TCONS_00027366 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027366
Unique NameTCONS_00027366
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length762

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027366 ID=TCONS_00027366|Name=TCONS_00027366|organism=Clytia hemisphaerica|type=transcript|length=762bp
gatttttatttataaaataataCTAAAATATCTTCTACTAAAGTTCTAGA
TATGAGAAAAAAACTAACTCATCGCTGAAGTATATGATTATTACCCCCTT
TTCAAATTATGGTTTGCAGCTATAACTTTTAGTGGTATCTGGTCTGTGGA
TTTGATTCGGCACGTTCTTCTACACTCCAATTCTTTTGACCGATCACTGT
CTTTTACACGGGGCTGCTCTCAACGTTAGCCAAAATGACCAAAAAGAGAA
GAGCTGGAGGACGTAACAAGAATGGACGTGGTCATGTAAGATATGTTAGA
TGCACAAACTGTGCTAGATGTGTTCCAAAGGACAAAGCCATTAAGAAGTT
TGTCATCAGAAATATTGTAGAGGCTGCTGCTGTCAGAGATTTGGCTGAAG
CTAGTGTTTATGATGGTTATGCATTACCCAAACTTTACGCCAAACTTGCT
TATTGTGTGAGCTGTGCTATTCACTCCAAAGTTGTTAGAAATAGATCTCG
CGAAGACAGAAAAGTCAGGACACCACCACCACGTATGGGAATGAGACGTG
ATGACAACAAGCCACGTCAACCTGGACAAGGGGCCCCACAAAGAACGTAA
TGCATTTTGGACAGGAAATatagtgaaaaaaataaatcatttttgtgtct
ttttttctaaccTGGTGCTTATCTTTCATGTGTGACTTGGATAATTGTTC
TAGTCACTGGCAAATAACTATTTAATTCTTTGGTCATTTTAAGTAAAATG
ATAATTAAACTg
Run BLAST on NCBI

protein sequence of TCONS_00027366-protein

>TCONS_00027366-protein ID=TCONS_00027366-protein|Name=TCONS_00027366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MTKKRRAGGRNKNGRGHVRYVRCTNCARCVPKDKAIKKFVIRNIVEAAAV
RDLAEASVYDGYALPKLYAKLAYCVSCAIHSKVVRNRSREDRKVRTPPPR
MGMRRDDNKPRQPGQGAPQRT
Run BLAST on NCBI

transcript from alignment at sc0000619:156058..163329+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027366 ID=TCONS_00027366|Name=TCONS_00027366|organism=Clytia hemisphaerica|type=transcript|length=7272bp|location=Sequence derived from alignment at sc0000619:156058..163329+ (Clytia hemisphaerica)
gatttttatttataaaataataCTAAAATATCTTCTACTAAAGTTCTAGA
TATGAGAAAAAAACTAACTCATCGCTGAAGTATATGATTATTACCCCCTT
TTCAAATTATGGTTTGCAGCTATAACTTTTAGTGGTATCTGGTCTGTGGA
TTTGATTCGGCACGTTCTTCTACACTCCAATTCTTTTGACCGATCACTGT
CTTTTACACGGGGCTGCTCTCAACGTTAGCCAAAATGGTAAGCTCTATGA
TCCCTAACTCACATAAAGTTTATTTTACTACTTCCCACTTTCGATAATTT
CATCAACTTTGAACAGCTcaatttaaaagttaaaaatttttacTATTACG
AGATTGTTTTGAAGCGAAAGTCTGAAAGTGGCACTTATTGTGATATTTTA
GACCAAAAAGAGAAGAGCTGGAGGACGTAACAAGAATGGACGTGGTCATG
TAAGATATGTTAGATGCACAAACTGTGCTAGATGTGTTCCAAAGGACAAA
GCCATTAAGAAGTTTGTCATCAGAAATATTGTAGAGGCTGCTGCTGTCAG
AGATTTGGCTGAAGCTAGTGTTTATGATGGTATGTTTTAATGTTATCTGT
AGTTGTATACATGATTTTACAAACACATCTAGCCAGATGGTACCAATTAA
ACATTTGATTGTGAgcaaagtaatcaataatgatcgatgATAATCGACAG
TAGTCAGTGAccacctatcgattctatcctATCGGTGATCGTATACTCAC
TCAACTCCAAATTATGGTATTTTCCTCAACCATTTTCAATTCGTTCGATC
ATTTTGATTACTTTTCAATTACTTTTGATCATATTGGATAACTTCCATTG
TATCAAATATGTTGTTCCCTGAAACAGCGCGTTGGAATCTGAaaccaatt
ttattttaattaataAGAATGCGCGATATAAACTATGTGAGGCAACCCAG
TGCCAACATACACAAAATGGCAGAATGGCCGTGGTAATTACTAAAGTTCA
TTCTTATGGCTGGTGCTTCCTGtgcttctttttgtgctttttaatttttc
ttaaagatatctttAAATAGGCCATGGCCAGCCCCCTCAAAATGtttgga
cttttttcaaaatgctgGTGAACAAGCTTTGCCCAttgattttagtcaat
ttttgtcATCAAAAGTTGTGGGCATTTTTGTGGCAGaaaaagtgctataa
ttttgcagattgtggggaaattccctgtttccaatcaatttttgactaCA
AGATGCGCATAACTTTGATCTAGAAAATTTAGGAAtttgatataaatttt
ttttgcccagtttgaagagctctatcatgtgatacagtccagacgtccgc
gctcgataggatcgatcatcggaacagcTCGTTGACGGATCGGTATGTGA
TAgatggattacttaacaatccggataggagatcgatagaagATTCGGCC
ATTAAAAAGTCaggagtatcgatccttcgttgatccattatcaagctagt
atttcaatcgagtatatctaTTCGTCAtcaatcgttaatcgattcgtcat
caatcgttaatcgattcgtcatcaatcgttaatcgattcgtcatcaatcg
ttaatcgatttgttatagatcgtaaatcgagtatgagtcgatagggtcga
taagatcgatgatagatcgataaataatcgataactaatcataagcttaa
aattcttgagtatcgatcctctatcgatttTCAGGGCgtacaattttgcc
taaaaacgtcaaaaattttaaattacgCTAAAACTGctggttttcaagct
tggtaacattcaaattctgaatcagcaccctcaaattgagtaaAGCTAAG
GCAACACTAAGCAATTTTTTCAGGCGTATGCAAtgccactggggtatagg
gacgccttatgccctatgacccccggcctcattgagccaaaatgacaaaa
agaaagaaaaaaagaactgGGGTTTCTTTCCAATTTATAGaagcaaattt
tgaaatttaacaaatggGCACAGGGACCCTCGTATCCCTTGGCCTGATGG
CCTCATGGGTCCATGTGGAAACAAACAAAGATCAAAGGTTTccttcactt
tttttataagaaccaagtCTTGAGATAAtcacattttttgttttttctta
aataaatttGGGCTAgttaaattgatttcaaattatctCCACAATACCAA
GACAGTGGGGAAGGGTAGATAGCTCACTTGTACACCCTCATTgtcaaaag
gaaaatttgaactttcattAAATTTCAGTTTGATATATTCCCTTATAATG
GACATGTATGTATGACTTTGAGTGAGGGAACTGTGTTGGCTACCTGTTTC
TGGTTTTTAAGTGccgttttttggacctaccgggaggtcctttaatttga
ccgttgtccgttcgtctgttacaagcttttctcaggattggctcattagt
ttttttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNttttctcgggatcggctcattatttttttttcattt
tttgcacaatgatacaaaatagcaatgcctaaaaagtgacggagcccgat
tttgaaaaaaaatttggggggcaaatttgtgccaaaaactacctaaaaat
aaggtgttttggacttggtgcaaaattgcctcattagtttttcctgattt
ttgtcagaaagatagagtgcaaggtaccttaaaatgtggctgaaataatt
tttctcggaaaattttttttcgtcggaaaattttcaaaaaaagacgacca
agttacacaatgataaaagaaaataaatcattattgtattacataaaact
tattgtgtttgctcaataccaatagtaaaatgtagaacacctacttttat
ctgattttgatcaacaggtaggtccattcagcatgttgcttgtttatatA
AAAACTATGCAATTCATGTTTGAATTTCTGGAAAGCTTACCCATTAagtg
tcaatatattttttatttgaaagtaattgctTCGTGGAATAAGATACAGT
GAAATCTTTCATggacatttttgaaatttttgtcaaaaatcagTTTCCTA
TTTTTACCCAACGCAAACAAGCATGTGAGTGTCTTGTTGTGGAATATCAT
TGAAACGCATTAAAACTCCTTCATTTGGAATCCTATCGACTATGGATCAA
CTAGTTGAACTTGTTTGATTAAAATTGTCTGGCCAAAAATATTTAAGTGA
AATTTCAAGTATTAATATATCATTTTGTTATTGTGTTTAGGTTATGCATT
ACCCAAACTTTACGCCAAACTTGCTTATTGTGTGAGCTGTGCTATTCACT
CCAAAGTTGTTAGAAATAGATCTCGCGAAGACAGAAAAGTCAGGACACCA
CCACCACGTATGGGAATGAGAGTGAGTATTTTCATCtgtctttttcttca
aatgatCAATAATCATGGAAAATTGAAGTTGTAACCCCCTGTAAAAAGTT
GTACCTCttatgtattaaaaaaaaatccagtCTGGGAATGATCAAGTATA
TTTCATTTGTGTTATCTATACTTCATTAAAAGATGCAAAACGAAACACTG
ACCTCCACCGTGACCTCTTTCTTGCATAGAGAATCATGACTAAATCATCA
GGGGACAACTATTTTCAaccttgatttttgatttttgactttaTCCTTCA
TTTAAAGTTGTGTTGTTTTTCTCCATCATACAGCATCATATTtacatttt
aagatttttttgaacCTACTGTGGCATCTTTCCCTTATcaagtatattta
tttttctgttatCTATACTTCATTTAAAGATGCAAAACCAAACACTGACC
TCCACCGTGACCTCTTCCTTGAATAGAGAATCATGACTAAATCAGCAGGG
gacaatttattttcaatgttcCAATAATTTTGGCTTTCTTCTCCCAGACA
ACTAAAATTGCTTTACTCAGGGCTGATTGAACCTACTGTAGCATCTTTCC
CTTATCAAGTATATTTCATTTGTGTTATCTATACTTCATTTAAAGATGCA
AAACCAAACACTGACCTCCACCGTGACCTCTTCCTTGGATAGAGAATCAT
GACTGAATCAGCAGGGgacaatttattttcaatgtttcAATAATTTTGGC
TTTCTTCTCCCAGACAAGCAAAAATGCTTTACTCAGGCCCCATTGAACCT
ACTGTAGCATCTTTCCCTTATCAAGTATATTTCATTTGTGTTATCTATAC
TTCATTAAAAGATGCAAAACCAAACACTGACCTCCACCGTGACCTCTTCC
TTGAATAGAGAATCATGACTAAATCAGCAGGGGACAACTTTATTTTCAAT
GTTCCAATAATTTTGGCTTTCTTCTCCCAGACaactaaaattgctttatt
cAGGGCCCATTGAACCTACTGTAGCATCTTTCCCTTATCAAGTATATTTT
GTTTGTTATCTATACTTCATTTAAAGATGCAAAACTAAACACTGACCTCC
ACCGTGACCTCTTCCTTGAATAGAGAATCATGACTAAATCAGCAGGGGAC
AACTTTATTTTCAATGTTCCAATAATTTTAGCTTTCTTCTCCCAGCCAAT
TAAAATTGCTTTACTCGGGGCCCATTGAACCTACTATGGCATCTTTCCCT
TATCAAGTATATTTCATTTGTGTTATCTATACTTCATTAAAAGATGCAAA
ACGAAACACTGACCTCCACCGTGACCTCTTCCTTGAATAGAGAATCATGA
CTAAATCAGCAGGGGACAACTTTATTTTCAATGTTCCAATAATTTTAGCT
TTCTTCTCCCAGCCAATTAAAATTGCTTTACTCGGGGCCCATTGAACCTA
CTATGGCATCTTTCCCTTATCAAGTATATTTCATTTGTGTTATCTATACT
TCATTAAAAGATGCAAAACGAAACACTGACCTCCACCGTGACCTCTTCCT
TGAATAGAGAATCATGACTAAATCAGCAGGGGACAACTTTATTTTCAATG
TTCCAATAATTTTAGCTTTCTTCTCCCAGCCAATTAAAATTGCTTTACTC
GGGGCCCATTGAACCTACTATGGCATCTTTCCCTTATCAAGTATATTTCA
TTTGTGTTATCTATACTTCATTAAAAGATGCAAAACGAAACACTGACCTC
CACCGTGACCTCTTCCTTGAATAGAGAATCATGACTAAATCAGCAGGGGA
CAACTTTATTTTCAATGTTCCAATAATTTTAGCTTTCTTCTCCCAGCCAA
TTAAAATTGCTTTACTCGGGGCCCATTGAACCTACTATGGCATCTTTCCC
TTATCAAGTATATTTCATTTGTGTTATCTATACTTCATTAAAAGATGCAA
AACGAAACACTGACCTCCACCGTGACCTCTTCCTTGAATAGAGAATCATG
ACTAAATCAGCAGGGGACAACTTTATTTTCAATGTTCCAATAATTTTAGC
TTTCTTCTCCCAGCCAATTAAAATTGCTTTACTCGGGGCCCATTGAACCT
ACTATGGCATCTTTCCCTTATCAAGTATATTTCATTTGTGTTATCTATAC
TTCATTAAAAGATGCAAAACGAAACACTGACCTCCACCGTGACCTCTTCC
TTGAATAGAGAATCATGACTAAATCAGCAGGGGACAACTTTATTTTCAAT
GTTCCAATAATTTTAGCTTTCTTCTCCCAGCCAATTAAAATTGCTTTACT
CGGGGCCCATTGAACCTACTATGGCATCTTTCCCTTATCAAGTATATTTC
ATTTGTGTTATCTATACTTCATTAAAAGATGCAAAACGAAACACTGACCT
CCACCGTGACCTCTTCCTTGAATAGAGAATCATGACTAAATCAGCAGGGG
ACAACTTTATTTTCAATGttccaatattttttgctttcttCTCCCAGACA
ATTAAAATTGCTTTACTCAGGGCCCATTGAACCTACTATGGCATCTTTCC
CTTATCAAGTATATTTTGTTTGTTATCTATACTTCATTTAAAGATGCAAA
ACTAAACACTGACCTCCACCGTGGACCTCTTCCTTGAATAGAGAATCATG
ACTAAATCAGCAGGGGACAACTTTATTTTCAATGttccaatattttttgc
tttcttCTCCCAGACAACTAAAATTGCTTTACTCGGGGCCCATTGAACCT
ACTGTAGCATCTTTCCCTTATCAAGTATATTTCATTTGTGTTATCTATAC
TTCATTAAAAGATGCAAAACGAAACACTGACCTCCACCGTGACCTCTTCC
TTGAATAGAGAATCATGACTAAATCAGCAGGGGACAACTTTATTTTCAAT
GttccaatattttttgctttcttCTCCCAGACAATTAAAATTGCTTTACT
CAGGGCCCATTGAACCTACTATGGCATCTTTCCCTTATCAAGTATATTTC
ATTTGTGTTATCTATACTTCATTAAAAGATGCAAAACGAAACACTGACCT
CCACCGTGACCTCTTCCTTGAATAGAGAATCGTGACTGAATCATCAGGGG
acagttttatttttactttacttAAAAGCCCCGTCTTCTTTCATGACAAG
AACAAGCAGTTAAATTATAGTTTCGTTTTTCTGAccaatttttattcttt
ttacaGCGTGATGACAACAAGCCACGTCAACCTGGACAAGGGGCCCCACA
AAGAACGTAATGCATTTTGGACAGGAAATatagtgaaaaaaataaatcat
ttttgtgtctttttttctaaccTGGTGCTTATCTTTCATGTGTGACTTGG
ATAATTGTTCTAGTCACTGGCAAATAACTATTTAATTCTTTGGTCATTTT
AAGTAAAATGATAATTAAACTg

Coding sequence (CDS) from alignment at sc0000619:156058..163329+

>TCONS_00027366 ID=TCONS_00027366|Name=TCONS_00027366|organism=Clytia hemisphaerica|type=CDS|length=1464bp|location=Sequence derived from alignment at sc0000619:156058..163329+ (Clytia hemisphaerica)
ATGACCAAAAAGAGAAGAGCTGGAGGACGTAACAAGAATGGACGTGGTCA
TGTAAGATATGTTAGATGCACAAACTGTGCTAGATGTGTTCCAAAGGACA
AAGCCATTAAGAAGTTTGTCATCAGAAATATTGTAGAGGCTGCTGCTGTC
AGAGATTTGGCTGAAGCTAGTGTTTATGATGGTTATGCATTACCCAAACT
TTACGCCAAACTTGCTTATTGTGTGAGCTGTGCTATTCACTCCAAAGTTG
TTAGAAATAGATCTCGCGAAGACAGAAAAGTCAGGACACCACCACCACGT
ATGGGAATGAGACGTGATGACAACAAGCCACGTCAACCTGGACAAGGGGC
CCCACAAAGAACGTAAATGACCAAAAAGAGAAGAGCTGGAGGACGTAACA
AGAATGGACGTGGTCATGTAAGATATGTTAGATGCACAAACTGTGCTAGA
TGTGTTCCAAAGGACAAAGCCATTAAGAAGTTTGTCATCAGAAATATTGT
AGAGGCTGCTGCTGTCAGAGATTTGGCTGAAGCTAGTGTTTATGATGGTT
ATGCATTACCCAAACTTTACGCCAAACTTGCTTATTGTGTGAGCTGTGCT
ATTCACTCCAAAGTTGTTAGAAATAGATCTCGCGAAGACAGAAAAGTCAG
GACACCACCACCACGTATGGGAATGAGACGTGATGACAACAAGCCACGTC
AACCTGGACAAGGGGCCCCACAAAGAACGTAAATGACCAAAAAGAGAAGA
GCTGGAGGACGTAACAAGAATGGACGTGGTCATGTAAGATATGTTAGATG
CACAAACTGTGCTAGATGTGTTCCAAAGGACAAAGCCATTAAGAAGTTTG
TCATCAGAAATATTGTAGAGGCTGCTGCTGTCAGAGATTTGGCTGAAGCT
AGTGTTTATGATGGTTATGCATTACCCAAACTTTACGCCAAACTTGCTTA
TTGTGTGAGCTGTGCTATTCACTCCAAAGTTGTTAGAAATAGATCTCGCG
AAGACAGAAAAGTCAGGACACCACCACCACGTATGGGAATGAGACGTGAT
GACAACAAGCCACGTCAACCTGGACAAGGGGCCCCACAAAGAACGTAAAT
GACCAAAAAGAGAAGAGCTGGAGGACGTAACAAGAATGGACGTGGTCATG
TAAGATATGTTAGATGCACAAACTGTGCTAGATGTGTTCCAAAGGACAAA
GCCATTAAGAAGTTTGTCATCAGAAATATTGTAGAGGCTGCTGCTGTCAG
AGATTTGGCTGAAGCTAGTGTTTATGATGGTTATGCATTACCCAAACTTT
ACGCCAAACTTGCTTATTGTGTGAGCTGTGCTATTCACTCCAAAGTTGTT
AGAAATAGATCTCGCGAAGACAGAAAAGTCAGGACACCACCACCACGTAT
GGGAATGAGACGTGATGACAACAAGCCACGTCAACCTGGACAAGGGGCCC
CACAAAGAACGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015399XLOC_015399Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027366-exon-sc0000619-1491911889:156058..156294TCONS_00027366-exon-sc0000619-1491911889:156058..156294Clytia hemisphaericaexon
TCONS_00027366-exon-sc0000619-1510915933:156058..156294TCONS_00027366-exon-sc0000619-1510915933:156058..156294Clytia hemisphaericaexon
TCONS_00027366-exon-sc0000619-1575043694:156058..156294TCONS_00027366-exon-sc0000619-1575043694:156058..156294Clytia hemisphaericaexon
TCONS_00027366-exon-sc0000619-1491911889:156459..156636TCONS_00027366-exon-sc0000619-1491911889:156459..156636Clytia hemisphaericaexon
TCONS_00027366-exon-sc0000619-1510915933:156459..156636TCONS_00027366-exon-sc0000619-1510915933:156459..156636Clytia hemisphaericaexon
TCONS_00027366-exon-sc0000619-1575043694:156459..156636TCONS_00027366-exon-sc0000619-1575043694:156459..156636Clytia hemisphaericaexon
TCONS_00027366-exon-sc0000619-1491911889:159798..159928TCONS_00027366-exon-sc0000619-1491911889:159798..159928Clytia hemisphaericaexon
TCONS_00027366-exon-sc0000619-1510915933:159798..159928TCONS_00027366-exon-sc0000619-1510915933:159798..159928Clytia hemisphaericaexon
TCONS_00027366-exon-sc0000619-1575043694:159798..159928TCONS_00027366-exon-sc0000619-1575043694:159798..159928Clytia hemisphaericaexon
TCONS_00027366-exon-sc0000619-1491911889:163114..163329TCONS_00027366-exon-sc0000619-1491911889:163114..163329Clytia hemisphaericaexon
TCONS_00027366-exon-sc0000619-1510915933:163114..163329TCONS_00027366-exon-sc0000619-1510915933:163114..163329Clytia hemisphaericaexon
TCONS_00027366-exon-sc0000619-1575043694:163114..163329TCONS_00027366-exon-sc0000619-1575043694:163114..163329Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027366-proteinTCONS_00027366-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000619supercontigsc0000619:156058..163329 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1892.64	1877.65	2213.04	2392.53	1161.83	940.657	1261.14	1339.5	2238.18	2049.26	2241.83	2747.81	3351.96	3043.17	3287.06	3318.75	3445.68	3629.5	1667.79	1881.24	3738.35	3699.45	2656.43	2557.19	1370.65	1560.71	3743.45	3696.18	2378.46	2362.99
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000892Ribosomal_S26e
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
[Close]
BLAST of TCONS_00027366 vs. Swiss-Prot (Human)
Match: RS26 (40S ribosomal protein S26 OS=Homo sapiens GN=RPS26 PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.003e-43
Identity = 72/85 (84.71%), Postives = 77/85 (90.59%), Query Frame = 1 
Query:  283 HVRYVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDLAEASVYDGYALPKLYAKLAYCVSCAIHSKVVRNRSREDRKVRTPPPRM 537
            HV+ +RCTNCARCVPKDKAIKKFVIRNIVEAAAVRD++EASV+D Y LPKLY KL YCVSCAIHSKVVRNRSRE RK RTPPPR 
Sbjct:   17 HVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRF 101
The following BLAST results are available for this feature:
BLAST of TCONS_00027366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS261.003e-4384.7140S ribosomal protein S26 OS=Homo sapiens GN=RPS26... [more]
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