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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027458 ID=TCONS_00027458|Name=TCONS_00027458|organism=Clytia hemisphaerica|type=transcript|length=1040bp
caataacgactttctttttattacggaaAGCAAACGAGTGAAATATGTTg
tttcgttctttgatagttagggttagggttaaatTAGTGTTAAATTGTCT
GGAAAAGTTAGATAGTTAGGGTTTAGGGTTTGAAATAtatcgttctttga
tagttaagGTTAAGGTTTTTCGTTCTTCTTGTCGCCTTTTAATTGTtatt
tgtcattctttttaGATTGTCTGGATAGTATTTATACCGTAACTACTAAC
ATGGTAGATTTATGgatttttacatatctacacatatggtagatttacgg
attctaatatctacacatatggtagatttacggattctacatatctacac
atatggtagatttaCGGATTCTAatatctacacatatggtagaaataagt
gcgAGATTTGCCTGCATGAGAGGTAATGACATTGTGAAAGAGATTTTCCG
CAAAGAATTTAGAATATATCCGGCAACATTTGATCTTGATGTAGACATCG
TCAATAGGCCTTTGGAACGCCAAAACGCAAATCTAAGAGAACGTATTGCG
ATTCATAAAAGAGTTGCTGTTGCGCTTTGGCGGCTTGCAACAGGAAATCA
ATATCGTGTGGTGGCAAAAGTATTTGGTGTTGGCATAACGAGTGTATATC
ATATATTGATCGAATCTTGTGTTGTGTTGACTTTATTGGTTCCCCATTTC
ATAAAGTTTCCCTTCAGCACGGATGAATGTGCTGAAACTGTTACGAAATT
TAGACACCACACAGATTGTAAACTACCACAAATCGTTGGGTGCATTGACT
GCACTCATACTAGAATTACCAAATCTATCGGGGAGGGCAGTGTCGACTAT
GTCAACCTAAAGCATGTTTACTCTGGTAATACACAGGCTGTTGTTTGTGA
AGGTACAAATTTATCGATGTTTGCACTGGCTTCCCAGGATGTATGCATGA
TGCACGACGAGTTCTACGCATAATACTTCGCTTTATCGGAGAGCACAAAA
CAGTGAAATATAGGTATCAAGGTCTCAAGGTCTCAAGAGG Run BLAST on NCBI protein sequence of TCONS_00027458-protein >TCONS_00027458-protein ID=TCONS_00027458-protein|Name=TCONS_00027458-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
MVDLRILISTHMVEISARFACMRGNDIVKEIFRKEFRIYPATFDLDVDIV
NRPLERQNANLRERIAIHKRVAVALWRLATGNQYRVVAKVFGVGITSVYH
ILIESCVVLTLLVPHFIKFPFSTDECAETVTKFRHHTDCKLPQIVGCIDC
THTRITKSIGEGSVDYVNLKHVYSGNTQAVVCEGTNLSMFALASQDVCMM
HDEFYA Run BLAST on NCBI transcript from alignment at sc0000627:102893..103932 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027458 ID=TCONS_00027458|Name=TCONS_00027458|organism=Clytia hemisphaerica|type=transcript|length=1040bp|location=Sequence derived from alignment at sc0000627:102893..103932 (Clytia hemisphaerica)
CCTCTTGAGACCTTGAGACCTTGATACCTATATTTCACTGTTTTGTGCTC
TCCGATAAAGCGAAGTATTATGCGTAGAACTCGTCGTGCATCATGCATAC
ATCCTGGGAAGCCAGTGCAAACATCGATAAATTTGTACCTTCACAAACAA
CAGCCTGTGTATTACCAGAGTAAACATGCTTTAGGTTGACATAGTCGACA
CTGCCCTCCCCGATAGATTTGGTAATTCTAGTATGAGTGCAGTCAATGCA
CCCAACGATTTGTGGTAGTTTACAATCTGTGTGGTGTCTAAATTTCGTAA
CAGTTTCAGCACATTCATCCGTGCTGAAGGGAAACTTTATGAAATGGGGA
ACCAATAAAGTCAACACAACACAAGATTCGATCAATATATGATATACACT
CGTTATGCCAACACCAAATACTTTTGCCACCACACGATATTGATTTCCTG
TTGCAAGCCGCCAAAGCGCAACAGCAACTCTTTTATGAATCGCAATACGT
TCTCTTAGATTTGCGTTTTGGCGTTCCAAAGGCCTATTGACGATGTCTAC
ATCAAGATCAAATGTTGCCGGATATATTCTAAATTCTTTGCGGAAAATCT
CTTTCACAATGTCATTACCTCTCATGCAGGCAAATCTcgcacttatttct
accatatgtgtagatatTAGAATCCGtaaatctaccatatgtgtagatat
gtagaatccgtaaatctaccatatgtgtagatattagaatccgtaaatct
accatatgtgtagatatgtaaaaatcCATAAATCTACCATGTTAGTAGTT
ACGGTATAAATACTATCCAGACAATCtaaaaagaatgacaaataACAATT
AAAAGGCGACAAGAAGAACGAAAAACCTTAACcttaactatcaaagaacg
ataTATTTCAAACCCTAAACCCTAACTATCTAACTTTTCCAGACAATTTA
ACACTAatttaaccctaaccctaactatcaaagaacgaaacAACATATTT
CACTCGTTTGCTttccgtaataaaaagaaagtcgttattg Coding sequence (CDS) from alignment at sc0000627:102893..103932 >TCONS_00027458 ID=TCONS_00027458|Name=TCONS_00027458|organism=Clytia hemisphaerica|type=CDS|length=621bp|location=Sequence derived from alignment at sc0000627:102893..103932 (Clytia hemisphaerica)
TTATGCGTAGAACTCGTCGTGCATCATGCATACATCCTGGGAAGCCAGTG
CAAACATCGATAAATTTGTACCTTCACAAACAACAGCCTGTGTATTACCA
GAGTAAACATGCTTTAGGTTGACATAGTCGACACTGCCCTCCCCGATAGA
TTTGGTAATTCTAGTATGAGTGCAGTCAATGCACCCAACGATTTGTGGTA
GTTTACAATCTGTGTGGTGTCTAAATTTCGTAACAGTTTCAGCACATTCA
TCCGTGCTGAAGGGAAACTTTATGAAATGGGGAACCAATAAAGTCAACAC
AACACAAGATTCGATCAATATATGATATACACTCGTTATGCCAACACCAA
ATACTTTTGCCACCACACGATATTGATTTCCTGTTGCAAGCCGCCAAAGC
GCAACAGCAACTCTTTTATGAATCGCAATACGTTCTCTTAGATTTGCGTT
TTGGCGTTCCAAAGGCCTATTGACGATGTCTACATCAAGATCAAATGTTG
CCGGATATATTCTAAATTCTTTGCGGAAAATCTCTTTCACAATGTCATTA
CCTCTCATGCAGGCAAATCTcgcacttatttctaccatatgtgtagatat
TAGAATCCGtaaatctaccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027458-exon-sc0000627-1491911889:102893..103932 | TCONS_00027458-exon-sc0000627-1491911889:102893..103932 | Clytia hemisphaerica | exon |
| TCONS_00027458-exon-sc0000627-1510915933:102893..103932 | TCONS_00027458-exon-sc0000627-1510915933:102893..103932 | Clytia hemisphaerica | exon |
| TCONS_00027458-exon-sc0000627-1575043694:102893..103932 | TCONS_00027458-exon-sc0000627-1575043694:102893..103932 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000627 | supercontig | sc0000627:102893..103932 . |
Blast
The following BLAST results are available for this feature:
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