TCONS_00027627 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027627
Unique NameTCONS_00027627
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027627 ID=TCONS_00027627|Name=TCONS_00027627|organism=Clytia hemisphaerica|type=transcript|length=385bp
TACTTCACAATCGAACATTCAATTAGTAACCGTCTGGAcaatcagttagt
cacactgtAGAAAGGTGATTGAAGGAAACGAATTAGTTTCAATGATGGCT
AAGGCCACATCTAAATATATTGTTTGTAATACATTAGatctaaatgaaaa
gaaagaagaatataAACTAATCTCAACATCTCCCCTTCCCGGAGAGGTCA
TGGTCACTGTAGATAGTGTTcggtttctttttatatatacagTTCAACGT
TTCTTTATATACAGTTCAATGGTTCTTTCCCCCTATCGGCGGGGAGCAAG
TGGTTGTTGTTCCAATAGGCCAGGCGCGTTATGAGATGCTAATCGTCGTA
GGATATTTGATGACGATCTGGTAACCATTGCTTGT
Run BLAST on NCBI

transcript from alignment at sc0000636:74989..75373

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027627 ID=TCONS_00027627|Name=TCONS_00027627|organism=Clytia hemisphaerica|type=transcript|length=385bp|location=Sequence derived from alignment at sc0000636:74989..75373 (Clytia hemisphaerica)
ACAAGCAATGGTTACCAGATCGTCATCAAATATCCTACGACGATTAGCAT
CTCATAACGCGCCTGGCCTATTGGAACAACAACCACTTGCTCCCCGCCGA
TAGGGGGAAAGAACCATTGAACTGTATATAAAGAAACGTTGAActgtata
tataaaaagaaaccgAACACTATCTACAGTGACCATGACCTCTCCGGGAA
GGGGAGATGTTGAGATTAGTTtatattcttctttcttttcatttagatCT
AATGTATTACAAACAATATATTTAGATGTGGCCTTAGCCATCATTGAAAC
TAATTCGTTTCCTTCAATCACCTTTCTacagtgtgactaactgattgTCC
AGACGGTTACTAATTGAATGTTCGATTGTGAAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015583XLOC_015583Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027627-exon-sc0000636-1491911889:74989..75373TCONS_00027627-exon-sc0000636-1491911889:74989..75373Clytia hemisphaericaexon
TCONS_00027627-exon-sc0000636-1510915933:74989..75373TCONS_00027627-exon-sc0000636-1510915933:74989..75373Clytia hemisphaericaexon
TCONS_00027627-exon-sc0000636-1575043694:74989..75373TCONS_00027627-exon-sc0000636-1575043694:74989..75373Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000636supercontigsc0000636:74989..75373 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.841087	0.948681	0.689549	3.00452	1.78249	0.668299	0.822148	0.80074	0.562353	0.541376	1.75881	1.56032	0.166916	0	0.141478	0.253119	0.265177	0.155102	0	0	0.683135	0.428212	0.769083	0.328205	0	0.193155	0.542531	0	0.447472	0.455903
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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