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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027438 ID=TCONS_00027438|Name=TCONS_00027438|organism=Clytia hemisphaerica|type=transcript|length=560bp
TAGAACAACCACCAAAACGCCAAAAGCCATTAGCAGAATCAATAGCGGAT
AAAGAACGTAAAGATCATGAAAGTTTAATGAAAGATGTCAACGAGACGAT
GAACTACCTCTTGGCACAATTGGACTATTTTTCTTCGTCTGACGGTGAGC
AATCGATCGATTTTGAGGCGACCTTCATAAAAACAAGCCGTGCTCATTTT
GTTCATAAGGCCGAGAAGAATAATAAACCCATCTTCAGATATGTAGACAT
GAATACACTAAAATACTGGGCAGAGATGACTCGACTCATCGTCAAGTGGT
TTGACAGAGGAACAAAATTGTCATTTGCGCATTATACTACATTCGATGAC
AATTTTATAAGGCATGGTGGTTTGGCGAGGAGAGGGGCTGTTCCGGCTAT
TGATGCTTGGTTTTTGGTGTCTGGAAGGGTTCGGAACGGCTTTAATATCC
TGGGCTACTTGGACACATTCCCTTGGATTGAAAAGGAGTTAGAGTCGATC
CGTCGACACCTCGACATCATTGTaaagagaaaattgattttaaatctTAA
TAAAACCtgt Run BLAST on NCBI protein sequence of TCONS_00027438-protein >TCONS_00027438-protein ID=TCONS_00027438-protein|Name=TCONS_00027438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
EQPPKRQKPLAESIADKERKDHESLMKDVNETMNYLLAQLDYFSSSDGEQ
SIDFEATFIKTSRAHFVHKAEKNNKPIFRYVDMNTLKYWAEMTRLIVKWF
DRGTKLSFAHYTTFDDNFIRHGGLARRGAVPAIDAWFLVSGRVRNGFNIL
GYLDTFPWIEKELESIRRHLDIIVKRKLILNLNKTC Run BLAST on NCBI transcript from alignment at sc0000627:71580..72408+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027438 ID=TCONS_00027438|Name=TCONS_00027438|organism=Clytia hemisphaerica|type=transcript|length=829bp|location=Sequence derived from alignment at sc0000627:71580..72408+ (Clytia hemisphaerica)
TAGAACAACCACCAAAACGCCAAAAGCCATTAGCAGAATCAATAGCGGAT
AAAGAACGTAAAGGTAAATTTATACATGGTGTTACAATCGGATTTTAGGT
ACATGAAAAATGACaacaacaaaatatttgaaattgcaTTTTTAGATCAT
GAAAGTTTAATGAAAGATGTCAACGAGACGATGAACTACCTCTTGGCACA
ATTGGACTATTTTTCTTCGTCTGGTGAGTCAAATATTGTCAACATAAACA
ATGTAGTTATAAAAAAGAAACCAGGGTTCGCACATCGGTTTGTATGCTTA
GAAAACTGAATCAGAAAGGGAATTAAAAACAGGAAGGGAAGAAcctgttt
ttattaattatctTAATAATGACATAATATACatataaaaataacatttt
caacatTTAGACGGTGAGCAATCGATCGATTTTGAGGCGACCTTCATAAA
AACAAGCCGTGCTCATTTTGTTCATAAGGCCGAGAAGAATAATAAACCCA
TCTTCAGATATGTAGACATGAATACACTAAAATACTGGGCAGAGATGACT
CGACTCATCGTCAAGTGGTTTGACAGAGGAACAAAATTGTCATTTGCGCA
TTATACTACATTCGATGACAATTTTATAAGGCATGGTGGTTTGGCGAGGA
GAGGGGCTGTTCCGGCTATTGATGCTTGGTTTTTGGTGTCTGGAAGGGTT
CGGAACGGCTTTAATATCCTGGGCTACTTGGACACATTCCCTTGGATTGA
AAAGGAGTTAGAGTCGATCCGTCGACACCTCGACATCATTGTaaagagaa
aattgattttaaatctTAATAAAACCtgt Coding sequence (CDS) from alignment at sc0000627:71580..72408+ >TCONS_00027438 ID=TCONS_00027438|Name=TCONS_00027438|organism=Clytia hemisphaerica|type=CDS|length=1674bp|location=Sequence derived from alignment at sc0000627:71580..72408+ (Clytia hemisphaerica)
GAACAACCACCAAAACGCCAAAAGCCATTAGCAGAATCAATAGCGGATAA
AGAACGTAAAGATCATGAAAGTTTAATGAAAGATGTCAACGAGACGATGA
ACTACCTCTTGGCACAATTGGACTATTTTTCTTCGTCTGACGGTGAGCAA
TCGATCGATTTTGAGGCGACCTTCATAAAAACAAGCCGTGCTCATTTTGT
TCATAAGGCCGAGAAGAATAATAAACCCATCTTCAGATATGTAGACATGA
ATACACTAAAATACTGGGCAGAGATGACTCGACTCATCGTCAAGTGGTTT
GACAGAGGAACAAAATTGTCATTTGCGCATTATACTACATTCGATGACAA
TTTTATAAGGCATGGTGGTTTGGCGAGGAGAGGGGCTGTTCCGGCTATTG
ATGCTTGGTTTTTGGTGTCTGGAAGGGTTCGGAACGGCTTTAATATCCTG
GGCTACTTGGACACATTCCCTTGGATTGAAAAGGAGTTAGAGTCGATCCG
TCGACACCTCGACATCATTGTaaagagaaaattgattttaaatctTAATA
AAACCtgtGAACAACCACCAAAACGCCAAAAGCCATTAGCAGAATCAATA
GCGGATAAAGAACGTAAAGATCATGAAAGTTTAATGAAAGATGTCAACGA
GACGATGAACTACCTCTTGGCACAATTGGACTATTTTTCTTCGTCTGACG
GTGAGCAATCGATCGATTTTGAGGCGACCTTCATAAAAACAAGCCGTGCT
CATTTTGTTCATAAGGCCGAGAAGAATAATAAACCCATCTTCAGATATGT
AGACATGAATACACTAAAATACTGGGCAGAGATGACTCGACTCATCGTCA
AGTGGTTTGACAGAGGAACAAAATTGTCATTTGCGCATTATACTACATTC
GATGACAATTTTATAAGGCATGGTGGTTTGGCGAGGAGAGGGGCTGTTCC
GGCTATTGATGCTTGGTTTTTGGTGTCTGGAAGGGTTCGGAACGGCTTTA
ATATCCTGGGCTACTTGGACACATTCCCTTGGATTGAAAAGGAGTTAGAG
TCGATCCGTCGACACCTCGACATCATTGTaaagagaaaattgattttaaa
tctTAATAAAACCtgtGAACAACCACCAAAACGCCAAAAGCCATTAGCAG
AATCAATAGCGGATAAAGAACGTAAAGATCATGAAAGTTTAATGAAAGAT
GTCAACGAGACGATGAACTACCTCTTGGCACAATTGGACTATTTTTCTTC
GTCTGACGGTGAGCAATCGATCGATTTTGAGGCGACCTTCATAAAAACAA
GCCGTGCTCATTTTGTTCATAAGGCCGAGAAGAATAATAAACCCATCTTC
AGATATGTAGACATGAATACACTAAAATACTGGGCAGAGATGACTCGACT
CATCGTCAAGTGGTTTGACAGAGGAACAAAATTGTCATTTGCGCATTATA
CTACATTCGATGACAATTTTATAAGGCATGGTGGTTTGGCGAGGAGAGGG
GCTGTTCCGGCTATTGATGCTTGGTTTTTGGTGTCTGGAAGGGTTCGGAA
CGGCTTTAATATCCTGGGCTACTTGGACACATTCCCTTGGATTGAAAAGG
AGTTAGAGTCGATCCGTCGACACCTCGACATCATTGTaaagagaaaattg
attttaaatctTAATAAAACCtgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027438-exon-sc0000627-1491911889:71580..71642 | TCONS_00027438-exon-sc0000627-1491911889:71580..71642 | Clytia hemisphaerica | exon |
| TCONS_00027438-exon-sc0000627-1510915933:71580..71642 | TCONS_00027438-exon-sc0000627-1510915933:71580..71642 | Clytia hemisphaerica | exon |
| TCONS_00027438-exon-sc0000627-1575043694:71580..71642 | TCONS_00027438-exon-sc0000627-1575043694:71580..71642 | Clytia hemisphaerica | exon |
| TCONS_00027438-exon-sc0000627-1491911889:71725..71802 | TCONS_00027438-exon-sc0000627-1491911889:71725..71802 | Clytia hemisphaerica | exon |
| TCONS_00027438-exon-sc0000627-1510915933:71725..71802 | TCONS_00027438-exon-sc0000627-1510915933:71725..71802 | Clytia hemisphaerica | exon |
| TCONS_00027438-exon-sc0000627-1575043694:71725..71802 | TCONS_00027438-exon-sc0000627-1575043694:71725..71802 | Clytia hemisphaerica | exon |
| TCONS_00027438-exon-sc0000627-1491911889:71990..72408 | TCONS_00027438-exon-sc0000627-1491911889:71990..72408 | Clytia hemisphaerica | exon |
| TCONS_00027438-exon-sc0000627-1510915933:71990..72408 | TCONS_00027438-exon-sc0000627-1510915933:71990..72408 | Clytia hemisphaerica | exon |
| TCONS_00027438-exon-sc0000627-1575043694:71990..72408 | TCONS_00027438-exon-sc0000627-1575043694:71990..72408 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000627 | supercontig | sc0000627:71580..72408 + |
Blast
The following BLAST results are available for this feature:
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