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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027160 ID=TCONS_00027160|Name=TCONS_00027160|organism=Clytia hemisphaerica|type=transcript|length=423bp
AATCCATATCATTCCTTTGTCTATTGGTGGACACAGTGTTGGGTTTGATT
TGTCAAAAATGCACCTCGACCAGCATAAGGAATTGCGATAGACATATTCA
AAACATGACGTGTATTTACCCAATGGATATCTGTATTACCATGACAACAT
CATACACAATCAGAAAACAAAATGGCATCCGAGAAACGATAAGTGAAGTT
ACCAAGAGGTGTGCTTTGAGTAAATATGGTTGTGAAAATATGTGCAATGT
GCAGCCGGGCCATAATTGTCAGATTGGTTGTTGTACAGGGAACTTCTGCA
ATCGAACGCCTGACCCACGAATTCTGAGAAGTATCAACAACTCTATCAAT
TTACGCGAACACAAGCTATTTcgtattttaaagattttattcacttgttc
ttttgtcataatgtatcttcaaa Run BLAST on NCBI protein sequence of TCONS_00027160-protein >TCONS_00027160-protein ID=TCONS_00027160-protein|Name=TCONS_00027160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
SISFLCLLVDTVLGLICQKCTSTSIRNCDRHIQNMTCIYPMDICITMTTS
YTIRKQNGIRETISEVTKRCALSKYGCENMCNVQPGHNCQIGCCTGNFCN
RTPDPRILRSINNSINLREHKLFRILKILFTCSFVIMYLQ Run BLAST on NCBI transcript from alignment at sc0000608:94760..97556+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027160 ID=TCONS_00027160|Name=TCONS_00027160|organism=Clytia hemisphaerica|type=transcript|length=2797bp|location=Sequence derived from alignment at sc0000608:94760..97556+ (Clytia hemisphaerica)
AATCCATATCATTCCTTTGTCTATTGGTGGACACAGGTATAAGTTttttt
actgatttcttgagTTTTAAgagcaattttattttttcaaaacttagaaa
caGGGTtgtctttaaaggttttatttttacataagtcagtctgtgccact
aactcgatcgggaagattcttccaaaattggaagattcttccgaaattgG
AAGAATCctcccgaacgggaaattaacCTAACACCCAAACGGGTTAACGG
ACTTCCAGATCGGGAAGAAGCGAGAAACTAAGGAAAACTCGATCGGGTTG
Gaacttcccgtttgggaagtttacgcagttttttcacaatttaacaagat
ttctacggtaaagtctacttttctttcggtgaaaaaccttaaaacttGAT
GCTTCTTCACCTCCAAAAAGTTTAaactttcgccggtcatcgtacTGCTT
CGCCGagattcagtcaattttcaacttcccaaagaggaagaatcttccaa
aacgggcagaaaaaaatagagttagttcttcccgttcgggaaggttcttc
ccatttcggaagaatcttcccgattgagttagtggcacagactgtaagtg
tacacatatttcatatcaggacagtgtctgcctattgttatattatgctg
atataagcaaaaaaaatgtttttcttttcctctttctgagcAACTTTGTT
CCACAACAGTGTCAATCTAATgtgaaaagcttgtaaattaaagttGATGA
ATCagaaaacgatatcactcttatttaaaaacaaaacctttaagcaaGTA
TTCAATCtaatttcaataatattttcatttccaGCAGCCCTGTTTTCTAC
GTTTTGAAGAGACagtgaaaagttttattttggtcgtagcccggggtcca
ctaaAAAGCTTTATTATAGATTGGATGGCGCTATTAAGTGGCCcagtagt
atatggtaatatgcttttgcttggGCGGaatgtaaaacagtccgccagat
tttcgttgttttttccaggtaaaaaaagaatgaagcaatgtttttatttg
aaaataagggattctaaatctgttattgatgtttgtttctcattcttaAT
TATATTCTTCAACTTCAAGTAGCTTTTTAGTTActtggattttaaacatt
ttctttttcaaaatgacaaactCGCTAAATGCTGCTAGTCTATTTTGGTC
GTTGATTGGCGAAAAGACAGCGCTTTTTTCTCTTAGTCCAGTTCCTCTAC
CTCAAAGGAAACCAAAAAATGACGTTCTCCTCCTCCTTCAAAAGCACCTT
AGTAGAATCTGGTGAGTAATACAATAGGAAATTATCAAACTTGGCTGTTC
TTAAAATTTCTATACTATGATTTTCTTGCTTTGTAGTGTTGGGTTTGATT
TGTCAAAAATGCACCTCGACCAGCATAAGGAATTGCGATAGACATATTCA
AAACATGACGTGTATTTACCCAATGGATATCTGTATTACCATGACAACAT
CATACACAATCAGAAAACAAAATGGCATCCGAGAAACGATAAGTGAAGTT
ACCAAGAGGTGTGCTTTGAGTAAATATGGTTGTGAAAATATGTGCAATGT
GCAGCCGGGCCATAATTGTCAGGTAAGACCTGtgattgggctattccaga
aatagtctgtaccccctatgttgagaaGGTATGACATCCAGGGTTTGTTG
AATgataaaatccagggtggtcagtcaAATCGAATTGAAAATGCAGGGTG
GTCAAGTAcaacgaggtcgaaaatccagggtggtcagtataacgaggtcg
aaaatccagggtggtccaaagaaATGGCAGAAAAATATCCAAAGGGctcc
tgaaaaattggaaaaaaatccagaaGGGGgtcaactttaaaaaaaaagat
ctcctcaacatagggggtgcAAATTCTTTCTGGAATAGCTTATTAATTAC
ATTATCACTTTCCTAAGGCATATGGTATACATTCTCGATTGATAGGCCTA
GGCCTAATCCATGCTTAGAGGTAAAGGTACACATCACTGATTCGTGATGT
GCTCATAAATACGAAGTAAAGAAAATCGAAATTATAACTTACGACGACCA
AAATTACCATTCTTATATCAATTTGACATGTTTATCATATCCGAAGTGTA
TGCCGTGTAAAGTAccctaaaacaaaacaaaatgatagATTCTTAGCAGA
TTAAGTTAATGAAGAGATATTTTGGGATTAAAGAGACAAATTTTTACGGA
TTTccctcaaaataattattttttagaattaaCTCTAtccaaagttaaaa
atttcCTCAATGAACCAAAATAAATCCCACCAATTTGCATGAAATTGGCG
AATTGATCTATTTAGTAAGTTTCTTTTCTTAAGGTTATTCCCTGAGAAGA
ACCTCTACGACGCATgccacacgttttttataagaacaaactatataaga
atataagctCTGATGACAAAAAcattcagaacattttaaggatttgcaga
ctctagaacacccgatttcttaggaaaaaacTCAGTCCACGAATGTTtga
aacttgttcttaacattttggccatcgaagccttatgttcttatatagtt
tgttcttgtaaaaatgtACTAGTCATGTTTTATTCAATTTCTTTAGATTG
GTTGTTGTACAGGGAACTTCTGCAATCGAACGCCTGACCCACGAATTCTG
AGAAGTATCAACAACTCTATCAATTTACGCGAACACAAGCTATTTcgtat
tttaaagattttattcacttgttcttttgtcataatgtatcttcaaa Coding sequence (CDS) from alignment at sc0000608:94760..97556+ >TCONS_00027160 ID=TCONS_00027160|Name=TCONS_00027160|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at sc0000608:94760..97556+ (Clytia hemisphaerica)
TCCATATCATTCCTTTGTCTATTGGTGGACACAGTGTTGGGTTTGATTTG
TCAAAAATGCACCTCGACCAGCATAAGGAATTGCGATAGACATATTCAAA
ACATGACGTGTATTTACCCAATGGATATCTGTATTACCATGACAACATCA
TACACAATCAGAAAACAAAATGGCATCCGAGAAACGATAAGTGAAGTTAC
CAAGAGGTGTGCTTTGAGTAAATATGGTTGTGAAAATATGTGCAATGTGC
AGCCGGGCCATAATTGTCAGATTGGTTGTTGTACAGGGAACTTCTGCAAT
CGAACGCCTGACCCACGAATTCTGAGAAGTATCAACAACTCTATCAATTT
ACGCGAACACAAGCTATTTcgtattttaaagattttattcacttgttctt
ttgtcataatgtatcttcaaTCCATATCATTCCTTTGTCTATTGGTGGAC
ACAGTGTTGGGTTTGATTTGTCAAAAATGCACCTCGACCAGCATAAGGAA
TTGCGATAGACATATTCAAAACATGACGTGTATTTACCCAATGGATATCT
GTATTACCATGACAACATCATACACAATCAGAAAACAAAATGGCATCCGA
GAAACGATAAGTGAAGTTACCAAGAGGTGTGCTTTGAGTAAATATGGTTG
TGAAAATATGTGCAATGTGCAGCCGGGCCATAATTGTCAGATTGGTTGTT
GTACAGGGAACTTCTGCAATCGAACGCCTGACCCACGAATTCTGAGAAGT
ATCAACAACTCTATCAATTTACGCGAACACAAGCTATTTcgtattttaaa
gattttattcacttgttcttttgtcataatgtatcttcaaTCCATATCAT
TCCTTTGTCTATTGGTGGACACAGTGTTGGGTTTGATTTGTCAAAAATGC
ACCTCGACCAGCATAAGGAATTGCGATAGACATATTCAAAACATGACGTG
TATTTACCCAATGGATATCTGTATTACCATGACAACATCATACACAATCA
GAAAACAAAATGGCATCCGAGAAACGATAAGTGAAGTTACCAAGAGGTGT
GCTTTGAGTAAATATGGTTGTGAAAATATGTGCAATGTGCAGCCGGGCCA
TAATTGTCAGATTGGTTGTTGTACAGGGAACTTCTGCAATCGAACGCCTG
ACCCACGAATTCTGAGAAGTATCAACAACTCTATCAATTTACGCGAACAC
AAGCTATTTcgtattttaaagattttattcacttgttcttttgtcataat
gtatcttcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027160-exon-sc0000608-1491911889:94760..94795 | TCONS_00027160-exon-sc0000608-1491911889:94760..94795 | Clytia hemisphaerica | exon |
| TCONS_00027160-exon-sc0000608-1510915933:94760..94795 | TCONS_00027160-exon-sc0000608-1510915933:94760..94795 | Clytia hemisphaerica | exon |
| TCONS_00027160-exon-sc0000608-1575043694:94760..94795 | TCONS_00027160-exon-sc0000608-1575043694:94760..94795 | Clytia hemisphaerica | exon |
| TCONS_00027160-exon-sc0000608-1491911889:96146..96381 | TCONS_00027160-exon-sc0000608-1491911889:96146..96381 | Clytia hemisphaerica | exon |
| TCONS_00027160-exon-sc0000608-1510915933:96146..96381 | TCONS_00027160-exon-sc0000608-1510915933:96146..96381 | Clytia hemisphaerica | exon |
| TCONS_00027160-exon-sc0000608-1575043694:96146..96381 | TCONS_00027160-exon-sc0000608-1575043694:96146..96381 | Clytia hemisphaerica | exon |
| TCONS_00027160-exon-sc0000608-1491911889:97406..97556 | TCONS_00027160-exon-sc0000608-1491911889:97406..97556 | Clytia hemisphaerica | exon |
| TCONS_00027160-exon-sc0000608-1510915933:97406..97556 | TCONS_00027160-exon-sc0000608-1510915933:97406..97556 | Clytia hemisphaerica | exon |
| TCONS_00027160-exon-sc0000608-1575043694:97406..97556 | TCONS_00027160-exon-sc0000608-1575043694:97406..97556 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000608 | supercontig | sc0000608:94760..97556 + |
Blast
The following BLAST results are available for this feature:
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