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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027490 ID=TCONS_00027490|Name=TCONS_00027490|organism=Clytia hemisphaerica|type=transcript|length=5420bpRun BLAST on NCBI protein sequence of TCONS_00027490-protein >TCONS_00027490-protein ID=TCONS_00027490-protein|Name=TCONS_00027490-protein|organism=Clytia hemisphaerica|type=polypeptide|length=779bp MDFESEEEMDDLDDATTDSPAPSNPGTPTIDLTGSPSTQSQSPSSLSITKRun BLAST on NCBI transcript from alignment at sc0000630:170223..183636- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027490 ID=TCONS_00027490|Name=TCONS_00027490|organism=Clytia hemisphaerica|type=transcript|length=13414bp|location=Sequence derived from alignment at sc0000630:170223..183636- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000630:170223..183636- >TCONS_00027490 ID=TCONS_00027490|Name=TCONS_00027490|organism=Clytia hemisphaerica|type=CDS|length=21060bp|location=Sequence derived from alignment at sc0000630:170223..183636- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027490 vs. Swiss-Prot (Human)
Match: BAZ1A (Bromodomain adjacent to zinc finger domain protein 1A OS=Homo sapiens GN=BAZ1A PE=1 SV=2) HSP 1 Score: 162.54 bits (410), Expect = 8.436e-40 Identity = 99/286 (34.62%), Postives = 165/286 (57.69%), Query Frame = 3
Query: 1194 DFTKEFGKVKEDLRLEDLKPLPTLVPMKSSLDQKLIGDSIMVLEFITIFGELFDVEQELESEITIEWIEEALTEHDAEGKYYQLLRFLLHAFLKFEQDENIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLKKPSTNARAAAAWSMLSQGLALHEMTIEPFSLSEILRLHIMSSGVKFGGVKNYNEWQRRGAYRYSDDPCVYFRHSEISIMKKLAVSSVYDLDAEEKLKLLVLICNQMLMLNVIRDYMDDANDKLKSLRKELREAQHVENQRRKEISREKWKK 2051
++ K++ K +ED+ +DLK LP P+K+ L ++ GD++MVLEF+ FGELFD++ E +T+E +EEAL +D+EG +LL F L A + +E K+ + + E E+ ++ S A AAAW L QG +L + ++ +LSEILRLHI++SG +Q+RG + +DD C+ R S S++KKL+ +SVYDL EK+K+L +C ++L L RD+++D D L+ ++E RE + ++++ +E + + +K
Sbjct: 390 EYLKQWSKPREDMECDDLKELPEPTPVKTRLPPEIFGDALMVLEFLNAFGELFDLQDEFPDGVTLEVLEEALVGNDSEGPLCELLFFFLTAIFQAIAEEEEEVAKEQLTDADTKDLTEALDEDADPTKSAL------SAVASLAAAWPQLHQGCSLKSLDLDSCTLSEILRLHILASGADVTSANAKYRYQKRGGFDATDDACMELRLSNPSLVKKLSSTSVYDLTPGEKMKILHALCGKLLTLVSTRDFIEDYVDILRQAKQEFRELKAEQHRKEREEAAARIRK 669 HSP 2 Score: 160.614 bits (405), Expect = 3.620e-39 Identity = 94/264 (35.61%), Postives = 148/264 (56.06%), Query Frame = 3
Query: 72 MPLLRKKPFIPKEAPPDLDGEDEVFYCEMTGEIFQDYEVFYQRMILCNSLVWSCECTGKSSLTFKEAKEYEENVKKSLAAFPEPLKRSVLNLVHHTKRGKISALVDEIYDYLKNRYQLNEEVELKIKDKWASGK---IVALPDKSNLNLLKTPQKTIDS---LKSPAKDKENDSNAANKISKSPLGQKNQWPDASNTEYKVSLTKGKEGEIVTVKGKSIRRAKGVFLKDKVRLYMRQTCSRTTVSSDDGYWVVLSSAISTFNLG 845
MPLL +KPF+ ++ P DL ++EVFYC++T EIF+ Y+ F++R ILCNSLVWSC TG+ LT++EA E E+ +++L +FPEPL VL L T R ++ + D+I+ Y+K+RY + E VE+ I++ A + + LP ++D + S + D E S + G+K D +YKV TK + E VK I R K +F +DK++L+++Q C DG + +S++ST+ +
Sbjct: 1 MPLLHRKPFVRQKPPADLRPDEEVFYCKVTNEIFRHYDDFFERTILCNSLVWSCAVTGRPGLTYQEALESEKKARQNLQSFPEPLIIPVLYLTSLTHRSRLHEICDDIFAYVKDRYFVEETVEV-IRNNGARLQCRILEVLPPSHQNGFANGHVNSVDGETIIISDSDDSETQSCSFQN------GKKKDAIDPLLFKYKVQPTKKELHESAIVKATQISRRKHLFSRDKLKLFLKQHC-----EPQDGVIKIKASSLSTYKIA 252 HSP 3 Score: 152.525 bits (384), Expect = 9.269e-37 Identity = 101/295 (34.24%), Postives = 138/295 (46.78%), Query Frame = 1
Query: 3127 SQAIDKSLFQCMEDFIEGSLRDAILELEDRIWVAGFGGIHTDERTTWRESIEEGMSKLIQLGSPVKKPASDKTEEPVKAEQPMEVDQPMEVNGHPGVNGHSEGDASTTTIQEPYKAIP----LHLKGEEGNEERSRCSTPVEEEPDNERIEFVRDMAKQLLMVAKCIERKYLXXXXXXXXXXXXXXXXXSIEGGQKANDSKEEEKKPSTCISRWEESLSKCSSFSQVFVHLSTLDRSIMWDKSIQNVKCRLCRRKGNEDEMLLCDGCDRGFHMSCLKPPLKNVPKGDWFCKDCRP 3999
S A D S C E +E LRD +L++EDRI+ G I +R WR ++E G +L+ E N G+ D I E K I L +K E + + STP V +A L + + IER++L + A+DS K T + RW ESL +S SQVF+HLSTLDRS++W KSI N +C++CR+KG+ + M+LCDGCDRG H C++P LK VP+GDWFC +CRP
Sbjct: 961 SNAYDPSQM-CAEKQLELRLRDFLLDIEDRIYQGTLGAIKVTDRHIWRSALESGRYELLS-----------------------------EENKENGIIKTVNEDVEEMEIDEQTKVIVKDRLLGIKTETPSTVSTNASTP------QSVSSVVHYLAMALFQIEQGIERRFL-------------------KAPLDASDSGRSYK---TVLDRWRESLLSSASLSQVFLHLSTLDRSVIWSKSILNARCKICRKKGDAENMVLCDGCDRGHHTYCVRPKLKTVPEGDWFCPECRP 1197 The following BLAST results are available for this feature:
BLAST of TCONS_00027490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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