TCONS_00027447 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027447
Unique NameTCONS_00027447
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027447 ID=TCONS_00027447|Name=TCONS_00027447|organism=Clytia hemisphaerica|type=transcript|length=256bp
TAATTATGACAAAAATCACAACAGAGAAAAATCGGGGCCACAACAAAAGA
GACGAGTACGACAAAACATAAAGACCAAAGTGATGAAAATATGTAAAGGA
ATTGAGAGAGGTGAAAGTGTGGAGGAAATCCTGAAGAAAGTTGCTGACTA
CGTCTCAACAATATTTaaaGTAGCTGTAGAGATAAAAATTGGTTCATTCC
ATCATAAAAGTGGTTGTGATGATGAGGTTGATAATTACATAAGTGGTGGT
AAAGGA
Run BLAST on NCBI

transcript from alignment at sc0000627:129448..130433-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027447 ID=TCONS_00027447|Name=TCONS_00027447|organism=Clytia hemisphaerica|type=transcript|length=986bp|location=Sequence derived from alignment at sc0000627:129448..130433- (Clytia hemisphaerica)
TAATTATGACAAAAATCACAACAGAGAAAAATCGGGGCCACAACAAAAGA
GACGAGTACGACAAAACATAAAGACCAAAGTGATGGTATGCATTGTGTGA
AGCTTACAATTATTATTTTAAAATTATTGTCTGTGTAAACTATTTAATTG
AATTATCTTGTAAAGACATATATATCATACTATGGAAGATATCACTAATT
TATTCTAGTTAATGTACTGTAAGTAAACTATATATTTTGTTTCCAAGTAT
TTTTCTAAGTAAATTTCTTCACTCATAGAAAATATGTAAAGGAATTGAGA
GAGGTGAAAGTGTGGAGGAAATCCTGAAGAAAGTTGCTGACTACGTCTCA
ACAATATTTAAAGTAATTTATTTTATTGTGTATGCTTTCAACAGAAAAGT
TAAAGAGCCAAAAATAAAAATGATTTGAACCAGTTAAAACAATTGCTGCA
CAGTTCTTCATGCAATCTCCAGGCAATAGATTATTTTATTATCGCATAAC
TACCAAAAAGTAAAGTTCTTTTGCCAAAAATTGAAAACAAGTTCAAATAT
GCTAAATGTGACATGTTTTGTGAAAATTGAACAAATAGTTTTTCCTTTAA
AATTATCTAGGTAGCTGTAGAGATAAAAATTGGTTCATTCCATCATAAAA
GTGGTTGTGATGATGAGGTATTTCTTTGTCTAAAAATTTTGTTATTTTAA
AGAAGTATGACCTTTTGATTTATGTGAATAAAACTACTGACTTCAAAATA
ATTTCTCAAANAGTTGTGATAATGAGGTAATTCTTTGTCTAAAACTTTTG
TTATTTTAAAGAAGTATGACCTTTTGATTTATGTGAATAAAACTACTGAC
TTCAAAATAATTTCTCAAAATTGATTAAAGGCTTTTTAAAAGTGTTTTAC
TGAAATTTTGATAATTTTTCCAACTATTTAGTTATTTTTTTTTCTTCAAA
GTAAAGGTTGATAATTACATAAGTGGTGGTAAAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015458XLOC_015458Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027447-exon-sc0000627-1575043694:130349..130433TCONS_00027447-exon-sc0000627-1575043694:130349..130433Clytia hemisphaericaexon
TCONS_00027447-exon-sc0000627-1575043694:130072..130155TCONS_00027447-exon-sc0000627-1575043694:130072..130155Clytia hemisphaericaexon
TCONS_00027447-exon-sc0000627-1575043694:129767..129823TCONS_00027447-exon-sc0000627-1575043694:129767..129823Clytia hemisphaericaexon
TCONS_00027447-exon-sc0000627-1575043694:129448..129477TCONS_00027447-exon-sc0000627-1575043694:129448..129477Clytia hemisphaericaexon
TCONS_00027447-exon-sc0000627-1510915933:130349..130433TCONS_00027447-exon-sc0000627-1510915933:130349..130433Clytia hemisphaericaexon
TCONS_00027447-exon-sc0000627-1510915933:130072..130155TCONS_00027447-exon-sc0000627-1510915933:130072..130155Clytia hemisphaericaexon
TCONS_00027447-exon-sc0000627-1510915933:129767..129823TCONS_00027447-exon-sc0000627-1510915933:129767..129823Clytia hemisphaericaexon
TCONS_00027447-exon-sc0000627-1510915933:129448..129477TCONS_00027447-exon-sc0000627-1510915933:129448..129477Clytia hemisphaericaexon
TCONS_00027447-exon-sc0000627-1491911889:130349..130433TCONS_00027447-exon-sc0000627-1491911889:130349..130433Clytia hemisphaericaexon
TCONS_00027447-exon-sc0000627-1491911889:130072..130155TCONS_00027447-exon-sc0000627-1491911889:130072..130155Clytia hemisphaericaexon
TCONS_00027447-exon-sc0000627-1491911889:129767..129823TCONS_00027447-exon-sc0000627-1491911889:129767..129823Clytia hemisphaericaexon
TCONS_00027447-exon-sc0000627-1491911889:129448..129477TCONS_00027447-exon-sc0000627-1491911889:129448..129477Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000627supercontigsc0000627:129448..130433 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	9.4121	11.1564	4.48656	5.04031	5.29326	7.28507	0.707106	3.25377	0.928355	0	0	0	0	0	0	0	0	0	0	0	0	0.668774	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027447 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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