TCONS_00027652 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027652
Unique NameTCONS_00027652
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027652 ID=TCONS_00027652|Name=TCONS_00027652|organism=Clytia hemisphaerica|type=transcript|length=453bp
GAAGTAATGGCTTCTCGATCTGGAAATTATAGAACATCGAAAAATCAGAT
CCTCAAGAGACTTAGCAAAATACGTGCTGCATTGGACCAATGTTTCAAAA
ACAATGAACCACAATGTAAGAAGAAAACGATTCCTCAATTCCTCTCAAGA
CGTATTATTATCCAcgaaaacaaagatggcggattttACGTTCATTCCAT
CGAAAATATGGACCAGCAAAATACCCCTTATAATGTGAAACTCCATATCA
GAGATGAGAAGAAAGTCTCGAGAAATGTCAACAACGATATACCACAAAGT
CCTGAATTGATTGAACAACATCCGAAAGAAATGTTCATGGTTTTCAAACA
CTCGACTGGATTTAAGCAAGACAAAGACAGCCAGGATATTCGGCAGACTA
CCACTTTGGGTCTTTTTGATCGGCTTTTGCTCTCAATGGTAAAATCAAAC
GTG
Run BLAST on NCBI

protein sequence of TCONS_00027652-protein

>TCONS_00027652-protein ID=TCONS_00027652-protein|Name=TCONS_00027652-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
EVMASRSGNYRTSKNQILKRLSKIRAALDQCFKNNEPQCKKKTIPQFLSR
RIIIHENKDGGFYVHSIENMDQQNTPYNVKLHIRDEKKVSRNVNNDIPQS
PELIEQHPKEMFMVFKHSTGFKQDKDSQDIRQTTTLGLFDRLLLSMVKSN
V
Run BLAST on NCBI

transcript from alignment at sc0000638:113513..114457+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027652 ID=TCONS_00027652|Name=TCONS_00027652|organism=Clytia hemisphaerica|type=transcript|length=945bp|location=Sequence derived from alignment at sc0000638:113513..114457+ (Clytia hemisphaerica)
GAAGTAATGGCTTCTCGATCTGGAAATTATAGAACATCGAAAAATCAGGT
TAGTACTATATTTTACTTTTGAGTGAGGAAAATTCCTATAACAATCTAAA
ATCCATCAGAACGGGATAACTCCAATTGGTTCTTATTGAAGAAATATTCG
AACTGTAGAGATAGTATTTTACGAGGGTATCCCCTGGGCATCCCCTTGCC
GGAACatgagaattagttcgaattatagaagaaTACGAATAATTAAAATT
CGAATTAGTGGCGAGTCCAttattgttcttaatttcgaTTTTGAATTCTT
AAGTTTCATTgtgtctctataactcgaacacgcacgggaacacaaatttg
ttcgagttaaggacatttcgagttatggagtaaggtttgtAATGCATTGT
TACCTGAAAGGGGCTATACAACTTGTTTGAGTTATTGAGGCATTCAAgct
atagaggttcgagttaaagagattcgagttatagaggttcgagttataga
ggttcgagttaaagagattcTACATTATCATGTTTTTCAGATCCTCAAGA
GACTTAGCAAAATACGTGCTGCATTGGACCAATGTTTCAAAAACAATGAA
CCACAATGTAAGAAGAAAACGATTCCTCAATTCCTCTCAAGACGTATTAT
TATCCAcgaaaacaaagatggcggattttACGTTCATTCCATCGAAAATA
TGGACCAGCAAAATACCCCTTATAATGTGAAACTCCATATCAGAGATGAG
AAGAAAGTCTCGAGAAATGTCAACAACGATATACCACAAAGTCCTGAATT
GATTGAACAACATCCGAAAGAAATGTTCATGGTTTTCAAACACTCGACTG
GATTTAAGCAAGACAAAGACAGCCAGGATATTCGGCAGACTACCACTTTG
GGTCTTTTTGATCGGCTTTTGCTCTCAATGGTAAAATCAAACGTG

Coding sequence (CDS) from alignment at sc0000638:113513..114457+

>TCONS_00027652 ID=TCONS_00027652|Name=TCONS_00027652|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at sc0000638:113513..114457+ (Clytia hemisphaerica)
GAAGTAATGGCTTCTCGATCTGGAAATTATAGAACATCGAAAAATCAGAT
CCTCAAGAGACTTAGCAAAATACGTGCTGCATTGGACCAATGTTTCAAAA
ACAATGAACCACAATGTAAGAAGAAAACGATTCCTCAATTCCTCTCAAGA
CGTATTATTATCCAcgaaaacaaagatggcggattttACGTTCATTCCAT
CGAAAATATGGACCAGCAAAATACCCCTTATAATGTGAAACTCCATATCA
GAGATGAGAAGAAAGTCTCGAGAAATGTCAACAACGATATACCACAAAGT
CCTGAATTGATTGAACAACATCCGAAAGAAATGTTCATGGTTTTCAAACA
CTCGACTGGATTTAAGCAAGACAAAGACAGCCAGGATATTCGGCAGACTA
CCACTTTGGGTCTTTTTGATCGGCTTTTGCTCTCAATGGTAAAATCAAAC
GTGGAAGTAATGGCTTCTCGATCTGGAAATTATAGAACATCGAAAAATCA
GATCCTCAAGAGACTTAGCAAAATACGTGCTGCATTGGACCAATGTTTCA
AAAACAATGAACCACAATGTAAGAAGAAAACGATTCCTCAATTCCTCTCA
AGACGTATTATTATCCAcgaaaacaaagatggcggattttACGTTCATTC
CATCGAAAATATGGACCAGCAAAATACCCCTTATAATGTGAAACTCCATA
TCAGAGATGAGAAGAAAGTCTCGAGAAATGTCAACAACGATATACCACAA
AGTCCTGAATTGATTGAACAACATCCGAAAGAAATGTTCATGGTTTTCAA
ACACTCGACTGGATTTAAGCAAGACAAAGACAGCCAGGATATTCGGCAGA
CTACCACTTTGGGTCTTTTTGATCGGCTTTTGCTCTCAATGGTAAAATCA
AACGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015600XLOC_015600Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027652-proteinTCONS_00027652-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027652-exon-sc0000638-1491911889:113513..113560TCONS_00027652-exon-sc0000638-1491911889:113513..113560Clytia hemisphaericaexon
TCONS_00027652-exon-sc0000638-1510915933:113513..113560TCONS_00027652-exon-sc0000638-1510915933:113513..113560Clytia hemisphaericaexon
TCONS_00027652-exon-sc0000638-1575043694:113513..113560TCONS_00027652-exon-sc0000638-1575043694:113513..113560Clytia hemisphaericaexon
TCONS_00027652-exon-sc0000638-1491911889:114053..114457TCONS_00027652-exon-sc0000638-1491911889:114053..114457Clytia hemisphaericaexon
TCONS_00027652-exon-sc0000638-1510915933:114053..114457TCONS_00027652-exon-sc0000638-1510915933:114053..114457Clytia hemisphaericaexon
TCONS_00027652-exon-sc0000638-1575043694:114053..114457TCONS_00027652-exon-sc0000638-1575043694:114053..114457Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000638supercontigsc0000638:113513..114457 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.74481	1.41788	0.49389	0.483194	0.588242	1.08462	1.86935	0.875033	0.367579	0.455306	1.32579	0.290508	0.193403	0.502127	1.65127	1.77206	2.83794	1.90191	0.618256	1.29392	1.40582	1.02856	1.33371	1.51567	0.468331	0.417974	0.996865	0	0	0.986544
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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