|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027163 ID=TCONS_00027163|Name=TCONS_00027163|organism=Clytia hemisphaerica|type=transcript|length=956bp
GACTTTATCACATTATACATAAGATCTTTTTCTGAGAAAGTACTTTTTTC
GAGACACGTTGTATATTGAAACAAAATCAGCAAAATTACAAAGTTACAAC
GAAAAGCCAGTGAAAATAAACGactagattttttattttatttcaatctt
tatttcatgtaaaaaattaatacaaattcaaaataattaacAGTTAAAAA
TCATCTTTATGGGTAGTTGTTTCCATGATTCAATGATAACCCTTCACCTA
ATTCATAATCAAAGCTTCCAGTAATCGTTTACCATTGATAGGCAGGTTTA
TAACTCCTTCTTTGACAGAGTTTTCCAGTGAATCCTTTCTTGCATTCACA
TTTGAAACCGTTGACAAGATctttgcattttcctccgttcTTGCAGCTAT
TTCTCTTGCAATCGTTGATGTTGGTTTGACAGAATTTTCCAGTGAATCCT
TTCTTGCATTCACATTTGAAACCATTGACAAGATctttgcattttcctcc
gttcTTGCAGCTATTTCTCTTGCAATCATTGACGTTAGTTTGACAGAACT
TTCCAGTGAATCCTTTCTTGCATTGACATTTGAAACCATTGACAAGATct
ttgcattttcctccgttcTTGCAGCTATTTCTCTTGCAATCGTTGATGTT
GGTTTGACAGAATTTGCCAGTAAATCCTTTTTTGCATTCACATTTGAAAC
CATTGACAAGATctttgcattttcctccgttcTTACAGCTATTTCTCTTG
CAATCGTTGATGTTGGTTTGACAGAATTTTCCTGTGAATCCTTTCTTGCA
TTCACAATTGAAACCATTGACAAGATctttgcattttcctccgttcTTGC
AGATATTTCTCTTGCAATCATTGATGTTGGTTTGACAGAACTTTCCAGTG
AATCCTTTCTTGCATTCACATTTGAAAGAGGTATAAAGGCTTCTGCAGTT
TCCACC Run BLAST on NCBI transcript from alignment at sc0000608:115842..118571+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027163 ID=TCONS_00027163|Name=TCONS_00027163|organism=Clytia hemisphaerica|type=transcript|length=2730bp|location=Sequence derived from alignment at sc0000608:115842..118571+ (Clytia hemisphaerica)
GACTTTATCACATTATACATAAGATCTTTTTCTGAGAAAGTACTTTTTTC
GAGACACGTTGTATATTGAAACAAAATCAGCAAAATTACAAAGTTACAAC
GAAAAGCCAGTGAAAATAAACGactagattttttattttatttcaatctt
tatttcatgtaaaaaattaatacaaattcaaaataattaacAGTTAAAAA
TCATCTTTATGGGTAGTTGTTTCCATGATTCAATGATAACCCTTCACCTA
ATTCATAATCAAAGCTTCCAGTAATCGTTTACCATTGATAGGCAGGTTTA
TAACTCCTTCTTTGACAGAGTTTTCCAGTGAATCCTTTCTTGCATTCACA
TTTGAAACCGTTGACAAGATctttgcattttcctccgttcTTGCAGCTAT
TTCTCTTGCAATCGTTGATGTTGGTTTGACAGAATTTTCCAGTGAATCCT
TTCTTGCATTCACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTCTTGCATTCACATTTGAAACCATTGACAAGATctttgc
attttcctccgttcTTGCAGCTATTTCTCTTGCAATCATTGATGTTGGTT
TGACAGAATTTTCCATTGAATCCTTTCTTGCATTCACATTTGAAACCATT
GACAAGATctttgcattttcctccgttcTTGCAGCTATTTCTCTTGCAAT
CATTGACGTTAGTTTGACAGAACTTTCCAGTGAATCCTTTCTTGCATTGA
CATTTGAAACCATTGACAAGATctttgcattttcctccgttcTTGCAGCT
ATTTCTCTTGCAATCGTTGATGTTGGTTTGACAGAATTTGCCAGTAAATC
CTTTTTTGCATTCACATTTGAAACCATTGACAAGATctttgcattttcct
ccgttcTTACAGCTATTTCTCTTGCAATCGTTGATGTTGGTTTGACAGAA
TTTTCCTGTGAATCCTTTCTTGCATTCACAATTGAAACCATTGACAAGAT
ctttgcattttcctccgttcTTGCAGATATTTCTCTTGCAATCATTGATG
TTGGTTTGACAGAACTTTCCAGTGAATCCTTTCTTGCATTCACATTTGAA
AGAGGTATAAAGGCTTCTGCAGTTTCCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027163-exon-sc0000608-1491911889:115842..116304 | TCONS_00027163-exon-sc0000608-1491911889:115842..116304 | Clytia hemisphaerica | exon |
| TCONS_00027163-exon-sc0000608-1510915933:115842..116304 | TCONS_00027163-exon-sc0000608-1510915933:115842..116304 | Clytia hemisphaerica | exon |
| TCONS_00027163-exon-sc0000608-1575043694:115842..116304 | TCONS_00027163-exon-sc0000608-1575043694:115842..116304 | Clytia hemisphaerica | exon |
| TCONS_00027163-exon-sc0000608-1491911889:118079..118571 | TCONS_00027163-exon-sc0000608-1491911889:118079..118571 | Clytia hemisphaerica | exon |
| TCONS_00027163-exon-sc0000608-1510915933:118079..118571 | TCONS_00027163-exon-sc0000608-1510915933:118079..118571 | Clytia hemisphaerica | exon |
| TCONS_00027163-exon-sc0000608-1575043694:118079..118571 | TCONS_00027163-exon-sc0000608-1575043694:118079..118571 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000608 | supercontig | sc0000608:115842..118571 + |
Blast
BLAST of TCONS_00027163 vs. Swiss-Prot (Human)
Match: SVEP1 (Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Homo sapiens GN=SVEP1 PE=1 SV=3) HSP 1 Score: 206.453 bits (524), Expect = 1.684e-58 Identity = 99/214 (46.26%), Postives = 132/214 (61.68%), Query Frame = -1
Query: 312 GNCRSLYTSFKCECKKGFTGKFCQTNINDCKRNICKNGGKCKDLVNGFNCECKKGFTGKFCQTNINDCKRNSCKNGGKCKDLVNGFKCECKKGFTGKFCQTNINDCKRNSCKNGGKCKDLVNGFKCQCKKGFTGKFCQTNVNDCKRNSCKNGGKCKDLVNGFKCECKKGFTGKFCQTNINDCKRNSCKNGGKCKDLVNGFKCECKKGFTGKLCQ 953
G C+ L + C C G+TG C+T+I++C C N G CKDLV F CEC G+TG+ C+ NIN+C + C N G C D V G++C C KGF G C+T +N+C+ N C N C+D V GF C+C GF G C NV++C CKNG CKD N F+C C GFTG C+ NIN+C+ N C+N C D +N + C+C+ GF+GK C+
Sbjct: 1206 GTCQQLGRGYVCLCPLGYTGLKCETDIDECSPLPCLNNGVCKDLVGEFICECPSGYTGQRCEENINECSSSPCLNKGICVDGVAGYRCTCVKGFVGLHCETEVNECQSNPCLNNAVCEDQVGGFLCKCPPGFLGTRCGKNVDECLSQPCKNGATCKDGANSFRCLCAAGFTGSHCELNINECQSNPCRNQATCVDELNSYSCKCQPGFSGKRCE 1419 HSP 2 Score: 177.948 bits (450), Expect = 1.119e-48 Identity = 87/187 (46.52%), Postives = 113/187 (60.43%), Query Frame = -1
Query: 312 NDCKRNICKNGGKCKDLVNGFNCECKKGFTGKFCQTNINDCKRNSCKNGGKCKDLVNGFKCECKKGFTGKFCQTNINDCKRNSCKNGGKCKDLVNGFKCQCKKGFTGKFCQTNVNDCKRNSCKNGGKCKDLVNGFKCECKKGFTGKFCQTNINDCKRNSCKNGGKCKDLVNGFKCECKKGFTGKLCQ 872
++C N C N G C+ L G+ C C G+TG C+T+I++C C N G CKDLV F CEC G+TG+ C+ NIN+C + C N G C D V G++C C KGF G C+T VN+C+ N C N C+D V GF C+C GF G C N+++C CKNG CKD N F+C C GFTG C+
Sbjct: 1195 HECFFNPCHNSGTCQQLGRGYVCLCPLGYTGLKCETDIDECSPLPCLNNGVCKDLVGEFICECPSGYTGQRCEENINECSSSPCLNKGICVDGVAGYRCTCVKGFVGLHCETEVNECQSNPCLNNAVCEDQVGGFLCKCPPGFLGTRCGKNVDECLSQPCKNGATCKDGANSFRCLCAAGFTGSHCE 1381
The following BLAST results are available for this feature:
|
