TCONS_00027523 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027523
Unique NameTCONS_00027523
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length761

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027523 ID=TCONS_00027523|Name=TCONS_00027523|organism=Clytia hemisphaerica|type=transcript|length=761bp
AAGGAGGGTCATTATATCGATAGACTAACAAAGACCCACAAAAGTTTGAC
CAATGATAGGCACTTACCCTTGACCGAGGGAAGGATCAAAGAGATGAAAG
TGGTGGAGTTGAGGGAAGAGCTGCGAAGAAGGAACCTACCGATGACTGGG
CTTAAGTTGGTCATCATCGAAAGGTTGCTGAACTACTGGAGAGAAAACAA
AATTAACGAGGAAGAAAAGAGAAGAAATGAAAGCTGAAATAAGGTTTGTT
CTGAAAGTAGTAAgtagaaatttgttttttaaaagggGAGATTTGAGAAG
AAGGTAAATTCTACATTTGATGCAAAGAAGTTACTTCAATTGAACATGAT
TCATGCTTCAAACGCTTTCTAAAGCAATTTTATAAACCAATCTACAGTGG
AGGCAGGTGGTCGGTATCTTTTGATATGGATTGAATTAGACTAGTCCGAC
AAAGGGATGAGGAGAGGAGATTTTCGGACCAGTTGCAAGAAGTGACAAAA
AGAGATGAAGAGGAGAAAAGTAAGAAAAccataaatatttattttttaga
tgTGTTTTACTCGAAAGATGAAGAGGAgcaaagttattttataaactAAT
CTACAGTGGAGGCAGGTGGTCGGTATCTTTTGATATGGATTGAATTAGAC
TAGTTCGACAAAGGGACGAGGAGAGGAGATTTTCGGACCAACTGCAAGAA
GAAACAGCGAACATCAGGAGAGAGAAGAAGGAAACAACCGATGAGTGGGT
TGAAGGTGGTT
Run BLAST on NCBI

transcript from alignment at sc0000631:187926..188686-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027523 ID=TCONS_00027523|Name=TCONS_00027523|organism=Clytia hemisphaerica|type=transcript|length=761bp|location=Sequence derived from alignment at sc0000631:187926..188686- (Clytia hemisphaerica)
AAGGAGGGTCATTATATCGATAGACTAACAAAGACCCACAAAAGTTTGAC
CAATGATAGGCACTTACCCTTGACCGAGGGAAGGATCAAAGAGATGAAAG
TGGTGGAGTTGAGGGAAGAGCTGCGAAGAAGGAACCTACCGATGACTGGG
CTTAAGTTGGTCATCATCGAAAGGTTGCTGAACTACTGGAGAGAAAACAA
AATTAACGAGGAAGAAAAGAGAAGAAATGAAAGCTGAAATAAGGTTTGTT
CTGAAAGTAGTAAGTAGAAATTTGTTTTTTAAAAGGGGAGATTTGAGAAG
AAGGTAAATTCTACATTTGATGCAAAGAAGTTACTTCAATTGAACATGAT
TCATGCTTCAAACGCTTTCTAAAGCAATTTTATAAACCAATCTACAGTGG
AGGCAGGTGGTCGGTATCTTTTGATATGGATTGAATTAGACTAGTCCGAC
AAAGGGATGAGGAGAGGAGATTTTCGGACCAGTTGCAAGAAGTGACAAAA
AGAGATGAAGAGGAGAAAAGTAAGAAAACCATAAATATTTATTTTTTAGA
TGTGTTTTACTCGAAAGATGAAGAGGAGCAAAGTTATTTTATAAACTAAT
CTACAGTGGAGGCAGGTGGTCGGTATCTTTTGATATGGATTGAATTAGAC
TAGTTCGACAAAGGGACGAGGAGAGGAGATTTTCGGACCAACTGCAAGAA
GAAACAGCGAACATCAGGAGAGAGAAGAAGGAAACAACCGATGAGTGGGT
TGAAGGTGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015512XLOC_015512Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027523-exon-sc0000631-1575043694:187926..188686TCONS_00027523-exon-sc0000631-1575043694:187926..188686Clytia hemisphaericaexon
TCONS_00027523-exon-sc0000631-1510915933:187926..188686TCONS_00027523-exon-sc0000631-1510915933:187926..188686Clytia hemisphaericaexon
TCONS_00027523-exon-sc0000631-1491911889:187926..188686TCONS_00027523-exon-sc0000631-1491911889:187926..188686Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000631supercontigsc0000631:187926..188686 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.34439	0.525617	0.24126	0	0.306121	0.30409	0.170402	0.248499	0.701601	0.959598	0.111202	0.241224	0.517805	0.0998095	1.05527	1.56478	0.783515	0.382087	0.294202	0.237025	0.331549	0.257404	0.394529	0.183737	0.207197	0.100919	0.409813	0	0.919799	0.963831
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027523 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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