TCONS_00027436 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027436
Unique NameTCONS_00027436
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1991

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027436 ID=TCONS_00027436|Name=TCONS_00027436|organism=Clytia hemisphaerica|type=transcript|length=1991bp
GCACTTTTATGTATTGGATGTGATATTCCTGCATGTCGCAAGCTTTGTGG
TATTTTAGGTCATGCTGCAGTCAAAGGATgctcaaaatgtgaaaaagaat
TTCCCGGTCGAAATTGTGGTGGTTTTGATAGAGATTTATGGAGAAGTAGA
ACAAATGAAGGACATCGGAGGCAGATGGAGGAAATCAAGAGAGCAGAAAC
GATAGGTGAAAAACAAAGACTCGAATCCTTGTATGGTACAAGATACTCAG
TCCTCACTGAACTCCCTTATGTGGACCTAATCAAGATGTCAGTAGTTGAT
CCGATGCATAACTTATTCTTAGGAACTTCTAAACTCATGATcaagatttg
gaaagaaaatggTTACCTGGATCATCATACGTTCCCAGTTCTTCAATCAC
GTGTAGATTCAGCTGTTGTGTCATCAGACGTCGGAAAACTTCCAACAAAA
TTGGAAAGTGGTTTTGATGGATTTACAGCCGATGAATTGAAGAATTGTAC
ACTTATCTACTCCATATATGCACTAAAAGGTATAATCCCTGAAGCTGATT
TAGAATGCTGGAGATTGTTCGTAATTGCATGCACCTATCTTTGTGCAAGA
GTAATAACACTCGAAGATATTGAACTGGCAGACACGTTccttctaaggtt
ttgtagaagaTTCCAGCGGTTGTACACATCTGATCGAGTGACGCCAAACA
TCCACCTTCACGGACACTTAAAAGAATGTTTGCAAGAGTTTGGTCCAGTT
TATTCGTTTTGGCTGTTTTCATTTGAAAGGTATAACGGTCTGTTGGGTGA
TTTGCCAAACAACAAGAAAAACATCGAATGTCAGATAATGAAGCGCTTTC
TTAGAGACCATCAGgTAATGAACTTCCATGACCAAAATCAAGTCGACAAT
GACTTTCACGAGTTAAAGCGTTTGTCTTGTGACTTGATGAATCGCAACAC
GAATCGTGGAACCCTCAATGATCAGTTGTCGTCTGACTACATTCCACATA
TGATGCACAGATCtcgtaattttgattttcaaaatcaaaagtgTTGGATG
GAACTTGATTACTTCCGGTTCTCGAGAAAACTTCAACCCTACACTCTTAA
TGAAGAAGAGTTTCGTATGCTAAAAATGACATACTCCAGTCTATATCCTA
CCGATTACCATAACCTTTTGGTTCCTCAAACAAGTTGGAAAACCACAGAA
TTGGTCTATGGCGAAAATTTGCTCGGATCAGTAAAATCCAGAAGCCATAA
ATCTAGCTACGTCTCTGCGTTTTGGGCATCTTCAGATGGATCAATTCAAG
CTCCTGGTGAAATGTATCTTAAACCAGTTCCTGGTCAAATAGTTTACTTC
ATCAAGCATAATGTTTTCTTTGGTGACGAGCACTATCCCCacgtattcgc
taaaattagttgGTTTCTTGAAAGTGATAAACGTGATATCTTTGGCAAAC
CAGTGGAAGTTTGGGACAATGTGCTCACAAAGCCTAAAGGGGCGTCTTCA
TTTATGCCAGTGCAGCGAACATTTGCTAAATTTGTAcattttaaattcga
aaagaaCTGCCAAAAATTAATGGCAGTCGTTCCAAGAGCATATTGCTTGC
gtttataaatttatttaaacTCCTCTAACAACTGGTATAAAACACTTTAG
GAGTGTGTCTTTGATATAAATGTAATGTTAATCAATTGCTTTTGCTTACA
TATCACCTTGGATATGTCCATAACCTTCTTAAACCTATAGCTCGTACGAA
TTAGATAGCCTCTAGATATTTTGTTATTCTATTCACTTTCTACTGTCAAA
AGATGGAGCAGGAGTATTATTATTTTTGGGTATTATGAATtatatttctt
tacattttgcatatgacacccctgtgtcacagacccggtggatcCCCACC
CCgttggaaaaataggccaaaaaatcgtccccagtggaaaaaatatctta
caatttcaaccccactgcgaaattactctatgattttatcc
Run BLAST on NCBI

transcript from alignment at sc0000627:29640..33141+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027436 ID=TCONS_00027436|Name=TCONS_00027436|organism=Clytia hemisphaerica|type=transcript|length=3502bp|location=Sequence derived from alignment at sc0000627:29640..33141+ (Clytia hemisphaerica)
GCACTTTTATGTATTGGATGTGATATTCCTGCATGTCGCAAGCTTTGTGG
ATTTTTAGGTAAGCTAAAAACACCTCATTATTCTATCCTAATAGAAGGGT
GAGGGAcactttttaacttttcgatatttttcagCCTACCATCAgtacat
tcttattccaactccCCTTCCTTAGTTTATAAACATATGATTATATTACA
AACTCTCCTTGCCAAattataaataatttgaaagtAAGGCCGTTGAGCGT
CCTGAAAATAGTAAGGGGccaattgaaaaaatgaaaaacgtaCATGTACA
CACCCTGTCTCAGTTCtgtttcgacgttcatctaacgttgtatggacgtt
atgaatattagataaacgttgaaacaacgttgtgtgccagctggggtcgT
GGGAGGAGGAAAAATATCCACTGGTGTTGAAATTTGAgcctcttttttca
tttatgtGAATTTTGGATTATGTTTTAAGGGATTatccatggcgttctaa
atctaaaatCTAAATGGCGTACTAAAGCATTTTTGTGACACTAGTTTATT
TGGGATTCTCTTGTTATAGTACACTTCTTTTACCTGTTTCTTGCCAAGTG
CAAATGTGCTTTTTCACCGGGGTAGCCTGGGTTCTATAATATTACACCGG
GGTGGACACagcttttatttcaatttctcaCTGGGGTTGAGATCACCATC
GCTTAGGGAAAGTTGCATTTTCACTGGGCTTaagtttaggctattttagt
atTCAAGAGGATTTTTTTTATAGGGGTGGATCTGACTAGGTCACTGATTT
AGGGGTGTATGTACGCTTTAGACTCATAAGTATTTGTATACAACTTGACT
ATTTTAGGTCATGCTGCAGTCAAAGGATgctcaaaatgtgaaaaagaatT
TCCCGGTCGAAATTGTGGTGGTTTTGATAGAGATTTATGGAGAAGTAGAA
CAAATGAAGGACATCGGAGGCAGATGGAGGAAATCAAGAGAGCAGAAACG
ATAGGTGAAAAACAAAGACTCGAATCCTTGTATGGTACAAGATACTCAGT
CCTCACTGAACTCCCTTATGTGGACCTAATCAAGATGTCAGTAGTTGATC
CGATGCATAACTTATTCTTAGGTATGTATTTGCTcgatttaaaattttgt
tattctcagTAAATCGGAAGGCAATATAATGATGCTTTGGAAGCTCGAAT
TTCgatagaaaaaagtttaactaatATTTCTGATTCATATTAAGTCAGAA
AGTTAATATTGGGTATTTTTATAAATGTttacttctttattttcactgtt
CACTGTATACGACAGTAGTTATTTGTTACCAGTGCAAAAATCTGGATTTC
TTTCATTAGGGCCAATCGTCGAAACCATACCTTTGCCACTCATGAGTAAA
GGTAATGTCGATGCACTAATTTCTTAAGACTTACGATTTTTTATCTAGGA
ACTTCTAAACTCATGATcaagatttggaaagaaaatggTTACCTGGATCA
TCATACGTTCCCAGTTCTTCAATCACGTGTAGATTCAGCTGTTGTGTCAT
CAGACGTCGGAAAACTTCCAACAAAATTGGAAAGTGGTTTTGATGGATTT
ACAGCCGATGAATTGAAGAATTGTACACTTATCTACTCCATATATGCACT
AAAAGGTATAATCCCTGAAGCTGATTTAGAATGCTGGAGATTGTTCGTAA
TTGCATGCACCTATCTTTGTGCAAGAGTAATAACACTCGAAGATATTGAA
CTGGCAGACACGTTccttctaaggttttgtagaagaTTCCAGCGGTTGTA
CACATCTGATCGAGTGACGCCAAACATCCACCTTCACGGACACTTAAAAG
AATGTTTGCAAGAGTTTGGTCCAGTTTATTCGTTTTGGCTGTTTTCATTT
GAAAGGTATAACGGTCTGTTGGGTGATTTGCCAAACAACAAGAAAAACAT
CGAATGTCAGATAATGAAGCGCTTTCTTAGAGACCATCAGGTAAATTATa
cgatttttttattagaacacccaAGATTCATTCGAGGCTAGATATTCTTA
TGGATTTCCTGGATGTTCGTAAATGCTTTTCTGAACTATTTAACCTCACA
AAATCGAGTTTTAAGAACACAACTTTGAATGGAGTTTTGTGCTTGAAAAA
TTCCCTGATGAATAGTAGCGTAAATACTTGTGTGTCAATTCTTAGGCCAT
GGGTCACTCACAAGATTATTATACTTTACAAAGCTTATGTCAAAAATGTc
ttaatgttaatgttttcaATACATTTACAATTTTACCAGCAAGTTAATTA
TTTTTCTTCNcttaatgttaatgttttcaatacatttacaattttaccag
caggttaattatttttcttcatcaggTAATGAACTTCCATGACCAAAATC
AAGTCGACAATGACTTTCACGAGTTAAAGCGTTTGTCTTGTGACTTGATG
AATCGCAACACGAATCGTGGAACCCTCAATGATCAGTTGTCGTCTGACTA
CATTCCACATATGATGCACAGATCtcgtaattttgattttcaaaatcaaa
agtgTTGGATGGAACTTGATTACTTCCGGTTCTCGAGAAAACTTCAACCC
TACACTCTTAATGAAGAAGAGTTTCGTATGCTAAAAATGACATACTCCAG
TCTATATCCTACCGATTACCATAACCTTTTGGTTCCTCAAACAAGTTGGA
AAACCACAGAATTGGTCTATGGCGAAAATTTGCTCGGATCAGTAAAATCC
AGAAGCCATAAATCTAGCTACGTCTCTGCGTTTTGGGCATCTTCAGATGG
ATCAATTCAAGCTCCTGGTGAAATGTATCTTAAACCAGTTCCTGGTCAAA
TAGTTTACTTCATCAAGCATAATGTTTTCTTTGGTGACGAGCACTATCCC
CacgtattcgctaaaattagttgGTTTCTTGAAAGTGATAAACGTGATAT
CTTTGGCAAACCAGTGGAAGTTTGGGACAATGTGCTCACAAAGCCTAAAG
GGGCGTCTTCATTTATGCCAGTGCAGCGAACATTTGCTAAATTTGTAcat
tttaaattcgaaaagaaCTGCCAAAAATTAATGGCAGTCGTTCCAAGAGC
ATATTGCTTGCgtttataaatttatttaaacTCCTCTAACAACTGGTATA
AAACACTTTAGGAGTGTGTCTTTGATATAAATGTAATGTTAATCAATTGC
TTTTGCTTACATATCACCTTGGATATGTCCATAACCTTCTTAAACCTATA
GCTCGTACGAATTAGATAGCCTCTAGATATTTTGTTATTCTATTCACTTT
CTACTGTCAAAAGATGGAGCAGGAGTATTATTATTTTTGGGTATTATGAA
Ttatatttctttacattttgcatatgacacccctgtgtcacagacccggt
ggatcCCCACCCCgttggaaaaataggccaaaaaatcgtccccagtggaa
aaaatatcttacaatttcaaccccactgcgaaattactctatgattttat
cc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015452XLOC_015452Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027436-exon-sc0000627-1491911889:29640..29689TCONS_00027436-exon-sc0000627-1491911889:29640..29689Clytia hemisphaericaexon
TCONS_00027436-exon-sc0000627-1510915933:29640..29689TCONS_00027436-exon-sc0000627-1510915933:29640..29689Clytia hemisphaericaexon
TCONS_00027436-exon-sc0000627-1575043694:29640..29689TCONS_00027436-exon-sc0000627-1575043694:29640..29689Clytia hemisphaericaexon
TCONS_00027436-exon-sc0000627-1491911889:30489..30760TCONS_00027436-exon-sc0000627-1491911889:30489..30760Clytia hemisphaericaexon
TCONS_00027436-exon-sc0000627-1510915933:30489..30760TCONS_00027436-exon-sc0000627-1510915933:30489..30760Clytia hemisphaericaexon
TCONS_00027436-exon-sc0000627-1575043694:30489..30760TCONS_00027436-exon-sc0000627-1575043694:30489..30760Clytia hemisphaericaexon
TCONS_00027436-exon-sc0000627-1491911889:31088..31629TCONS_00027436-exon-sc0000627-1491911889:31088..31629Clytia hemisphaericaexon
TCONS_00027436-exon-sc0000627-1510915933:31088..31629TCONS_00027436-exon-sc0000627-1510915933:31088..31629Clytia hemisphaericaexon
TCONS_00027436-exon-sc0000627-1575043694:31088..31629TCONS_00027436-exon-sc0000627-1575043694:31088..31629Clytia hemisphaericaexon
TCONS_00027436-exon-sc0000627-1491911889:32015..33141TCONS_00027436-exon-sc0000627-1491911889:32015..33141Clytia hemisphaericaexon
TCONS_00027436-exon-sc0000627-1510915933:32015..33141TCONS_00027436-exon-sc0000627-1510915933:32015..33141Clytia hemisphaericaexon
TCONS_00027436-exon-sc0000627-1575043694:32015..33141TCONS_00027436-exon-sc0000627-1575043694:32015..33141Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000627supercontigsc0000627:29640..33141 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0437733	0.142315	0	0.0779135	0.0576474	1.01483	0.904155	0.587276	0.195487	0.239333	0.417668	0.245296	0.705891	0.102983	0.559595	0.148219	0.851898	0.398287	1.44853	0	0.477236	0.487089	2.86388e-08	0.30784	3.06845	1.07153	1.81117	1.36017	0.0401355	0.0440039
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027436 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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