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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027367 ID=TCONS_00027367|Name=TCONS_00027367|organism=Clytia hemisphaerica|type=transcript|length=2044bp
TGTGtaaataataaaagaaaagttAATAATTTCTTCACTCTCTAAATAAT
CGAAATTAGTTGATACATGCTAATAGTTTATTAtcttctaaaaaataaaa
tgtttgtcTTTATATGTAAATAAAAGTTCGTAAAAACTTTCTCCGTAAAa
tgtttcattaaaaaaataacgGGTGAAAGTATGGTTTCCTCGACGACTAA
CATCTCTCCTTTGTGTCAAAAGCGAAGGGCCAGTTTAATTTTGTCCACGT
ATAACTGCGGAATGAATTAATTTATAAACAGATTATCTTAAAACCCTATA
TATTAGTTTGTAGAATTATGCTTTCAAGCCATAAATATGTAACTATTGTC
AACGGAGTTCGTACGCGATCCCCGTGTTAGACATTCGTACATGGTAAATA
TGTTGCCAACAACATTCACTGAATATCCATAAAACGCttaatttgagcaa
aaaaaaaacaaaaagctaaGGAGATGAGATACGGGTTTATACGGAGGCAA
TGcgataaaaaaaaagttacttgtaaaaaaatgataTATTAAAAAATAAC
TTGTGAAAATAATAAGTCATAAACATACAAACTATAAAGACAGCTAATTA
GAAGCACTAAATCAATTCATTTTAAGATGCAGTCAATATCCACACTCTGA
AGTGGACCATCTTTGAGGATGTAAAAAGATTAATCGTTTTTACCGAAAAT
Ataatacagttgacactctctaactcgatcttcaaggaaaattgtatttt
catcgaataagggagcttatcgaataagggagcgtcgtttatgagagttt
atctttgacggtgactttcaatttcatcgaataagggagcctatcgaata
gtagagagtcgaattagagagcgtcaactgtaatttgGTAATACTGTAAC
ACGAAAAgttgttaaacttttttgtgattCCGCTGAAAGGCATCCATATT
AGTCACTGGAAGTTCAAAATCTAAATTGAAAATATATCCGACTGAAGGAC
ACAGTTAAGGAGTTAAGGAAGAACAAAATAAAGTCTAGCGGTGATTAGTA
GGTTTATGTCAAACGAAGGAAATTAAAAAGTTGGCCTTATTTTCTACTAA
TACACCGATGATGAGAAATATAAAACATAATTTATAAATATCTTCTAAAA
CGTATCCATGCGAATATACATCTCTACAAATTAATAAttatatttaaatt
ttattattcGTGACGATACGTCGTAACGAGATTCTATTCTTCTCGTTAAt
ttattctttacttttttgtcataaattaaTTGAGGATGATGATTTTTTCA
GCATCTGAGCTTTTACATTACATCGACGAAGAATTCGTTTGACGAGTTTC
CCATTGCCATTCGGAAACTTTGTCGACTTGCGCTCAAACTAGCAGGTAAA
GTATCTAAACGTCCTAATTCACGATGTTGTTCGGCAGGCGTTCGGGTGCC
ATCTTGTGGCGGTTGTGGGGAGCCGGCGGGTGGAGGTTGAGGCGTTTGAG
CGGGTGATTGAAGTTGAAGTTGCTGGAGTTGTTGTTGAATCTGGTGATGC
ATCTGTTGTTGTTGGTGCATTTGAACCTGAATGTGTTGCTGTTGTTCAGG
CGTTAAACCAACAGGCGCTGCTGAATATGCCACCCCGGGCGGCATGACCA
TCATGGGTGGAATACTGTGATGTGATGAAATTGAACGATTATCAGGTGCT
ATGATTTCACTTCGTAAACTAATAGTGTCCGAGTGAAAGGACGAAAGCGA
AGAGCGGTCATCCAGCATTGGTTTTCGACTTCTGGAACCTTTCGAACTGT
GCGAGCGATCAGACGAGCCGCTGCTACGAACGGTGGCCTGGTCGTCGtgt
attttttgtgatttctgtGAGCCTGAGCCACCGCTTCCACCACTCAAGTG
ACTAGGAGCTATGCTACCTGCGACGTATGGATATTGAGCGTACATTCCTG
GTTGAACGACTTGTTGGTATGTGGGTGGTGCACCGGCCATCATCACCCCT
CCCGGTATCATAGCCATTCCATATGGTTGTTGTATGTAACCTcc Run BLAST on NCBI transcript from alignment at sc0000619:45049..47160- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027367 ID=TCONS_00027367|Name=TCONS_00027367|organism=Clytia hemisphaerica|type=transcript|length=2112bp|location=Sequence derived from alignment at sc0000619:45049..47160- (Clytia hemisphaerica)
TGTGTAAATAATAAAAGAAAAGTTAATAATTTCTTCACTCTCTAAATAAT
CGAAATTAGTTGATACATGCTAATAGTTTATTATCTTCTAAAAAATAAAA
TGTTTGTCTTTATATGTAAATAAAAGTTCGTAAAAACTTTCTCCGTAAAA
TGTTTCATTAAAAAAATAACGGGTGAAAGTATGGTTTCCTCGACGACTAA
CATCTCTCCTTTGTGTCAAAAGCGAAGGGCCAGTTTAATTTTGTCCACGT
ATAACTGCGGAATGAATTAATTTATAAACAGATTATCTTAAAACCCTATA
TATTAGTTTGTAGAATTATGCTTTCAAGCCATAAATATGTAACTATTGTC
AACGGAGTTCGTACGCGATCCCCGTGTTAGACATTCGTACATGGTAAATA
TGTTGCCAACAACATTCACTGAATATCTAAAAACGCTTAATTTGAGCANC
ATTCGTACATGGTAAATATGTTGCCAACAACATTCACTGAATATCCATAA
AACGCTTAATTTGAGCAAAAAAAAAACAAAAAGCTAAGGAGATGAGATAC
GGGTTTATACGGAGGCAATGCGATAAAAAAAAAGTTACTTGTAAAAAAAT
GATATATTAAAAAATAACTTGTGAAAATAATAAGTCATAAACATACAAAC
TATAAAGACAGCTAATTAGAAGCACTAAATCAATTCATTTTAAGATGCAG
TCAATATCCACACTCTGAAGTGGACCATCTTTGAGGATGTAAAAAGATTA
ATCGTTTTTACCGAAAATATAATACAGTTGACACTCTCTAACTCGATCTT
CAAGGAAAATTGTATTTTCATCGAATAAGGGAGCTTATCGAATAAGGGAG
CGTCGTTTATGAGAGTTTATCTTTGACGGTGACTTTCAATTTCATCGAAT
AAGGGAGCCTATCGAATAGTAGAGAGTCGAATTAGAGAGCGTCAACTGTA
ATTTGGTAATACTGTAACACGAAAAGTTGTTAAACTTTTTTGTGATTCCG
CTGAAAGGCATCCATATTAGTCACTGGAAGTTCAAAATCTAAATTGAAAA
TATATCCGACTGAAGGACACAGTTAAGGAGTTAAGGAAGAACAAAATAAA
GTCTAGCGGTGATTAGTAGGTTTATGTCAAACGAAGGAAATTAAAAAGTT
GGCCTTATTTTCTACTAATACACCGATGATGAGAAATATAAAACATAATT
TATAAATATCTTCTAAAACGTATCCATGCGAATATACATCTCTACAAATT
AATAATTATATTTAAATTTTATTATTCGTGACGATACGTCGTAACGAGAT
TCTATTCTTCTCGTTAATTTATTCTTTACTTTTTTGTCATAAATTAATTG
AGGATGATGATTTTTTCAGCATCTGAGCTTTTACATTACATCGACGAAGA
ATTCGTTTGACGAGTTTCCCATTGCCATTCGGAAACTTTGTCGACTTGCG
CTCAAACTAGCAGGTAAAGTATCTAAACGTCCTAATTCACGATGTTGTTC
GGCAGGCGTTCGGGTGCCATCTTGTGGCGGTTGTGGGGAGCCGGCGGGTG
GAGGTTGAGGCGTTTGAGCGGGTGATTGAAGTTGAAGTTGCTGGAGTTGT
TGTTGAATCTGGTGATGCATCTGTTGTTGTTGGTGCATTTGAACCTGAAT
GTGTTGCTGTTGTTCAGGCGTTAAACCAACAGGCGCTGCTGAATATGCCA
CCCCGGGCGGCATGACCATCATGGGTGGAATACTGTGATGTGATGAAATT
GAACGATTATCAGGTGCTATGATTTCACTTCGTAAACTAATAGTGTCCGA
GTGAAAGGACGAAAGCGAAGAGCGGTCATCCAGCATTGGTTTTCGACTTC
TGGAACCTTTCGAACTGTGCGAGCGATCAGACGAGCCGCTGCTACGAACG
GTGGCCTGGTCGTCGTGTATTTTTTGTGATTTCTGTGAGCCTGAGCCACC
GCTTCCACCACTCAAGTGACTAGGAGCTATGCTACCTGCGACGTATGGAT
ATTGAGCGTACATTCCTGGTTGAACGACTTGTTGGTATGTGGGTGGTGCA
CCGGCCATCATCACCCCTCCCGGTATCATAGCCATTCCATATGGTTGTTG
TATGTAACCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027367-exon-sc0000619-1575043694:46771..47160 | TCONS_00027367-exon-sc0000619-1575043694:46771..47160 | Clytia hemisphaerica | exon |
| TCONS_00027367-exon-sc0000619-1575043694:45049..46702 | TCONS_00027367-exon-sc0000619-1575043694:45049..46702 | Clytia hemisphaerica | exon |
| TCONS_00027367-exon-sc0000619-1510915933:46771..47160 | TCONS_00027367-exon-sc0000619-1510915933:46771..47160 | Clytia hemisphaerica | exon |
| TCONS_00027367-exon-sc0000619-1510915933:45049..46702 | TCONS_00027367-exon-sc0000619-1510915933:45049..46702 | Clytia hemisphaerica | exon |
| TCONS_00027367-exon-sc0000619-1491911889:46771..47160 | TCONS_00027367-exon-sc0000619-1491911889:46771..47160 | Clytia hemisphaerica | exon |
| TCONS_00027367-exon-sc0000619-1491911889:45049..46702 | TCONS_00027367-exon-sc0000619-1491911889:45049..46702 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000619 | supercontig | sc0000619:45049..47160 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024580 | Dishevelled_C-dom |
Blast
The following BLAST results are available for this feature:
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