagtccgccagat
tttcgttgttttttccaggtaaaaaaagaatgaagcaatgtttttatttg
aaaataagggattctaaatctgttattgatgtttgtttctcattcttaAT
TATATTCTTCAACTTCAAGTAGCTTTTTAGTTActtggattttaaacatt
ttctttttcaaaatgacaaactCGCTAAATGCTGCTAGTCTATTTTGGTC
GTTGATTGGCGAAAAGACAGCGCTTTTTTCTCTTAGTCCAGTTCCTCTAC
CTCAAAGGAAACCAAAAAATGACGTTCTCCTCCTCCTTCAAAAGCACCTT
AGTAGAATCTGGTGAGTAATACAATAGGAAATTATCAAACTTGGCTGTTC
TTAAAATTTCTATACTATGATTTTCTTGCTTTGTAGTGTTGGGTTTGATT
TGTCAAAAATGCACCTCGACCAGCATAAGGAATTGCGATAGACATATTCA
AAACATGACGTGTATTTACCCAATGGATATCTGTATTACCATGACAACAT
CATACACAATCAGAAAACAAAATGGCATCCGAGAAACGATAAGTGAAGTT
ACCAAGAGGTGTGCTTTGAGTAAATATGGTTGTGAAAATATGTGCAATGT
GCAGCCGGGCCATAATTGTCAGGTAAGACCTGtgattgggctattccaga
aatagtctgtaccccctatgttgagaaGGTATGACATCCAGGGTTTGTTG
AATgataaaatccagggtggtcagtcaAATCGAATTGAAAATGCAGGGTG
GTCAAGTAcaacgaggtcgaaaatccagggtggtcagtataacgaggtcg
aaaatccagggtggtccaaagaaATGGCAGAAAAATATCCAAAGGGctcc
tgaaaaattggaaaaaaatccagaaGGGGgtcaactttaaaaaaaaagat
ctcctcaacatagggggtgcAAATTCTTTCTGGAATAGCTTATTAATTAC
ATTATCACTTTCCTAAGGCATATGGTATACATTCTCGATTGATAGGCCTA
GGCCTAATCCATGCTTAGAGGTAAAGGTACACATCACTGATTCGTGATGT
GCTCATAAATACGAAGTAAAGAAAATCGAAATTATAACTTACGACGACCA
AAATTACCATTCTTATATCAATTTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027159-exon-sc0000608-1491911889:94760..94795 | TCONS_00027159-exon-sc0000608-1491911889:94760..94795 | Clytia hemisphaerica | exon |
| TCONS_00027159-exon-sc0000608-1510915933:94760..94795 | TCONS_00027159-exon-sc0000608-1510915933:94760..94795 | Clytia hemisphaerica | exon |
| TCONS_00027159-exon-sc0000608-1575043694:94760..94795 | TCONS_00027159-exon-sc0000608-1575043694:94760..94795 | Clytia hemisphaerica | exon |
| TCONS_00027159-exon-sc0000608-1491911889:96146..96886 | TCONS_00027159-exon-sc0000608-1491911889:96146..96886 | Clytia hemisphaerica | exon |
| TCONS_00027159-exon-sc0000608-1510915933:96146..96886 | TCONS_00027159-exon-sc0000608-1510915933:96146..96886 | Clytia hemisphaerica | exon |
| TCONS_00027159-exon-sc0000608-1575043694:96146..96886 | TCONS_00027159-exon-sc0000608-1575043694:96146..96886 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000608 | supercontig | sc0000608:94760..96886 + |
Blast
The following BLAST results are available for this feature:
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