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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027363 ID=TCONS_00027363|Name=TCONS_00027363|organism=Clytia hemisphaerica|type=transcript|length=1880bp
GAACAGACTATAATTTTACGCGCTCTTCATCGCAGATTTATTTTCTACTT
CAAATGACTAAACGCTACGCGTGTACTCAGGTGTGTACTTCAATCAGCCA
ATCAGATTACGCTATTTCCTCTATTTCTAAGAAGCACGGCATATAGAATA
GAAATATCTTTATGAACCCATTGATGTTAGACagtaatttgattttcaag
agtaatttgatttcttatttttttcccatTCATAGTTGGNGATTTGATTT
TCAAgagatttattattttttcccaTTCATAGTTGGGTTGTCGTTGTGAG
AGAAACGTGTTTGTAGTCTGCGTGTAtctcagtttgttttgaaaaggatT
TTATAATATCTTCGAACTCTACAACAACCATGAAGCTGATTGCAGCCCTT
CTAATCTTTGTATCAGTGATCGCTATACGAGGTGACGATGGAGATTGTGC
TAAGAAATCCAATGCTCTTGACGAACTTCTTGGTGATTACAGTGTTACAT
GTTATACGTCCGTTGCTGGCAAGAGATTGCGTGTCCATATGGAAATCAAG
ACATGTAGAGAAAAACCATCTGTTACATTCGGATTTCCTGACCTCGATTG
GGAAGAGACTTTTGAAGATTCTGCTGATATAGGAATACCTGGTGCTTCAA
CACCTTTGGGAGGTGTTTACTTGAGAATCAAAATTGAGAGCTTACCAGAC
CAAAAAGAAACAAATCTTAAaATTCAACTTTATGTGAAAGTCCTGGGCAT
TAGTTCACATGCTGTGACGCTCTCTAATGATAAGATTGTCAATAGTGATT
GTAATGCTATTGTTTATTGGTGGAATTCACAAACAAGTGCAATTCAAGGA
TCAGTCGGAGGTGGCGGCGGTCTTCTGTTCCTCATTCTCCTTGGTTGTTG
TTGTAAATGTTGTTGTTGCAGCAAGAAGAACGACCGTGGAACCACATTCG
TTATGCAACCACCACCACCAGTCAGCGGCCAGCCACAAGTTATTGTTAAC
AACTCTATGTCGTCACAACAAAACATGATGTCGCCACCTGGTTACACTGC
AATGCCCAATGTGAACAAAAAAGATCCCTATGGTGTACCATACCACAAGT
TTTAACCATCTTTTTCACGAGACATTGTAATGGATACAtgatttatttta
aaagttttttcgtCCTTCAGTACTGTTTACTCACCTAAGATTCCACTTCC
CAAACTAAGACTCCAATGAGTTATTCTGAATgaataaaccttttcataaa
ttacgccaCGAACATCATTTGCCTTGTTTTGAAGTTATTAACATGGTGAT
TTACTcacagcggattttattacagctactttctattcataaaaaaatca
tttaatgtctcaagggatgtgatcaccatggaaattgtttgaatacgagg
caagtgatgttcgtgacgtaatttatgaaaaggtctattgaagtTGTTCT
GGGATTACTTGCTGAAAATAGTCGGAAAATAGTACAAAGTTGCATCTAGA
GGCACTGAAGAAAGCTTGTTCTAAAAATCTGGCTAACCTTCTTAAGTTCA
TTTCCAACTATCTGGAGTTGGTATTTTTTTCACAGGAGAGTGTAAAGTGG
TATCTCAGCTCAGGAAGTGGAAGTCTTAGGCGAGTCAACTGAATGTCACT
TTTCCCTTGGCAAAAAGCATTTAGAATGTTGCCATTCgatcgttgttgtt
gttgttgtctgtAATTAGTCGCCTTTCTATTTGGCTACGATTgaccattt
tttttttcaaaattattggtAGTTTATCTCCAGCTATgagttttttcttc
tctttttcccGCGTTTGAGgcaacatttgaaagaaaaatacatGTTGACC
atttaaagtttaaaagaaaatttcttgcga Run BLAST on NCBI transcript from alignment at sc0000619:82189..88047+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027363 ID=TCONS_00027363|Name=TCONS_00027363|organism=Clytia hemisphaerica|type=transcript|length=5859bp|location=Sequence derived from alignment at sc0000619:82189..88047+ (Clytia hemisphaerica)
GAACAGACTATAATTTTACGCGCTCTTCATCGCAGATTTATTTTCTACTT
CAAATGACTAAACGCTACGCGTGTACTCAGGTGTGTACTTCAATCAGCCA
ATCAGATTACGCTATTTCCTCTATTTCTAAGAAGCACGGCATATAGAATA
GAAATATCTTTATGAACCCATTGATGTTAGACagtaatttgattttcaag
agtaatttgatttcttatttttttcccatTCATAGTTGGNGATTTGATTT
TCAAgagatttattattttttcccaTTCATAGTTGGGTTGTCGTTGTGAG
AGAAACGTGTTTGTAGTCTGCGTGTAtctcagtttgttttgaaaaggatT
TTATAATATCTTCGAACTCTACAACAACCATGAAGCTGATTGCAGCCCTT
CTAATCTTTGTATCAGGTATGAATTTTATACCCTTACTTATATTTGATGA
AATCTAGTTTTCTAGCTTTTTAAGAAACCAGATTTGTTATAAGTTGTACC
AAACATGTATAAACTGCTAAACTGATCGATTGTTTAAGCATTATAGgtta
aagacatttttttagCAATGAAAGGCACCGAAAGGCACcaggtaaaaaaa
aaacgtctaCAATTTCTCAAGAAAGAAGTACTTTAAGAGGAGGTAGGAAT
TCTCAAAACCTTAGAGCGGTGAACCAACTCACTCAGACTCACTATGTGCT
AGTgttaagattttaaagattgCATTTTTTCTCTTACTTCAGTGATCGCT
ATACGAGGTGACGATGGAGATTGTGCTAAGAAATCCAATGCTCTTGACGA
ACTTCTTGGTGATTACAGTGTTACATGTTATACGTCCGTTGCTGGCAAGA
GATTGCGTGTCCATATGGAAATCAAGACATGTAGAGAAAAACCATCTGTT
ACATTCGGATTTCCTGACCTCGATTGGGAAGAGACTTTTGAAGATTCTGC
TGATATAGGAATACCTGGTGCTTCAACACCTTTGGGAGGTGTTTACTTGA
GAATCAAAATTGAGAGCTTACCAGACCAAAAAGAAACAAATCTTAAagta
agaaatcttttttttcttttctgatcTTTCAAGTTATAACAGAGTTTTAG
tatcttgtttattttgttttgattttaatttctaTGGAtgtacaaattac
agaccagacatGTCTgtgatttagatatttttttacGTTTTCCACAATTA
TTTGTTAAAAAGTGATGAAGAAGTTCTACTTCAACTTTCTCACTTAATTT
ATCCACTCTAACCGATTAttccaaaaacaatttttatataaCTTCTTGTC
TATTTTACAGATTCAACTTTATGTGAAAGTCCTGGGCATTAGTTCACATG
CTGTGACGCTCTCTAATGATAAGATTGTCAATAGTGATTGTAATGGTatg
ttatttcttttttctctctttgaTATATagcaagaaaaataatttagtga
atagttttttttcatttatactgagacggaaaaatcgtctgagagtgaga
cgagtagtttgtaaaatATGATCTGTGGAAgagatcctatttattgaaac
aagaatggaaagtacactcctccataatgctcattttctaaacTGCTCGT
CTTAgacaaattaatcgtctcagtataaatagaactaattactagtcata
gctttcactaaatgcccccacataaagatcatgtcacttataaagcttta
atgcattaaagattaaaacattaataaaaaataatcaggaataattgatt
gatttaattattgcttgattggttggttgattgattgattgattgattga
tagaggcatttgcttgaaaaaaaaattatattttattaacaAAATTCTTG
AAGATTTAATAagatttaaggaaaagctggaaaagcttctcaaaaatata
tttcaaaaattatggtatcattagcttacaggttttcacatctcttgttt
gtttttttctcctagtttctttcttataacaatgtatatcgtgattatta
ttcactaaatataccttttctgataatgccgcagacatctcagattgtag
gcaaaatatatagtggtgaataaatcaacaaggtaaccaatcagaaatag
cttgtttttttcattggatgctatatttcaacaattctctattgcaactt
tgcctaataaacaatagtcaagaggatactgcgtatgaaatttatcaaaa
agttttgcgccatcttaaatagggtgaaatagaaaccaatcctagttaag
gcccggcctccacttgggtacgctgtgattgcacttattcttaaacaaaa
tcttctattttattggtcaaaagaaaaataaaggaatgccatttaattgt
ggtccattcagacgtacagtcgagaaaagttgaaatgcgcctaaattttt
tttcaagcatcaagtacatagtactttttcatgatgcaatctcttctcca
agctgaaaggattgaagccattaagatgatcgcagcgcagacaatgaaga
gacgtgccttcaggaagctagactttttgagtttacagctatatatactt
tcactttatggtgtttctgtatgactgtctgtgtacctagtctaaccacc
gttaaatgccttcgggaaggtccatcctaacttggaaagccagaattgga
gctatttcaccaaaccactNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNgctatttcaccaaaccactggagcgtaaattatttaggctatcacaac
tgcatgaaaaagttgaatgtgcgcatgtaaagttaaacgaatgtaaacaa
gatttttgcaggtttttgaaatagatttaccacactgaaaaaacagtgaa
aaaatgaggtaaatctattttgaagaccaaaaaaaaattgacattcaaca
ttcattcaaccacttttggattcaactttacatatgtatacattcaactt
ttttgtactttgccggtatcttgttttactaagttaagttACGACCAttt
gatggtatttaaagctcgagaagctctataaacaataagtatatgtaatc
acatgataacgagtgcaattcgaatataatttgcacgagtgatttttttg
ttattaattttccgagtccgaaaggacgaggaaaattcgaaacaaaaaaa
tcacgagtgcaattttcgaattgtacgagttaNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNtccaatatctatgcgtgaaactatgagtgcctcctc
gtcgctacgctcctgcgggggcaataattacacccctgtctctgaaAATG
CAAAATCAGTCCGTGGCCATATTCTATCATCAATTTTATGTCTCGTTTGT
TCCGCTAGTTCTGCGGGGTAGTTTTTGGAAGACTTCAACTAAAGCcatta
gagaaaaaaattgagaaattgagaaaaaaagatttgcaaAAATTGCTTGA
TTTCTATATGTTTGTGTGTTTatatacaaaaataatgaatcAGATGATCG
ATAGGAGGATTAGTTTTTATGAATGCTCCCAGGATAATTTGGCATACCGT
GGCATGACGTCAAACTGTGTGAAAATGAGTACTATGGTTGCTATGGATCC
GTTGTAGTCTAGATCAATCTTACGGGATTAATTCCAAAATTATATTGGAG
TTTTTAATCTGTAGATTTTACTAAAATATATGATTTTAAAAATGAGGTGC
TCAAACAGTAGTGCAGCAAAGTTTGatattgtctgtacacagacccaata
tctactagtctgaatcgcagacctttACAAAAACCCAGGTAgtatataag
gagcacgaatccgttagtggatgccagcagcctaagtATCtgcggctaat
ttcaaaattcattgccgtagagtattgtactacgaagcgataaacctGAG
GTTGTCTGGTGCAGAGTAAGTTCGATTTgaaatgatcatttttgccCAGC
ATGTTTCTGGCTCCTTccaatttctaataaaaaaggtTATTAAATAACTA
ATTAGAACTATTTCTTGGTTTTATTCTTCCAATAGCTATTGTTTATTGGT
GGAATTCACAAACAAGTGCAATTCAAGGATCAGTCGGAGGTGGCGGCGGT
CTTCTGTTCCTCATTCTCCTTGGTTGTTGTTGTAAATGTTGTTGTTGCAG
CAAGAAGAACGACCGTGGAACCACATTCGTTATGCAACCACCACCACCAG
TCAGCGGCCAGCCACAAGTTATTGTTAACAACTCTATGTCGTCACAACAA
AACATGATGTCGCCACCTGGTTACACTGCAATGCCCAATGTGAACAAAAA
AGATCCCTATGGTGTACCATACCACAAGTTTTAACCATCTTTTTCACGAG
ACATTGTAATGGATACAtgatttattttaaaagttttttcgtCCTTCAGT
ACTGTTTACTCACCTAAGATTCCACTTCCCAAACTAAGACTCCAATGAGT
TATTCTGAATgaataaaccttttcataaattacgccaCGAACATCATTTG
CCTTGTTTTGAAGTTATTAACATGGTGATTTACTcacagcggattttatt
acagctactttctattcataaaaaaatcatttaatgtctcaagggatgtg
atcaccatggaaattgtttgaatacgaggcaagtgatgttcgtgacgtaa
tttatgaaaaggtctattgaagtTGTTCTGGGATTACTTGCTGAAAATAG
TCGGAAAATAGTACAAAGTTGCATCTAGAGGCACTGAAGAAAGCTTGTTC
TAAAAATCTGGCTAACCTTCTTAAGTTCATTTCCAACTATCTGGAGTTGG
TATTTTTTTCACAGGAGAGTGTAAAGTGGTATCTCAGCTCAGGAAGTGGA
AGTCTTAGGCGAGTCAACTGAATGTCACTTTTCCCTTGGCAAAAAGCATT
TAGAATGTTGCCATTCgatcgttgttgttgttgttgtctgtAATTAGTCG
CCTTTCTATTTGGCTACGATTgaccattttttttttcaaaattattggtA
GTTTATCTCCAGCTATgagttttttcttctctttttcccGCGTTTGAGgc
aacatttgaaagaaaaatacatGTTGACCatttaaagtttaaaagaaaat
ttcttgcga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027363-exon-sc0000619-1491911889:82189..82604 | TCONS_00027363-exon-sc0000619-1491911889:82189..82604 | Clytia hemisphaerica | exon |
| TCONS_00027363-exon-sc0000619-1510915933:82189..82604 | TCONS_00027363-exon-sc0000619-1510915933:82189..82604 | Clytia hemisphaerica | exon |
| TCONS_00027363-exon-sc0000619-1575043694:82189..82604 | TCONS_00027363-exon-sc0000619-1575043694:82189..82604 | Clytia hemisphaerica | exon |
| TCONS_00027363-exon-sc0000619-1491911889:82931..83235 | TCONS_00027363-exon-sc0000619-1491911889:82931..83235 | Clytia hemisphaerica | exon |
| TCONS_00027363-exon-sc0000619-1510915933:82931..83235 | TCONS_00027363-exon-sc0000619-1510915933:82931..83235 | Clytia hemisphaerica | exon |
| TCONS_00027363-exon-sc0000619-1575043694:82931..83235 | TCONS_00027363-exon-sc0000619-1575043694:82931..83235 | Clytia hemisphaerica | exon |
| TCONS_00027363-exon-sc0000619-1491911889:83499..83583 | TCONS_00027363-exon-sc0000619-1491911889:83499..83583 | Clytia hemisphaerica | exon |
| TCONS_00027363-exon-sc0000619-1510915933:83499..83583 | TCONS_00027363-exon-sc0000619-1510915933:83499..83583 | Clytia hemisphaerica | exon |
| TCONS_00027363-exon-sc0000619-1575043694:83499..83583 | TCONS_00027363-exon-sc0000619-1575043694:83499..83583 | Clytia hemisphaerica | exon |
| TCONS_00027363-exon-sc0000619-1491911889:86974..88047 | TCONS_00027363-exon-sc0000619-1491911889:86974..88047 | Clytia hemisphaerica | exon |
| TCONS_00027363-exon-sc0000619-1510915933:86974..88047 | TCONS_00027363-exon-sc0000619-1510915933:86974..88047 | Clytia hemisphaerica | exon |
| TCONS_00027363-exon-sc0000619-1575043694:86974..88047 | TCONS_00027363-exon-sc0000619-1575043694:86974..88047 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000619 | supercontig | sc0000619:82189..88047 + |
Blast
The following BLAST results are available for this feature:
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