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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027235 ID=TCONS_00027235|Name=TCONS_00027235|organism=Clytia hemisphaerica|type=transcript|length=1582bp
CGCcaattgaatgtatttttgtatATCTTTATTCAACTTTAGATAGataa
tataaaacaaaaacaatggcTTGTTTTATACTACActtattgttgttgtt
tatgTTAAAAATACCACATCAATTTTCTTTGACAATTGACACGTTCGCAA
GCTCAACAACAGTGCACGTTTCACCGAAAGGGAGAGATGAAGAAAACTGC
GGCTGGATgcacaaaaaatgtcaaacaatTGATCATGTTTTGAAAGAATC
TAAAAGTAGcaatttgaaattgattttagAGAACTCTCAGACTCAAAGTA
TTGTTTATCACACTCAAGGAATGTTACGTCCTGacattgattattttcag
ctaCGAATTGCaaaagaaaaccaaaatggAACAAACCCGACTATATTTGG
AAATGAATTACCCTTCATTCAACCCAAAGGTGCTTTTAGTCTATTTATTG
ATCAGGTCGACTTTCAGAATGTCATAATTGTTAACTCTATGAATCAAGAC
TCAAGCATGACCATATCTTTTCGAAACTTGAATATTAGGACAGAGTTAAC
AGGAAATTTCATATCCACCACCAACACAAACAGCAATCTTAAAGTTACTT
TACAATCTTGTGTTTTGATATCATCGACCAGGAATGCGTGGTTGAAGATA
TCAATGAAAAAAGCGACTTCGTTTAAATCAATCATCAAATTAACCAACAA
CACCATTATTCGTGGAGGGGTATTTATAATAAAAAACGTTGATGTACTTG
ATTTTTCACAAACAAAAATACATAATATGGTAACTGATATCTTAAACGAG
AACACGGATAAATCCTTAGATTTTATGTTATACTTAGAGCATATCAAAAA
CGCAGTTTTCCGTGACGAAACAACGATAAAGAGTTctacatttaaaaatt
ttatgctTGCATATGATTCGTTTGTATGGATGCAAAACTTTAACTTTCAT
GAAACAAACGTCGAAAATTTAATTATTAGTCGAGACTCGTCTTTAACAAT
TAGCAGATTTGAATTGCACAATACAACAATAAACGAATGGGCATGCTTTT
TATGGAATAGCAATTACAATGTAAATGAAGCTCGAGTTGTGGACAGTGTT
CTGAAGATGCGTCTCGTCAGTTCTCTAATATCGAGTAATGTAACAATTCA
AAGCATCGAATTGCAGAATACAACAGTTTATGGATCTGCATTCTTCGTAT
CGGAAAGCATCTTCAAGGCAAATGAAATCCGAGTGGTTGACTGTGTTATG
GAAGAGACATTCTACGTATGGGGAGGCATCTTCAACGCAAATAAAATCCG
AATTGTTGACTCTACATTACTAGGATTGGTGTATTTAAGAACTAAAAGTA
ATATCACCATAAAATATATATCTATGAACAAGACtgatataaaagaaaca
tttgTCGCTTCATATGAATTCAGTAAATCCACGATTACAAATGTAACGAT
TCACGAAAGTAGGATTATAGGTAGAATGTTTTACCTTGCAGAAAGAAGTA
atattatacttaaaaatgcaACAATATTTGACACTAAAATCGGTCAAGAT
ATGTTTTACTTGTATGAAAGCACGGTAACACT Run BLAST on NCBI transcript from alignment at sc0000611:173913..176736- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027235 ID=TCONS_00027235|Name=TCONS_00027235|organism=Clytia hemisphaerica|type=transcript|length=2824bp|location=Sequence derived from alignment at sc0000611:173913..176736- (Clytia hemisphaerica)
CGCCAATTGAATGTATTTTTGTATATCTTTATTCAACTTTAGATAGATAA
TATAAAACAAAAACAATGGCTTGTTTTATACTACACTTATTGTTGTTGTT
TATGTTAAAAATACCACATCAATTTTCTTTGACAATTGGTAAGTCTCGAA
CAAGATTTTTCATTGTTATTTTTCGTGCTAGTAGTCTTATGCTAGTCTTT
AAAAAATGGTTTCCTGTCAACTGGCAACCCTAATCGAAACCTGAAATCCT
TTAAAATATTGTTTTCGAATAATAGATTTTTTTGGTCAGAGTATTGCAAC
TAGAGAATGACTATCACTAGAGGAGCCCCAGAGGAGCTACATCTAGTAAA
ATAGTTTACAAACGAAAACCAAGAATGCTAATCCTTAGACCCAGGGGTAG
AATCTACCACGTTGATGTTCTTTTATGTGCAATTCTGAGAAAATCTTTGA
AACGATTTGAAACTTTTAGACTTTTAATGAAATCTGATTGAGAGTACTTG
TGCAAATTCTTAGGGTCATAGATTGTCTAGATCAGGCATGATGACTTTAT
TGTGAAAACATGACATAAAAACCAGCATAAATCGCTTAACACTCGCAATT
TTAAAATGGTTCTGAAATAATTATCCAATCATATTCAAATTTTGACACGT
GATATGTATCGACAATATGAATTTGAAAATTAAAAAAGAAATTGTTGAAA
TAATGACGTCATCAAATTTTCAAAATATTACTCATCTTCAGCATGGATTT
TAAACAGAAAGCCCTCAGCTGGTCAGGTTTCCCTTTTTACGAGTCACAAA
TTTACTAGTTTTCAAAATGTGTATCTGAAAGTCAACTTTTGGTAATTTTT
GAAAATTTTCTGCGTGATTTTTCGTCAACTCTTAGTCCATTTGGTTAATT
TTCAGGGTAAAAATGGAAAATATTTTTGAATTTATTTTCTGCCAGGGTCC
CAAATTTACCAATTATTCATATCTAACAGGGTCCACTTTTCAAATTCCAA
CGGCACGTCCCCGTCGTCAATGTCAGTGCCCCGGCCCCGGCTCTTTATTG
AATCGACTGCGAAAAACATTTTTTTAAACCATACATTTGGGCTCTTTTCC
GACAAGTGGAACTTTTGTAATGACGTCATCGATTTTTGGATGGAGGTCAT
CAATATTTCTTTCCTTCTGGAATTTTGTGCCATGATAGAGAACACCTGTA
CCGATTTTCGTGTCAATAGCTCTTCTAGATCGATTACAAAAGATGGTAGA
TTCTACCCCTGCTGGGGCTACAAAAATCGAAAAAATCTTTGGATAAATAC
GGTTAGTTGAAAAGAACATTATAAATTTCTTTCCAATTGACGTTCTGATG
ACCTAAAGTAATTTTATCCTTCTTTTACAGACACGTTCGCAAGCTCAACA
ACAGTGCACGTTTCACCGAAAGGGAGAGATGAAGAAAACTGCGGCTGGAT
GCACAAAAAATGTCAAACAATTGATCATGTTTTGAAAGAATCTAAAAGTA
GCAATTTGAAATTGATTTTAGAGAACTCTCAGACTCAAAGTATTGTTTAT
CACACTCAAGGAATGTTACGTCCTGACATTGATTATTTTCAGCTACGAAT
TGCAAAAGAAAACCAAAATGGAACAAACCCGACTATATTTGGAAATGAAT
TACCCTTCATTCAACCCAAAGGTGCTTTTAGTCTATTTATTGATCAGGTC
GACTTTCAGAATGTCATAATTGTTAACTCTATGAATCAAGACTCAAGCAT
GACCATATCTTTTCGAAACTTGAATATTAGGACAGAGTTAACAGGAAATT
TCATATCCACCACCAACACAAACAGCAATCTTAAAGTTACTTTACAATCT
TGTGTTTTGATATCATCGACCAGGAATGCGTGGTTGAAGATATCAATGAA
AAAAGCGACTTCGTTTAAATCAATCATCAAATTAACCAACAACACCATTA
TTCGTGGAGGGGTATTTATAATAAAAAACGTTGATGTACTTGATTTTTCA
CAAACAAAAATACATAATATGGTAACTGATATCTTAAACGAGAACACGGA
TAAATCCTTAGATTTTATGTTATACTTAGAGCATATCAAAAACGCAGTTT
TCCGTGACGAAACAACGATAAAGAGTTCTACATTTAAAAATTTTATGCTT
GCATATGATTCGTTTGTATGGATGCAAAACTTTAACTTTCATGAAACAAA
CGTCGAAAATTTAATTATTAGTCGAGACTCGTCTTTAACAATTAGCAGAT
TTGAATTGCACAATACAACAATAAACGAATGGGCATGCTTTTTATGGAAT
AGCAATTACAATGTAAATGAAGCTCGAGTTGTGGACAGTGTTCTGAAGAT
GCGTCTCGTCAGTTCTCTAATATCGAGTAATGTAACAATTCAAAGCATCG
AATTGCAGAATACAACAGTTTATGGATCTGCATTCTTCGTATCGGAAAGC
ATCTTCAAGGCAAATGAAATCCGAGTGGTTGACTGTGTTATGGAAGAGAC
ATTCTACGTATGGGGAGGCATCTTCAACGCAAATAAAATCCGAATTGTTG
ACTCTACATTACTAGGATTGGTGTATTTAAGAACTAAAAGTAATATCACC
ATAAAATATATATCTATGAACAAGACTGATATAAAAGAAACATTTGTCGC
TTCATATGAATTCAGTAAATCCACGATTACAAATGTAACGATTCACGAAA
GTAGGATTATAGGTAGAATGTTTTACCTTGCAGAAAGAAGTAATATTATA
CTTAAAAATGCAACAATATTTGACACTAAAATCGGTCAAGATATGTTTTA
CTTGTATGAAAGCACGGTAACACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027235-exon-sc0000611-1575043694:176599..176736 | TCONS_00027235-exon-sc0000611-1575043694:176599..176736 | Clytia hemisphaerica | exon |
| TCONS_00027235-exon-sc0000611-1575043694:173913..175356 | TCONS_00027235-exon-sc0000611-1575043694:173913..175356 | Clytia hemisphaerica | exon |
| TCONS_00027235-exon-sc0000611-1510915933:176599..176736 | TCONS_00027235-exon-sc0000611-1510915933:176599..176736 | Clytia hemisphaerica | exon |
| TCONS_00027235-exon-sc0000611-1510915933:173913..175356 | TCONS_00027235-exon-sc0000611-1510915933:173913..175356 | Clytia hemisphaerica | exon |
| TCONS_00027235-exon-sc0000611-1491911889:176599..176736 | TCONS_00027235-exon-sc0000611-1491911889:176599..176736 | Clytia hemisphaerica | exon |
| TCONS_00027235-exon-sc0000611-1491911889:173913..175356 | TCONS_00027235-exon-sc0000611-1491911889:173913..175356 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000611 | supercontig | sc0000611:173913..176736 - |
Blast
The following BLAST results are available for this feature:
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