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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027416 ID=TCONS_00027416|Name=TCONS_00027416|organism=Clytia hemisphaerica|type=transcript|length=438bp
ATGTAGTGCTCTTCCAACTACTCATGATCCGTATCACCGTATCAATCTAC
ACAAAGTACACAACCCAAACAAAATACACAAGCCACACGATGACCCAGAC
TGTCCATCATCACTTTGCCACCACAAAGACTCTGGAATTTTCGCCTTGAA
AGAACACAGTAACATTTTCGTTCAATGCTCTGACGGAAAAGCTATTTGCC
AGAAATGCCCCCATGGATTGGTGTTTAGTGATTCCTTGAAAACTTGTGTT
AGACCTTCAGACAAGAAACTAacaacaacaactactacaaCCACCACAAC
AACTACAAAAAAGCCCCATGTTCATTACAACCCATACAAAACACACAAGC
CCCACAAGGTTCACAAGCCACGTACCACTAAAGCTCCTTACAAACCACAT
GCTTCTAATCCAGATTGTCCATCATCACTTTGCCACCA Run BLAST on NCBI transcript from alignment at sc0000626:109290..111376+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027416 ID=TCONS_00027416|Name=TCONS_00027416|organism=Clytia hemisphaerica|type=transcript|length=2087bp|location=Sequence derived from alignment at sc0000626:109290..111376+ (Clytia hemisphaerica)
ATGTAGTGCTCTTCCAACTACTCATGATCCGTATCACCGTATCAATCTAC
ACAAAGTACACAACCCAAACAAAATACACAAGCCACACGATGACCCAGAC
TGTAAGTACAAAGAAGCAACTTATCTAGCGATCTTATCTAGTCCCTTGAG
GGGATAATAAGTTTGCGAGGTGGCAGCTCAAagctcaaaaatccaaaatt
ctcaaacttcaatcaaatttttatttttatgggCATTTACGACAGAAATT
TTGACGTGGCGATTGTTGAGGATgtcaattttttatctttcctAATCAAT
TGCAAATGGAGAGAATTTTGAGGACAGGACCCTTTATTGCTAGCACATAC
CCAACACCCATTTTTCCTAAAGTAGCTCCCGGGTATTTAGCCTTTCTGGT
ATTCAAAAGCAATCTAGTGCCGCCCAAGGAAAATGACGCGAGAGAAGTAT
TTATGTTTTTGAAACGTAGTAGAAAATTTGTACTTTCATCTTTttaataa
tattattttttttatcttttgccTTAGTAGCCTCCCCCCACGCCCGGGAC
TTTAAGTGACAAGTGGGATAAGATTCCGAATGGTATGACCTGAATATATG
TATAACACTTCTGTCTCGatttaaaaatcatgaactgCCGATATTTATCT
CTCAGTTCTATTTTCAGGTCCATCATCACTTTGCCACCACAAAGACTCTG
GAATTTTCGCCTTGAAAGAACACAGTAACATTTTCGTTCAATGCTCTGAC
GGAAAAGCTATTTGCCAGAAATGCCCCCATGGATTGGTGTTTAGTGATTC
CTTGAAAACTTGTGTTAGACCTTCAGACAAGAAACTAacaacaacaacta
ctacaaCCACCACAACAACTACAAAAAAGCCCCATGTTCATTACAACCCA
TACAAAACACACAAGCCCCACAAGGTTCACAAGCCACGTACCACTAAAGC
TCCTTACAAACCACATGCTTCTAATCCAGATTGTAAGAAAACTTTCAAGA
TTTAAAATCTTCTTTATACACGCTCTCCTTTTAAGGGTCTTAATACACAG
CAAAACAAACAGTTCAAGTTGAGTCATAGTAAAGAATCATTTTCTAAATC
TATGATAAACTTCTGTAAATTAGCGATGGCGTAGATCTCTAAGGCGTTAT
CCATACAAAGCGGGGGCTCCTTGTTCGAATCCCCACTCCTTCCAATGCTC
CCTTCAGTTGGTTGCTGGTGTATAACTAAGCCAGCTAGTTACGGATCCCG
TAGGAATAATCAAACGTACTACGTCACTGAGCCATCCACGTAAAAGTTAA
ACTATTCCATCAAAATACTTGACTTAAAACCCTATTTCCTTGGATATATT
GCTTGAATTTAATTCTATTTTCAGGTCCATCATCACTTTGCCGCCACAAA
GACTCTGGAATTTTCGCCTTGAAAGAACACAGTAACATTTTCGTTCAATG
CTCTAACGGAAAAGCTATTTGCCAAAAATGCCCCCATGGATTGATGTTTA
GTGATTCCTTGAAAACTTGTGTTAGACCTTCAGACAAgaaaccaacaaca
acaactactacaaAAGCCCCTCATGACCCATATAAAGGAATCGAACCTCA
CAAACCCCACAAAACACACAAGCCACATACCACAAAAGCTCCACACAAAC
CACATGCTTCTAATCCAGATTGTAAGAAAACCTTGAAGATTTAAAATCTT
CTTTATGCCCGCTCTCCTTTTAAGGGTCTTAATATACAGCAAATCAAACA
GTTCAAGTTGAGTCATAATAAAGAATCCTTTTCTAAATCTATGGCAATCT
CCTGTAAATGAGCGATAGCGCAGATCTCTAATGCGTTATCCATACAAAGT
GGGGGCTCCTTGTCCGAATCCCCACTCCTTTCAATACTCCCTTCAGTTGG
TTGCCGGTGTATAACTGAGCCGGCTAGTCGTGGGTCCCGTAAGAGCAATC
AAACGTCCTATGTCACTGAGCCATCTacgtaaaaaaaataaactattCCA
TCAAAATACTTGACTTAAAACCCTATTTCCTTGGATATATTGCTTGAGTT
TAATTCTATTTTCAGGTCCATCATCACTTTGCCACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027416-exon-sc0000626-1491911889:109290..109390 | TCONS_00027416-exon-sc0000626-1491911889:109290..109390 | Clytia hemisphaerica | exon |
| TCONS_00027416-exon-sc0000626-1510915933:109290..109390 | TCONS_00027416-exon-sc0000626-1510915933:109290..109390 | Clytia hemisphaerica | exon |
| TCONS_00027416-exon-sc0000626-1575043694:109290..109390 | TCONS_00027416-exon-sc0000626-1575043694:109290..109390 | Clytia hemisphaerica | exon |
| TCONS_00027416-exon-sc0000626-1491911889:109957..110271 | TCONS_00027416-exon-sc0000626-1491911889:109957..110271 | Clytia hemisphaerica | exon |
| TCONS_00027416-exon-sc0000626-1510915933:109957..110271 | TCONS_00027416-exon-sc0000626-1510915933:109957..110271 | Clytia hemisphaerica | exon |
| TCONS_00027416-exon-sc0000626-1575043694:109957..110271 | TCONS_00027416-exon-sc0000626-1575043694:109957..110271 | Clytia hemisphaerica | exon |
| TCONS_00027416-exon-sc0000626-1491911889:111355..111376 | TCONS_00027416-exon-sc0000626-1491911889:111355..111376 | Clytia hemisphaerica | exon |
| TCONS_00027416-exon-sc0000626-1510915933:111355..111376 | TCONS_00027416-exon-sc0000626-1510915933:111355..111376 | Clytia hemisphaerica | exon |
| TCONS_00027416-exon-sc0000626-1575043694:111355..111376 | TCONS_00027416-exon-sc0000626-1575043694:111355..111376 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000626 | supercontig | sc0000626:109290..111376 + |
Blast
The following BLAST results are available for this feature:
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