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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027279 ID=TCONS_00027279|Name=TCONS_00027279|organism=Clytia hemisphaerica|type=transcript|length=819bp
ATGCCTTAGTTGTgagttaatttttctttcttgacaaagtgaatTATTTC
GAGTCATTTAAAAATGCCACATTTTCGAAGAATGAAAAGGGAAAGATTTT
ATCTAGAGACTTACTCAAATCCCCCCACTCGTGCAAAAATCATCATTCCA
ATGCTGAATGCTGACAATCTTCGAGGACTTGCTTTTAAACCCATTGCAAA
AGTATTTCAATATTTGCGTTAATTTGGCTGGAAGCTCTTTGTCTTAATGT
AATCtcgtgaaaaataaatataaatagaaTAGAAAAAGGCGTACAAAATA
TACATTACAGAATTTAGTAAGAAAATATCATatgaaaaatatccaaaaat
ccaaaattataACATCTCAAAGTATCAAAAAATGTTTGTCATAAAAAACA
ATATTTCCTGTAGTGCCATTAAAAAATATccctaaatttgaaaatttgac
gtgACTATTTCGACTTAGGCTAGGCTCTTCAAGTTTTACAATTAGTTACA
CCATACAGATTGATTTGTCAAATGTAACTTTCCTTTCAAGTTAATACTGC
AGAAAAACAAGTCGATGGTCGGGTAGTTCGAAGTAAAAAGCTCAgttgaa
tgaaaaataatggTTTTGCTGGTCTAGTGACACTTTGAGCCTCTTACATC
GTGTTATTCAATACAATAATAtgtgcaaaatttaaaaaaaaaataaaaaa
aattgtctttaaatgctttcttttcatttggctGATGTTTGACTGGTTTC
atattttcgtgattttaaggctttaatgatcttaaaatattcttatgtCG
TGCTTTCTTTACTCACTTA Run BLAST on NCBI transcript from alignment at sc0000613:50264..51900+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027279 ID=TCONS_00027279|Name=TCONS_00027279|organism=Clytia hemisphaerica|type=transcript|length=1637bp|location=Sequence derived from alignment at sc0000613:50264..51900+ (Clytia hemisphaerica)
ATGCCTTAGTTGTgagttaatttttctttcttgacaaagtgaatTATTTC
GAGTCATTTAAAAATGCCACATTTTCGAAGAATGAAAAGGGAAAGATTTT
ATCTAGAGACTTACTCAAATCCCCCCACTCGTGCAAAAATCATCATTCCA
ATGCTGAATGCTGACAATCTTCGAGGACTTGCTTTTAAACCCATTGCAAA
AGTATTTCAATATTTGCGTTAATTTGGCTGGAAGCTCTTTGTCTTAATGT
AATCtcgtgaaaaataaatataaatagaaTAGAAAAAGGCGTACAAAATA
TACATTACAGAATTTAGTAAAGGCcgaggtaaacgattccaacatttcat
ccaacattgaaattgaaatgttgAACGAATGTTGGATGAATTTTGGAAAG
GTGTTGGATCTCCTTAAAATCGTTTCGTCGCAATGTCCAACATCATTTTC
ATCCAAATGGGTGTTCATTCAttctttttctaattcattcttttcaaatt
aGAAATGGCGAGAATTTTTATACCCAGTTTAACCAGTGCCACTACTGCTG
TTCATGCGGACAAAAATTATAGTCTAACAATTGGAATTTTAAAATGCAGA
GAAAATTCTGTCGAAAAATCGACTCTTATGGtgcaatttcttgaaattta
tttatatctatttcaaagcaaaaaatggtcaaattttctaaaattttgca
acaaaaactatgttctcattttttacacatatacagtgcattttgggaag
cctgaaaaactaccattttaaatttgttacgagatttttcgaatttttga
ccaaaaaacattcgattctaTTTCTAATGACGTCATTCCCTTTCAATGTG
TTGGATGTGAGCTGAGTAAACGAATCCAACATGATCCAACAcgaaaaaaa
gaagtaaatgttggacaaaatgtttgatggcgatcaaactcCCATCCAAC
ACTTTTTTCCTCCTtccaacataattttttcttcctttccgATTTTTACA
TTCgagtaaacgattccaacattccgTCCAACAGAGAGAAAATGGCATGT
TggatggaatttggaatcgtttacctcgGCCTNAAATAGAAATAGAATAG
AAAAAGGCGTACAAAATATACATTACAGAATTTAGTAAGAAAATATCATa
tgaaaaatatccaaaaatccaaaattataACATCTCAAAGTATCAAAAAA
TGTTTGTCATAAAAAACAATATTTCCTGTAGTGCCATTAAAAAATATccc
taaatttgaaaatttgacgtgACTATTTCGACTTAGGCTAGGCTCTTCAA
GTTTTACAATTAGTTACACCATACAGATTGATTTGTCAAATGTAACTTTC
CTTTCAAGTTAATACTGCAGAAAAACAAGTCGATGGTCGGGTAGTTCGAA
GTAAAAAGCTCAgttgaatgaaaaataatggTTTTGCTGGTCTAGTGACA
CTTTGAGCCTCTTACATCGTGTTATTCAATACAATAATAtgtgcaaaatt
taaaaaaaaaataaaaaaaattgtctttaaatgctttcttttcatttggc
tGATGTTTGACTGGTTTCatattttcgtgattttaaggctttaatgatct
taaaatattcttatgtCGTGCTTTCTTTACTCACTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027279-exon-sc0000613-1491911889:50264..50566 | TCONS_00027279-exon-sc0000613-1491911889:50264..50566 | Clytia hemisphaerica | exon |
| TCONS_00027279-exon-sc0000613-1510915933:50264..50566 | TCONS_00027279-exon-sc0000613-1510915933:50264..50566 | Clytia hemisphaerica | exon |
| TCONS_00027279-exon-sc0000613-1575043694:50264..50566 | TCONS_00027279-exon-sc0000613-1575043694:50264..50566 | Clytia hemisphaerica | exon |
| TCONS_00027279-exon-sc0000613-1491911889:51385..51900 | TCONS_00027279-exon-sc0000613-1491911889:51385..51900 | Clytia hemisphaerica | exon |
| TCONS_00027279-exon-sc0000613-1510915933:51385..51900 | TCONS_00027279-exon-sc0000613-1510915933:51385..51900 | Clytia hemisphaerica | exon |
| TCONS_00027279-exon-sc0000613-1575043694:51385..51900 | TCONS_00027279-exon-sc0000613-1575043694:51385..51900 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000613 | supercontig | sc0000613:50264..51900 + |
Blast
The following BLAST results are available for this feature:
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