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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027359 ID=TCONS_00027359|Name=TCONS_00027359|organism=Clytia hemisphaerica|type=transcript|length=2417bp
gaaaatttgaatttaaataacATTTCAGTCTATTTTGAACTATCATTGAA
aggatatttcaaaactattttttttcgaTCAGTAAGTCGGCCATCTGGGC
TACCTCTGTCCCCCGTTCTTTAAAAAGGAGTCATGAATAATTTAAATTCA
CTACTCTGATTGGTTTAAATCTATCAAAATGATCaaatctgattggctga
gaGAAGTTTTAACCTTTTTTGTGTCATGTTGAAGGGGAATGACAGAACTG
AGAAAAGACGGAGAGATgtgttttttacatttttgtccCCTGTACCTAAA
AAACAATGTAAAAAACAgaaacaaaacaatcaaaaatggtTTCCGCCTTG
TTTCGatagaataataaaaataaatcatcgattttatagaaaaaaatttc
agggtaaaaatttttgaagggaGGTTATTTTCTTCCATGAACAAAAACTA
TCGAATATTTTAAactcatttaaaaacaatttgaaataaaagcaCATGGA
ATTCAAAGAGGAAGATGgaaatttaaataaaatgaataatGCTGAATCTA
AGATTTtagttgaaaatttcatcaggACTTTCTACAGCTAATGTGTTATC
ATGATATGGACTTAATAGAATAATCTACTAAAACCACGAGACCGAAAAAG
AAGTTCAACATAGAGTAAACCAACGAAAAACAAGGAACAAAGAAAAGGGT
TAATCATCGAACGACCATATTGCGCTATCGAATataataaatgaaaacaa
tagattGTAAAAAAGGACAATAGCAAAGAAAATAATGGATGTgatggaaa
aataaatagacagagagaaaaaaaagacaGAGGAATGCAGATCAGAGTCA
AAAAAGCTGGACTAAATTAAAAGCCATCAGGAACAAGATTGTCATATAAG
AAGTTATCTTGTgaacaatattttacaaaaaacgGCTGGTCCGAAAGgaa
gatttttgttgttttcaagagaagaacaaagcaaaaaaatttgaccaTCT
TTATTATTGCCGAATATTGTTTTTAGAAACCTGTGTTCCTACATTTATTT
TGTTCGAAGAGGATTATCAGGCTGTCACCGTATTATCATAATAATATTTT
GTGAGAGGGATAGGATCGGAAGGTCATATGTTCACATACGCTAATATAAA
CAATCTCCAAACATATGTCATCTTCTCTACATTATGGGGGAAGCTTCCCT
TTACCACCACTATCCGCATTCAGCTCGTTACATAGTAGCAGCCAGGCTGG
ACTAACGAGTGGGGCACCTTACTCAGGTTACGGACAAAGCAACGGAGGGG
AGGAAACCAAGGAGCAGTATCAACACAATGGAGTATCATCCGTACCGATG
CCTTCTCTATCAATACCGCCAGCTACACCACCCTACCCTTACAACCTTTC
TTCATCCTATCCACCACCTTTCATGATGGGGGAACAGAATGGTAGAAGCT
TCCACCGGAACGAACCAAACTTCTATCCATCTCGTAATATAGAGCCAGCG
CAACCATGGGATAGGCAGTCGCACGGGATGCCTCCAGAGGGGCCTGGACA
ATACCCGAGAATGATGTATCCCCCACCCTGGCAAAATAACTTTAATGGTC
CTACCAACAATCGACCGCGCCAACCGAAACCTAAACGTCCACGTATGAGC
CTCCAGAAACGTCTTCTAGTTAACGCCCGTGAACGGGACCGTATGAGAGT
CTTAAACAAAGCGTTTGAGTCCTTACGTGATGCGTTACCGTGTTACATAG
CTGACGGACATATGGCAAAAATAACTACACTAAGACTTGCCATCAATTAT
ATAAAAGCGTTAACTGACTTGCTTAATGAACAAAAAGTTATCGGTAATAA
AACGGGCGTTATGAGAAAAGAACGAAGTCacgaagaaatattttcaacca
ttttgaaagactcaaaagtggaTGGCGTTAAACCTGTTCTGAAAAACTTG
GATGAAAGATTGGCGATTCCAACTCTTACGCATCAACACCACCCTGAAAT
GTTTGATAATTTCTCGCAAGTTATGCAGTATTATTGATAGTCAGTTTCAa
gtcatttaattttttaaagatcttttttatttatttcgtAATTTCATCTT
AAATACCAGAGACTTTTTGAATCGATTATCATTTTGAATCGGCTTTTGGT
AAAATTGGAGAATTTTCGTTTTTCAGTAGAACATTTTTGAGTGATTATTC
ACTAAAAAGTAGTTTTAAAGGTATATCTTAGCCAGTAGCTTTCTgatttc
atttcatagaaatatttataatataaaTAGTTCAGTTTGAGAAATGATAT
TGCTTGGCAGCCATATTTCCATTTGAACCTGTAAATATCTGAATTAattt
taaaactatttaaagAAGTTGTGTAATTATTGTTGAATTGttttttatga
tgatttttATTTCAAGG Run BLAST on NCBI protein sequence of Hlh-5 >TCONS_00027359-protein ID=TCONS_00027359-protein|Name=Hlh-5|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
MSSSLHYGGSFPLPPLSAFSSLHSSSQAGLTSGAPYSGYGQSNGGEETKE
QYQHNGVSSVPMPSLSIPPATPPYPYNLSSSYPPPFMMGEQNGRSFHRNE
PNFYPSRNIEPAQPWDRQSHGMPPEGPGQYPRMMYPPPWQNNFNGPTNNR
PRQPKPKRPRMSLQKRLLVNARERDRMRVLNKAFESLRDALPCYIADGHM
AKITTLRLAINYIKALTDLLNEQKVIGNKTGVMRKERSHEEIFSTILKDS
KVDGVKPVLKNLDERLAIPTLTHQHHPEMFDNFSQVMQYY Run BLAST on NCBI transcript from alignment at sc0000616:82291..84707 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027359 ID=TCONS_00027359|Name=TCONS_00027359|organism=Clytia hemisphaerica|type=transcript|length=2417bp|location=Sequence derived from alignment at sc0000616:82291..84707 (Clytia hemisphaerica)
CCTTGAAATaaaaatcatcataaaaaaCAATTCAACAATAATTACACAAC
TTctttaaatagttttaaaatTAATTCAGATATTTACAGGTTCAAATGGA
AATATGGCTGCCAAGCAATATCATTTCTCAAACTGAACTAtttatattat
aaatatttctatgaaatgaaatcAGAAAGCTACTGGCTAAGATATACCTT
TAAAACTACTTTTTAGTGAATAATCACTCAAAAATGTTCTACTGAAAAAC
GAAAATTCTCCAATTTTACCAAAAGCCGATTCAAAATGATAATCGATTCA
AAAAGTCTCTGGTATTTAAGATGAAATTacgaaataaataaaaaagatct
ttaaaaaattaaatgactTGAAACTGACTATCAATAATACTGCATAACTT
GCGAGAAATTATCAAACATTTCAGGGTGGTGTTGATGCGTAAGAGTTGGA
ATCGCCAATCTTTCATCCAAGTTTTTCAGAACAGGTTTAACGCCAtccac
ttttgagtctttcaaaatggttgaaaatatttcttcgtGACTTCGTTCTT
TTCTCATAACGCCCGTTTTATTACCGATAACTTTTTGTTCATTAAGCAAG
TCAGTTAACGCTTTTATATAATTGATGGCAAGTCTTAGTGTAGTTATTTT
TGCCATATGTCCGTCAGCTATGTAACACGGTAACGCATCACGTAAGGACT
CAAACGCTTTGTTTAAGACTCTCATACGGTCCCGTTCACGGGCGTTAACT
AGAAGACGTTTCTGGAGGCTCATACGTGGACGTTTAGGTTTCGGTTGGCG
CGGTCGATTGTTGGTAGGACCATTAAAGTTATTTTGCCAGGGTGGGGGAT
ACATCATTCTCGGGTATTGTCCAGGCCCCTCTGGAGGCATCCCGTGCGAC
TGCCTATCCCATGGTTGCGCTGGCTCTATATTACGAGATGGATAGAAGTT
TGGTTCGTTCCGGTGGAAGCTTCTACCATTCTGTTCCCCCATCATGAAAG
GTGGTGGATAGGATGAAGAAAGGTTGTAAGGGTAGGGTGGTGTAGCTGGC
GGTATTGATAGAGAAGGCATCGGTACGGATGATACTCCATTGTGTTGATA
CTGCTCCTTGGTTTCCTCCCCTCCGTTGCTTTGTCCGTAACCTGAGTAAG
GTGCCCCACTCGTTAGTCCAGCCTGGCTGCTACTATGTAACGAGCTGAAT
GCGGATAGTGGTGGTAAAGGGAAGCTTCCCCCATAATGTAGAGAAGATGA
CATATGTTTGGAGATTGTTTATATTAGCGTATGTGAACATATGACCTTCC
GATCCTATCCCTCTCACAAAATATTATTATGATAATACGGTGACAGCCTG
ATAATCCTCTTCGAACAAAATAAATGTAGGAACACAGGTTTCTAAAAACA
ATATTCGGCAATAATAAAGAtggtcaaatttttttgctttgttcttctct
tgaaaacaacaaaaatcttcCTTTCGGACCAGCcgttttttgtaaaatat
tgttcACAAGATAACTTCTTATATGACAATCTTGTTCCTGATGGCTTTTA
ATTTAGTCCAGCTTTTTTGACTCTGATCTGCATTCCTCtgtctttttttt
ctctctgtctatttatttttccatcACATCCATTATTTTCTTTGCTATTG
TCCTTTTTTACaatctattgttttcatttattatATTCGATAGCGCAATA
TGGTCGTTCGATGATTAACCCTTTTCTTTGTTCCTTGTTTTTCGTTGGTT
TACTCTATGTTGAACTTCTTTTTCGGTCTCGTGGTTTTAGTAGATTATTC
TATTAAGTCCATATCATGATAACACATTAGCTGTAGAAAGTcctgatgaa
attttcaactaAAATCTTAGATTCAGCattattcattttatttaaatttc
CATCTTCCTCTTTGAATTCCATGtgcttttatttcaaattgtttttaaat
gagtTTAAAATATTCGATAGTTTTTGTTCATGGAAGAAAATAACCtccct
tcaaaaatttttaccctgaaatttttttctataaaatcgatgatttattt
ttattattctatCGAAACAAGGCGGAAaccatttttgattgttttgtttc
TGTTTTTTACATTGTTTTTTAGGTACAGGggacaaaaatgtaaaaaacac
ATCTCTCCGTCTTTTCTCAGTTCTGTCATTCCCCTTCAACATGACACAAA
AAAGGTTAAAACTTCtctcagccaatcagatttGATCATTTTGATAGATT
TAAACCAATCAGAGTAGTGAATTTAAATTATTCATGACTCCTTTTTAAAG
AACGGGGGACAGAGGTAGCCCAGATGGCCGACTTACTGAtcgaaaaaaaa
tagttttgaaatatcctTTCAATGATAGTTCAAAATAGACTGAAATgtta
tttaaattcaaattttc Coding sequence (CDS) from alignment at sc0000616:82291..84707 >TCONS_00027359 ID=TCONS_00027359|Name=TCONS_00027359|organism=Clytia hemisphaerica|type=CDS|length=873bp|location=Sequence derived from alignment at sc0000616:82291..84707 (Clytia hemisphaerica)
TCAATAATACTGCATAACTTGCGAGAAATTATCAAACATTTCAGGGTGGT
GTTGATGCGTAAGAGTTGGAATCGCCAATCTTTCATCCAAGTTTTTCAGA
ACAGGTTTAACGCCAtccacttttgagtctttcaaaatggttgaaaatat
ttcttcgtGACTTCGTTCTTTTCTCATAACGCCCGTTTTATTACCGATAA
CTTTTTGTTCATTAAGCAAGTCAGTTAACGCTTTTATATAATTGATGGCA
AGTCTTAGTGTAGTTATTTTTGCCATATGTCCGTCAGCTATGTAACACGG
TAACGCATCACGTAAGGACTCAAACGCTTTGTTTAAGACTCTCATACGGT
CCCGTTCACGGGCGTTAACTAGAAGACGTTTCTGGAGGCTCATACGTGGA
CGTTTAGGTTTCGGTTGGCGCGGTCGATTGTTGGTAGGACCATTAAAGTT
ATTTTGCCAGGGTGGGGGATACATCATTCTCGGGTATTGTCCAGGCCCCT
CTGGAGGCATCCCGTGCGACTGCCTATCCCATGGTTGCGCTGGCTCTATA
TTACGAGATGGATAGAAGTTTGGTTCGTTCCGGTGGAAGCTTCTACCATT
CTGTTCCCCCATCATGAAAGGTGGTGGATAGGATGAAGAAAGGTTGTAAG
GGTAGGGTGGTGTAGCTGGCGGTATTGATAGAGAAGGCATCGGTACGGAT
GATACTCCATTGTGTTGATACTGCTCCTTGGTTTCCTCCCCTCCGTTGCT
TTGTCCGTAACCTGAGTAAGGTGCCCCACTCGTTAGTCCAGCCTGGCTGC
TACTATGTAACGAGCTGAATGCGGATAGTGGTGGTAAAGGGAAGCTTCCC
CCATAATGTAGAGAAGATGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027359-exon-sc0000616-1491911889:82291..84707 | TCONS_00027359-exon-sc0000616-1491911889:82291..84707 | Clytia hemisphaerica | exon |
| TCONS_00027359-exon-sc0000616-1510915933:82291..84707 | TCONS_00027359-exon-sc0000616-1510915933:82291..84707 | Clytia hemisphaerica | exon |
| TCONS_00027359-exon-sc0000616-1575043694:82291..84707 | TCONS_00027359-exon-sc0000616-1575043694:82291..84707 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000616 | supercontig | sc0000616:82291..84707 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR011598 | bHLH_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
The following BLAST results are available for this feature:
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